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Insights into the fluoride-resistant regulation mechanism of Acidithiobacillus ferrooxidans ATCC 23270 based on whole genome microarrays

Ma, Liyuan, Li, Qian, Shen, Li, Feng, Xue, Xiao, Yunhua, Tao, Jiemeng, Liang, Yili, Yin, Huaqun, Liu, Xueduan·2016·Journal of Industrial Microbiology and Biotechnology

Abstract

Acidophilic microorganisms involved in uranium bioleaching are usually suppressed by dissolved fluoride ions, eventually leading to reduced leaching efficiency. However, little is known about the regulation mechanisms of microbial resistance to fluoride. In this study, the resistance of Acidithiobacillus ferrooxidans ATCC 23270 to fluoride was investigated by detecting bacterial growth fluctuations and ferrous or sulfur oxidation. To explore the regulation mechanism, a whole genome microarray was used to profile the genome-wide expression. The fluoride tolerance of A. ferrooxidans cultured in the presence of FeSO4 was better than that cultured with the S0 substrate. The differentially expressed gene categories closely related to fluoride tolerance included those involved in energy metabolism, cellular processes, protein synthesis, transport, the cell envelope, and binding proteins. This study highlights that the cellular ferrous oxidation ability was enhanced at the lower fluoride concentrations. An overview of the cellular regulation mechanisms of extremophiles to fluoride resistance is discussed.

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Research works printed but not linked: 53

  1. Acosta, 2005, Identification of putative sulfurtransferase genes in the extremophilic Acidithiobacillus ferrooxidans ATCC 23270 genome: structural and functional characterization of the proteins, OMICS, 9, 13, 10.1089/omi.2005.9.13 · DOI
  2. Alvarez, 2004, Copper ions stimulate polyphosphate degradation and phosphate efflux in Acidithiobacillus ferrooxidans, Appl Environ Microbiol, 70, 5177, 10.1128/AEM.70.9.5177-5182.2004 · DOI
  3. Bhatti, 1998, Dissolution of uraninite in acid solutions, J Chem Technol Biotechnol, 73, 259, 10.1002/(SICI)1097-4660(1998110)73:3<259::AID-JCTB937>3.0.CO;2-Z · DOI
  4. Brierley, 2010, Fluoride toxicity in a chalcocite bioleach heap process, Hydrometallurgy, 104, 410, 10.1016/j.hydromet.2010.01.013 · DOI
  5. Brigham, 2012, Whole-genome microarray and gene deletion studies reveal regulation of the polyhydroxyalkanoate production cycle by the stringent response in Ralstonia eutropha H16, Appl Environ Microbiol, 78, 8033, 10.1128/AEM.01693-12 · DOI
  6. Chakraborty, 2014, Cadmium-induced oxidative stress tolerance in cadmium resistant Aspergillus foetidus: its possible role in cadmium bioremediation, Ecotoxicol Environ Saf, 106, 46, 10.1016/j.ecoenv.2014.04.007 · DOI
  7. Dopson, 2008, Silicate mineral dissolution during heap bioleaching, Biotechnol Bioeng, 99, 811, 10.1002/bit.21628 · DOI
  8. Dopson, 2014, Metal resistance in acidophilic microorganisms and its significance for biotechnologies, Appl Microbiol Biotechnol, 98, 8133, 10.1007/s00253-014-5982-2 · DOI
  9. Fisher, 2002, Microarray analysis of the Mycobacterium tuberculosis transcriptional response to the acidic conditions found in phagosomes, J Bacteriol, 184, 4025, 10.1128/JB.184.14.4025-4032.2002 · DOI
  10. Gao, 2004, Global transcriptome analysis of the heat shock response of Shewanella oneidensis, J Bacteriol, 186, 7796, 10.1128/JB.186.22.7796-7803.2004 · DOI
  11. Gao, 2006, Global transcriptome analysis of the cold shock response of Shewanella oneidensis MR-1 and mutational analysis of its classical cold shock proteins, J Bacteriol, 188, 4560, 10.1128/JB.01908-05 · DOI
  12. Gehrke, 2001, The EPS of Acidithiobacillus ferrooxidans—a model for structure-function relationships of attached bacteria and their physiology, Water Sci Technol, 43, 159, 10.2166/wst.2001.0365 · DOI
  13. Gholami, 2011, Bacterial leaching of a spent Mo–Co–Ni refinery catalyst using Acidithiobacillus ferrooxidans and Acidithiobacillus thiooxidans, Hydrometallurgy, 106, 26, 10.1016/j.hydromet.2010.11.011 · DOI
  14. Gutknecht, 1981, Hydrofluoric and nitric acid transport through lipid bilayer membranes, BBA Bioenergetics, 644, 153
  15. Helmann, 2001, Global transcriptional response of Bacillus subtilis to heat shock, J Bacteriol, 183, 7318, 10.1128/JB.183.24.7318-7328.2001 · DOI
  16. Jin, 2015, Biodegradation of di-n-butyl phthalate by Achromobacter sp. isolated from rural domestic wastewater, Int J Env Res Public Health, 12, 13510, 10.3390/ijerph121013510 · DOI
  17. Kates, 1996, Structural analysis of phospholipids and glycolipids in extremely halophilic archaebacteria, J Microbiol Methods, 25, 113, 10.1016/0167-7012(96)00010-3 · DOI
  18. Ko, 2013, The role of Acidithiobacillus ferrooxidans and Acidithiobacillus thiooxidans in arsenic bioleaching from soil, Environ Geochem Health, 35, 727, 10.1007/s10653-013-9530-2 · DOI
  19. Kruger, 2013, Bacterial metabolism of environmental arsenic—mechanisms and biotechnological applications, Appl Microbiol Biotechnol, 97, 3827, 10.1007/s00253-013-4838-5 · DOI
  20. Lee, 2005, Microbial removal of uranium in uranium-bearing black shale, Chemosphere, 59, 147, 10.1016/j.chemosphere.2004.10.006 · DOI
  21. Li, 2014, Community dynamics and function variation of a defined mixed bioleaching acidophilic bacterial consortium in the presence of fluoride, Ann Microbiol, 65, 121, 10.1007/s13213-014-0843-x · DOI
  22. Li, 2011, Insights into the pH up-shift responsive mechanism of Acidithiobacillus ferrooxidans by microarray transcriptome profiling, Folia Microbiol, 56, 439, 10.1007/s12223-011-0067-4 · DOI
  23. Liang, 2009, Microarray-based functional gene analysis of soil microbial communities during ozonation and biodegradation of crude oil, Chemosphere, 75, 193, 10.1016/j.chemosphere.2008.12.007 · DOI
  24. Luo, 2009, Comparative genomic analysis of Acidithiobacillus ferrooxidans strains using the A. ferrooxidans ATCC 23270 whole-genome oligonucleotide microarray, Can J Microbiol, 55, 587, 10.1139/W08-158 · DOI
  25. Ma, 2013, Comparative study of fluoride-tolerance of five typical bioleaching microorganisms, Adv Mat Res, 825, 214
  26. Marquis, 2003, Fluoride and organic weak acids as modulators of microbial physiology, FEMS Microbiol Rev, 26, 493, 10.1111/j.1574-6976.2003.tb00627.x · DOI · Paper page
  27. Matin, 1971, Enzymes of carbohydrate metabolism in Thiobacillus species, J Bacteriol, 107, 179, 10.1128/JB.107.1.179-186.1971 · DOI
  28. Pandey, 2013, Microbial processing of apatite rich low grade Indian uranium ore in bioreactor, Bioresour Technol, 128, 619, 10.1016/j.biortech.2012.10.159 · DOI
  29. Parsonage, 2014, Adverse effects of fuoride on hydrometallurgical operations, Miner Process Extr Metall Rev, 35, 44, 10.1080/08827508.2012.695306 · DOI
  30. Peng, 2013, Really active form of fluorine toxicity affecting Acidithiobacillus ferrooxidans activity in bioleaching uranium, T Nonferr Metal Soc, 23, 812, 10.1016/S1003-6326(13)62533-9 · DOI
  31. Pham, 2009, A silica-supported iron oxide catalyst capable of activating hydrogen peroxide at neutral pH values, Environ Sci Technol, 43, 8930, 10.1021/es902296k · DOI
  32. Qihou, 2012, Characterization of the acid stress response of Acidithiobacillus ferrooxidans ATCC 23270 based on the method of microarray, J Biol Res, 17, 3
  33. Qiu, 2011, Column bioleaching of uranium embedded in granite porphyry by a mesophilic acidophilic consortium, Bioresour Technol, 102, 4697, 10.1016/j.biortech.2011.01.038 · DOI
  34. Quatrini, 2005, Genomic insights into the iron uptake mechanisms of the biomining microorganism Acidithiobacillus ferrooxidans, J Ind Microbiol Biotechnol, 32, 606, 10.1007/s10295-005-0233-2 · DOI
  35. Raddadi, 2015, Biotechnological applications of extremophiles, extremozymes and extremolytes, Appl Microbiol Biotechnol, 99, 7907, 10.1007/s00253-015-6874-9 · DOI
  36. Rashidi, 2014, Optimization of operating parameters and rate of uranium bioleaching from a low-grade ore, J Radioanal Nucl Chem, 301, 341, 10.1007/s10967-014-3164-4 · DOI
  37. Rawlings, 2007, The microbiology of biomining: development and optimization of mineral-oxidizing microbial consortia, Microbiology, 153, 315, 10.1099/mic.0.2006/001206-0 · DOI
  38. Razzell, 1963, Isolation and properties of an iron-oxidizing Thiobacillus, J Bacteriol, 85, 595, 10.1128/JB.85.3.595-603.1963 · DOI
  39. Rodrigues, 2015, Biolixiviação de cobre com micro-organismos mesófilos e termófilos moderados: sulfetos secundários contendo flúor e placas de circuito impresso
  40. Silverman, 1959, Studies on the chemoautotrophic iron bacterium Ferrobacillus ferrooxidans: I. An improved medium and a harvesting procedure for securing high cell yields, J Bacteriol, 77, 642, 10.1128/JB.77.5.642-647.1959 · DOI
  41. Smoot, 2001, Global differential gene expression in response to growth temperature alteration in group A Streptococcus, Proc Natl Acad Sci USA, 98, 10416, 10.1073/pnas.191267598 · DOI
  42. Stepanauskas, 2005, Elevated microbial tolerance to metals and antibiotics in metal-contaminated industrial environments, Environ Sci Technol, 39, 3671, 10.1021/es048468f · DOI
  43. Stintzi, 2003, Gene expression profile of Campylobacter jejuni in response to growth temperature variation, J Bacteriol, 185, 2009, 10.1128/JB.185.6.2009-2016.2003 · DOI
  44. Sun, 2011, Down-regulation of energy metabolism in Alzheimer’s disease is a protective response of neurons to the microenvironment, J Alzheimer’s Dis, 28, 389, 10.3233/JAD-2011-111313 · DOI
  45. Suzuki, 1999, Effect of various ions, pH, and osmotic pressure on oxidation of elemental sulfur by Thiobacillus thiooxidans, Appl Environ Microbiol, 65, 5163, 10.1128/AEM.65.11.5163-5168.1999 · DOI
  46. Valdes, 2008, Acidithiobacillus ferrooxidans metabolism: from genome sequence to industrial applications, BMC Genom, 9, 597, 10.1186/1471-2164-9-597 · DOI
  47. Veloso, 2012, The effects of fluoride and aluminum ions on ferrous-iron oxidation and copper sulfide bioleaching with Sulfobacillus thermosulfidooxidans, Biochem Eng J, 62, 48, 10.1016/j.bej.2012.01.003 · DOI
  48. Vera, 2013, Progress in bioleaching: fundamentals and mechanisms of bacterial metal sulfide oxidation—part A, Appl Microbiol Biotechnol, 97, 7529, 10.1007/s00253-013-4954-2 · DOI
  49. Watkin, 2016, Adaption to extreme acidity and osmotic stress
  50. Wen, 2016, Research progress in biohydrometallurgy of rare metals and heavy nonferrous metals with an emphasis on China, Rare Met, 35, 433, 10.1007/s12598-016-0739-y · DOI
  51. Xiong, 2012, Assessing the microbial community and functional genes in a vertical soil profile with long-term arsenic contamination, PLoS One, 7, e50507, 10.1371/journal.pone.0050507 · DOI
  52. Xu, 2014, Elevated nitrate enriches microbial functional genes for potential bioremediation of complexly contaminated sediments, ISME J, 8, 1932, 10.1038/ismej.2014.42 · DOI
  53. Xu, 2013, Comparative study of nickel resistance of pure culture and co-culture of Acidithiobacillus thiooxidans and Leptospirillum ferriphilum, Arch Microbiol, 195, 637, 10.1007/s00203-013-0900-z · DOI

Cited by

Metadata

Authors
Ma, L., Li, Q., Shen, L., Feng, X., Xiao, Y., Tao, J., Liang, Y., Yin, H., & Liu, X.
Venue
Journal of Industrial Microbiology and Biotechnology
Published
2016-10-01
Volume
43
Issue
10
Pages
1441-1453
ISSN
  • 1476-5535
  • 1367-5435
Cited by
19
References
0
Language
en
Funders
  • National Natural Science Foundation of China (NSFC 31570113)
  • Fundamental Research Funds for the Central Universities of Central South University (2016zzts110)

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CoChat. (2026). Citation check: Insights into the fluoride-resistant regulation mechanism of Acidithiobacillus ferrooxidans ATCC 23270 based on whole genome microarrays. https://app.cochat.ai/papers/10.1007/s10295-016-1827-6
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Ma, L., Li, Q., Shen, L., Feng, X., Xiao, Y., Tao, J., Liang, Y., Yin, H., & Liu, X. (2016). Insights into the fluoride-resistant regulation mechanism of Acidithiobacillus ferrooxidans ATCC 23270 based on whole genome microarrays. Journal of Industrial Microbiology and Biotechnology. https://doi.org/10.1007/s10295-016-1827-6