Permanence via invasion graphs: incorporating community assembly into modern coexistence theory
Open accessAbstract
To understand the mechanisms underlying species coexistence, ecologists often study invasion growth rates of theoretical and data-driven models. These growth rates correspond to average per-capita growth rates of one species with respect to an ergodic measure supporting other species. In the ecological literature, coexistence often is equated with the invasion growth rates being positive. Intuitively, positive invasion growth rates ensure that species recover from being rare. To provide a mathematically rigorous framework for this approach, we prove theorems that answer two questions: (i) When do the signs of the invasion growth rates determine coexistence? (ii) When signs are sufficient, which invasion growth rates need to be positive? We focus on deterministic models and equate coexistence with permanence, i.e., a global attractor bounded away from extinction. For models satisfying certain technical assumptions, we introduce invasion graphs where vertices correspond to proper subsets of species (communities) supporting an ergodic measure and directed edges correspond to potential transitions between communities due to invasions by missing species. These directed edges are determined by the signs of invasion growth rates. When the invasion graph is acyclic (i.e. there is no sequence of invasions starting and ending at the same community), we show that permanence is determined by the signs of the invasion growth rates. In this case, permanence is characterized by the invasibility of all$$-i$$-icommunities, i.e., communities without species i where all other missing species have negative invasion growth rates. To illustrate the applicability of the results, we show that dissipative Lotka-Volterra models generically satisfy our technical assumptions and computing their invasion graphs reduces to solving systems of linear equations. We also apply our results to models of competing species with pulsed resources or sharing a predator that exhibits switching behavior. Open problems for both deterministic and stochastic models are discussed. Our results highlight the importance of using concepts about community assembly to study coexistence.
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References 72 · Cited by 35
Research works printed but not linked: 31
- Adler PB Ellner SP Levine JM Coexistence of perennial plants: an embarrassment of niches Ecol Lett 2010 13 1019 1029 20545729
- Benaïm M (2018) Stochastic persistence. arXiv preprint arXiv:1806.08450 · arXiv
- Benaïm M Schreiber SJ Persistence and extinction for stochastic ecological models with internal and external variables J Math Biol 2019 79 393 431 31053893
- Benaïm M Hofbauer J Sandholm W Robust permanence and impermanence for the stochastic replicator dynamics J Biol Dyn 2008 2 180 195 22880700
- Chesson P Chesson’s coexistence theory: comment Ecology 2020 101 e02851 31351008
- Chesson P Kuang JJ The interaction between predation and competition Nature 2008 456 7219 235 238 19005554
- Chesson PL Ellner S Invasibility and stochastic boundedness in monotonic competition models J Math Biol 1989 27 117 138 2769087
- Ellner SP Snyder RE Adler PB Hooker G An expanded modern coexistence theory for empirical applications Ecol Lett 2018 22 3 18 30311392
- Ellner SP Snyder RE Adler PB How to quantify the temporal storage effect using simulations instead of math Ecol Lett 2016 19 1333 1342 27678218
- Fowler AC Atto-foxes and other minutiae Bull Math Biol 2021 83 1 25 PMC8408093 34463830
- Grainger TN, Letten AD, Gilbert B, and Fukami, T (2019a) Applying modern coexistence theory to priority effects. In: proceedings of the national academy of sciences pp 6205–6210 PMC6442631 30850518
- Grainger TN Levine JM Gilbert B The invasion criterion: a common currency for ecological research Trends Ecol Evol 2019 34 925 935 31300168
- Hening A, Nguyen DH, and Schreiber SJ (2020) A classification of the dynamics of three-dimensional stochastic ecological systems. arXiv preprint arXiv:2004.00535 · arXiv
- Hofbauer F Hofbauer J Raith P Steinberger T Intermingled basins in a two species system J Math Biol 2004 49 293 309 15293015
- Hofbauer J Sigmund K Evolutionary games and population dynamics 1998 Cambridge Cambridge University Press
- Hofbauer J Kon R Saito Y Qualitative permanence of Lotka-Volterra equations J Math Biol 2008 57 6 863 881 18521608
- Hutson V Schmitt K Permanence and the dynamics of biological systems Math Biosci 1992 111 1 71 1515736
- Kon R Permanence of discrete-time Kolmogorov systems for two species and saturated fixed points J Math Biol 2004 48 57 81 14685772
- Kondoh M Foraging adaptation and the relationship between food-web complexity and stability Science 2003 299 1388 1391 12610303
- Krupa M Robust heteroclinic cycles J Nonlinear Sci 1997 7 129 176 PMC12159117 40519796
- Lenas P Pavlou S Coexistence of three competing microbial populations in a chemostat with periodically varying dilution rate Math Biosci 1995 129 111 142 7549217
- Mañé R Ergodic Theory and Differentiable Dynamics 1983 New York Springer-Verlag
- Patel S Schreiber SJ Robust permanence for ecological equations with internal and external feedbacks J Math Biol 2018 77 79 105 29075847 PMC5949143
- Roughgarden J Species packing and the competition function with illustrations from coral reef fish Theor Popul Biol 1974 5 163 186 4825533
- Schreiber, SJ (2022) R Code for the article “Permanence via invasion graphs: Incorporating community assembly into Modern Coexistence Theory” by Josef Hofbauer and Sebastian J. Schreiber in the Journal of Mathematical Biology PMC9579112 36255477
- Schreiber SJ Benaïm M Atchadé KAS Persistence in fluctuating environments J Math Biol 2011 62 655 683 20532555
- Serván CA Allesina S Tractable models of ecological assembly Ecol Lett 2021 24 1029 1037 33773006
- Sigmund K Schuster P Permanence and uninvadability for deterministic population models Stochastic phenomena and chaotic behaviour in complex systems 1984 Berlin Springer 173 184
- Smith HL Waltman P The Theory of the Chemostat: Dynamics of Microbial Competition 1995 Cambridge Cambridge University Press
- Turelli M Does environmental variability limit niche overlap? Proc Natl Acad Sci USA 1978 75 5085 5089 16592581 PMC336268
- Zhao X-Q Dynamical systems in population biology 2003 Springer-Verlag, New York CMS Books in Mathematics/Ouvrages de Mathématiques de la SMC
- Authors
- Hofbauer, J., & Schreiber, S. J.
- Affiliations
- University of Vienna (AT)
- University of California, Davis (US)
- Corresponding author
- Schreiber, Sebastian J.
- Venue
- Journal of Mathematical Biology
- Published
- 2022-10-18
- Volume
- 85
- Issue
- 5
- Pages
- 54-54
- ISSN
- 0303-6812 (ISSN-L)
- 1432-1416
- PMC
- PMC9579112
- OpenAlex
- W4306690916
- Cited by
- 35
- References
- 72
- Citations by year
- 2026: 11 · 2025: 9 · 2024: 7 · 2023: 7 · 2022: 1
- FWCI
- 5.30
- Type
- journal article
- Language
- en
- Open access
- hybrid
- doi.org
- Locations
- Journal of Mathematical Biology (publishedVersion, cc-by)
- PubMed Central (publishedVersion, cc-by)
- PubMed (publishedVersion)
- arXiv (Cornell University) (submittedVersion)
- eScholarship (California Digital Library) (submittedVersion, cc-by)
- arXiv (Cornell University) (cc-by)
- Funders
- Division of Mathematical Sciences (DMS1716803)
- Topics
- Health Sciences › Medicine › Public Health, Environmental and Occupational Health › Mathematical and Theoretical Epidemiology and Ecology Models
- Physical Sciences › Environmental Science › Global and Planetary Change › Ecosystem dynamics and resilience
- Physical Sciences › Environmental Science › Nature and Landscape Conservation › Ecology and Vegetation Dynamics Studies
- Keywords
- species coexistence, permanence, community assembly, acyclic graphs, invasibility, Lotka-Volterra model, deterministic population model, competing species, stochastic modeling
- MeSH terms
- Models, Biological, Population Dynamics, Ecosystem
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