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Population data and phylogenetic structure of Han population from Jiangsu province of China on GlobalFiler STR loci
Abstract
Forensic statistical parameters based on allelic frequencies of commonly used short tandem repeats were estimated for the Han population of Jiangsu province from P.R. China. The 6-dye GlobalFiler™ PCR amplification kit incorporates 21 autosomal STRs, providing reliable DNA typing results with enhanced the power of discrimination. Here, we analyzed the GlobalFiler™ STR loci in 516 unrelated individuals from Jiangsu Han population. A total of 256 alleles were observed ranging between 5 and 35.2 repeat units, and SE33 showed the greatest power of discrimination (34 alleles) in Jiangsu Han population. Most of the loci were found to be in the Hardy-Weinberg equilibrium after the Bonferroni correction with the exception of D3S1358. The combined power of exclusion (CPE) was 0.999999996353609, and the combined match probability (CMP) was 3.64 × 10 -25 . Phylogenetic parameters including pairwise genetic distances showed that Han population living in Jiangsu had closest genetic relationship with other East Asian populations. The present study provides precise reference database for forensic applications and population genetic studies.
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“Other specialized databases have been developed recently in this regard (e.g. (122–126)), starting off from human-centered research questions and expanding to examples of many other species, such as the tobacco plant (127), Trichophytum rubrum, a fungus causing skin disease (128), or the Cannabis plant to characterize the origin of hemp seeds (US Cannabis DNA database; (129)).”
From Tandem repeats lead to sequence assembly errors and impose multi-level challenges for genome and protein databases (2019) · cites this paper as [123]
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Self-citationMitochondrial DNA haplogroup B5 confers genetic susceptibility to Alzheimer's disease in Han Chinese
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Cited by
Tørresen, O. K., Star, B., Mier, P., Andrade-Navarro, M. A., Bateman, A., Jarnot, P., Gruca, A., Grynberg, M., Kajava, A. V., Promponas, V. J., et al. (2019) · Nucleic Acids Research · doi:10.1093/nar/gkz841 · Cited by 347
Metadata
- Authors
- Adnan, A., Zhan, X., Kasim, K., Rakha, A., & Xin, X. J.
- ORCID
- Adnan, Atif
- Venue
- International Journal of Legal Medicine
- Published
- 2018-03-02
- Volume
- 132
- Issue
- 5
- Pages
- 1301-1304
- ISSN
- 0937-9827
- 1437-1596
- Cited by
- 22
- References
- 21
- Language
- en
- Licence
- www.springer.com/tdm (tdm)
- Funders
- National Natural Science Foundation of China (81471826)
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- Adnan, A., Zhan, X., Kasim, K., Rakha, A., & Xin, X. J. (2018). Population data and phylogenetic structure of Han population from Jiangsu province of China on GlobalFiler STR loci. International Journal of Legal Medicine. https://doi.org/10.1007/s00414-018-1815-7
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