Plexin structures are coming: opportunities for multilevel investigations of semaphorin guidance receptors, their cell signaling mechanisms, and functions
Open accessAbstract
Plexin transmembrane receptors and their semaphorin ligands, as well as their co-receptors (Neuropilin, Integrin, VEGFR2, ErbB2, and Met kinase) are emerging as key regulatory proteins in a wide variety of developmental, regenerative, but also pathological processes. The diverse arenas of plexin function are surveyed, including roles in the nervous, cardiovascular, bone and skeletal, and immune systems. Such different settings require considerable specificity among the plexin and semaphorin family members which in turn are accompanied by a variety of cell signaling networks. Underlying the latter are the mechanistic details of the interactions and catalytic events at the molecular level. Very recently, dramatic progress has been made in solving the structures of plexins and of their complexes with associated proteins. This molecular level information is now suggesting detailed mechanisms for the function of both the extracellular as well as the intracellular plexin regions. Specifically, several groups have solved structures for extracellular domains for plexin-A2, -B1, and -C1, many in complex with semaphorin ligands. On the intracellular side, the role of small Rho GTPases has been of particular interest. These directly associate with plexin and stimulate a GTPase activating (GAP) function in the plexin catalytic domain to downregulate Ras GTPases. Structures for the Rho GTPase binding domains have been presented for several plexins, some with Rnd1 bound. The entire intracellular domain structure of plexin-A1, -A3, and -B1 have also been solved alone and in complex with Rac1. However, key aspects of the interplay between GTPases and plexins remain far from clear. The structural information is helping the plexin field to focus on key questions at the protein structural, cellular, as well as organism level that collaboratoria of investigations are likely to answer.
The claims and statistics of this paper haven’t been checked yet.
Run the check — free, no account needed. It reads the open-access text and checks the sources it cites.
Integrity signals
Registry
Cites
Statistics
Claims the paper makes
The claims and statistics of this paper haven’t been checked yet.
Run the check — free, no account needed. It reads the open-access text and checks the sources it cites.
Claims other papers make about this one
Each is checked against this paper’s own text: does it say what the citing paper says it does?
Plexins and their cognate semaphorin ligands mediate a variety of cell-cell communications in development, adult physiology, and cancer.
“In addition to axon pathfinding during neurodevelopment, plexins and their cognate semaphorin ligands also mediate a variety of cell-cell communications in development, adult physiology, and cancer15–18.”
From Regulation of cell distancing in peri-plaque glial nets by Plexin-B1 affects glial activation and amyloid compaction in Alzheimer’s disease (2024) · cites this paper as [18]
Self-check
Percentages, sums and reported differences re-computed from the paper’s own numbers.
The self-check needs the paper’s full text.
No citation lists for this paper
No citation lists for this paper yet — checked again daily.
References 510 · Cited by 170
Research works printed but not linked: 20
- [57]57. Li X, Law JW, Lee AY. (2011) Semaphorin 5A and plexin-B3 regulate human glioma cell motility and morphology through Rac1 and the actin cytoskeleton. Oncogene. Jun 27. doi: 10.1038/onc.2011.256 · DOI
- [63]63. Bellon A, Luchino J, Haigh K, Rougon G, Haigh J, Chauvet S, Mann F (2010) VEGFR2 (KDR/Flk1) signaling mediates axon growth in response to semaphorin 3E in the developing brain. Neuron 66(2):205-219
- [64]64. Ding JB, Oh WJ, Sabatini BL, Gu C (2011) Semaphorin 3EPlexin-D1 signaling controls pathway-specific synapse formation in the striatum. Nat Neurosci. Dec 18. doi: 10.1038/nn.3003 . [Epub ahead of print] · DOI
- [122]122. Toyofuku T, Kikutani H (2007) Semaphorins: receptor and intracellular signaling mechanisms, Chapter 9, Semaphorin signaling during cardiac development. Adv Exp Med Biol 600:109-117
- [143]143. Neufeld G, Sabag AD, Rabinovicz N, Kessler O (2012) Semaphorins in angiogenesis and tumor progression. Cold Spring Harb Perspect Med. 2(1):a006718
- [166]166. Worzfeld T, Swiercz JM, Looso M, Straub BK, Sivaraj KK, Offermanns S (2012) ErbB-2 signals through Plexin-B1 to promote breast cancer metastasis. J Clin Invest. 122(4):1296-1305
- [194]194. Casazza A, Kigel B, Maione F, Capparuccia L, Kessler O, Giraudo E, Mazzone M, Neufeld G, Tamagnone L (2012) Tumour growth inhibition and anti-metastatic activity of a mutated furin-resistant Semaphorin 3E isoform. EMBO Mol Med 4(3):234-250
- [206]206. Jubb AM, Strickland LA, Liu SD, Mak J, Schmidt M, Koeppen H (2011) Neuropilin-1 expression in cancer and development. J Pathol 226(1):50-60
- [219]219. Soong J, Chen Y, Shustef EM, Scott GA (2012) Sema4D, the Ligand for Plexin B1, Suppresses cMet Activation and Migration and Promotes Melanocyte Survival and Growth. J Invest Dermatol. 132(4):1230-1238
- [231]231. Sun T, Krishnan R, Swiercz JM (2012) Grb2 mediates Semaphorin4D-dependent RhoA inactivation. J Cell Sci. (in press)
- [249]249. Hayashi M, Nakashima T, Taniguchi M, Kodama T, Kumanogoh A, Takayanagi H(2012) Osteoprotection by semaphorin 3A. Nature. Apr 18. doi: 10.1038/nature11000 · DOI · Paper page
- [266]266. Takamatsu H, Kumanogoh A (2012) Diverse roles for semaphorin-plexin signaling in the immunesystem. Trends Immunol 33(3):127-135
- [277]277. Choi YI, Duke-Cohan JS, Ahmed WB, Handley MA, Mann F, Epstein JA,Clayton LK, Reinherz EL (2008) PlexinD1 glycoprotein controls migration of positively selectedthymocytes into the medulla. Immunity 29(6):888-898
- [319]319. Negishi M, Buck M (2012) ''Ras/Rap GAP function and GTPase sequestration in plexin-mediated cell signaling mechanisms'' Commentary/E-letter in Science Signaling http://stke.sciencemag. org/cgi/eletters/5/207/ra6
- [404]404. Bork P, Doerks T, Springer TA, Snel B (1999) Domains in plexins: links to integrins and transcription factors. Trends Biochem Sci 24:261-263
- [413]413. Luo BH, Springer TA (2006) Integrin structures and conformational signaling. Curr Opin Cell Biol 18:579-586
- [419]419. Xiao T, Takagi J, Coller BS, Wang JH, Springer TA (2004) Structural basis for allostery in integrins and binding to fibrinogen-mimetic therapeutics. Nature 432:59-67
- [436]436. Zhang L, Bouguet-Bonnet S, Buck M (2011) ''Combining NMR and Molecular Dynamics Studies for Insights into the Allostery of Small GTPase-Protein Interactions''-book chapter for Methods in Molecular Biology: Allostery.Methods Proto (Humana Press) 796:235-56
- [451]451. Casaletto JB, McClatchey AI (2012) Spatial regulation of receptor tyrosine kinasesin development and cancer. Nat Rev Cancer 12(6):387-400
- [471]471. Lipshtat A, Jayaraman G, He JC, Iyengar R (2010) Design of versatile biochemical switches that respond to amplitude, duration, and spatial cues. Proc. Natl. Acad. Sci. U. S. A. 107:1247-1252
- Authors
- Hota, P. K., & Buck, M.
- Affiliations
- Case Western Reserve University (US)
- Case Comprehensive Cancer Center (US)
- Corresponding author
- Buck, Matthias
- Venue
- Cellular and Molecular Life Sciences
- Published
- 2012-06-29
- Volume
- 69
- Issue
- 22
- Pages
- 3765-3805
- ISSN
- 1420-682X (ISSN-L)
- 1420-9071
- PMC
- PMC11115013
- OpenAlex
- W2055174533
- Cited by
- 170
- References
- 510
- Citations by year
- 2026: 7 · 2025: 7 · 2024: 10 · 2023: 10 · 2022: 14 · 2021: 19 · 2020: 11 · 2019: 11 · 2018: 9 · 2017: 8 · 2016: 19 · 2015: 14 · 2014: 13 · 2013: 16 · 2012: 2
- FWCI
- 1.52
- Type
- journal article
- Language
- en
- Open access
- green
- www.ncbi.nlm.nih.gov
- Licence
- www.springer.com/tdm (tdm)
- Locations
- Cellular and Molecular Life Sciences (publishedVersion)
- PubMed Central (publishedVersion)
- PubMed (publishedVersion)
- Funders
- National Institute of General Medical Sciences (GM073071, R01GM073071)
- Topics
- Life Sciences › Neuroscience › Cellular and Molecular Neuroscience › Axon Guidance and Neuronal Signaling
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › Protein Kinase Regulation and GTPase Signaling
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › Developmental Biology and Gene Regulation
- Keywords
- plexins, semaphorins, PLXNA2, Plexin-B1, Plexin C1, PLXNA1, Rho GTPases, RhoGAP, Rnd1, Rac1, Ras GTPase, co-receptors, neuropilins, integrins, VEGFR2, ERBB2, MET kinase, protein structure, signal transduction, axon guidance, brain development, cardiovascular development, skeletal development, immune system
- MeSH terms
- Cardiovascular Diseases, Cardiovascular System, Humans, Ligands, Neoplasm Metastasis, Neoplasms, Nerve Tissue Proteins, Nervous System, Nervous System Diseases, Signal Transduction, Cell Adhesion Molecules, Semaphorins
About these checks
Registry, retraction, Cites and statistics results are computed, not judged, with one exception: a printed reference that no index lists is read once by a model before it counts as a citation error. Claims are extracted by a model and kept only when their quote appears verbatim in the text; each cited source is then checked, with a model’s help, for whether it says what the claim relies on. Those verdicts can be wrong — read the claim’s quote and the cited source before relying on one.
Statistics and arithmetic are recomputed, not judged.
Confidence bands are shown only for fields calibrated on our annotated test set. None is calibrated yet, so no band is shown.
What counts as a claim ›How we measure confidence ›How we check this ›
Are you an author, or do you see a problem with this page? Request a review