Cited by 82Genetic Associations and EpidemiologyNutrition, Genetics, and DiseaseDiabetes and associated disorders

The Genetic Epidemiology of Type 2 Diabetes: Opportunities for Health Translation

Open access
Meigs, James B.·2019·Current Diabetes Reports

Abstract

Purpose of review Genome-wide association studies have delineated the genetic architecture of type 2 diabetes. While functional studies to identify target transcripts are ongoing, new genetic knowledge can be translated directly to health applications. The review covers several translation directions but focuses on genomic polygenic scores for screening and prevention. Recent findings Over 400 genomic variants associated with T2D and its related quantitative traits are now known. Genetic scores comprising dozens to millions of associated variants can predict incident T2D. However, measurement of body mass index is more efficient than genetic scores to detect T2D risk groups, and knowledge of T2D genetic risk alone seems insufficient to improve health. Genetically determined metabolic sub-phenotypes can be identified by clustering variants associated with physiological axes like insulin resistance. Genetic sub-phenotyping may be a way forward to identify specific individual phenotypes for prevention and treatment. Genomic polygenic scores for T2D can predict incident diabetes but may not be useful to improve health overall. Genetic detection of T2D sub-phenotypes could be useful to personalize screening and care.

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  • Risk factors for type 2 diabetes include overweight and obesity, physical inactivity, age, family history, race and ethnicity, history of gestational diabetes, and presence of other conditions (eg, hypertension, dyslipidemia, cardiovascular disease).

    “Risk factors for type 2 diabetes include overweight and obesity, physical inactivity, age, family history, race and ethnicity, history of gestational diabetes, and presence of other conditions (eg, hypertension, dyslipidemia, cardiovascular disease).9–14”

    From Diagnosis and Treatment of Type 2 Diabetes in Adults (2025) · cites this paper as [13]

    The “Genomic Risk Scores for Prediction and Personalization” section describes a type 2 diabetes prediction model using age, parental diabetes, BMI, blood pressure, HDL cholesterol, and triglycerides. The “Genomic Polygenic Prediction” section also links obesity to elevated risk. Our copy does not establish physical inactivity, gestational diabetes, or cardiovascular disease as risk factors, so it does not support the full list. (LLM, conf=0.87)

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  1. [2]Mahajan A, Taliun D, Thurner M, Robertson NR, Torres JM, Rayner NW, Fine-mapping type 2 diabetes loci to single-variant resolution using high-density imputation and islet-specific epigenome maps. Nat Genet. 2018; 50(11): 1505– 13 30297969 PMC6287706 •• This genome-wide association study of more than one million people of European ancestry is the current “definitive” framework for T2D common variant genetic architecture. Supplementary Figure 10 shows the distribution of a genomic polygenic score for T2D in individuals of European ancestry.
  2. [3]Mahajan A, Wessel J, Willems SM, Zhao W, Robertson NR, Chu AY, Refining the accuracy of validated target identification through coding variant fine-mapping in type 2 diabetes. Nat Genet. 2018; 50(4): 559– 71. 29632382 PMC5898373
  3. [4]Fuchsberger C, Flannick J, Teslovich TM, Mahajan A, Agarwala V, Gaulton KJ, The genetic architecture of type 2 diabetes. Nature. 2016; 536(7614): 41– 7. 27398621 PMC5034897
  4. [5]Pasquali L, Gaulton KJ, Rodriguez-Segui SA, Mularoni L, Miguel-Escalada I, Akerman I, Pancreatic islet enhancer clusters enriched in type 2 diabetes risk-associated variants. Nat Genet. 2014; 46(2): 136– 43. 24413736 PMC3935450
  5. [6]van de Bunt M, Manning Fox JE, Dai X, Barrett A, Grey C, Li L, Transcript expression data from human islets links regulatory signals from genome-wide association studies for type 2 diabetes and glycemic traits to their downstream effectors. PLoS Genet. 2015; 11(12): e1005694. 26624892 PMC4666611
  6. [7]Varshney A, Scott LJ, Welch RP, Erdos MR, Chines PS, Narisu N, Genetic regulatory signatures underlying islet gene expression and type 2 diabetes. Proc Natl Acad Sci U S A. 2017; 114(9): 2301– 6. 28193859 PMC5338551
  7. [8]Pan DZ, Garske KM, Alvarez M, Bhagat YV, Boocock J, Nikkola E, Integration of human adipocyte chromosomal interactions with adipose gene expression prioritizes obesity-related genes from GWAS. Nat Commun. 2018; 9(1): 1512. 29666371 PMC5904163
  8. [9]Scott LJ, Erdos MR, Huyghe JR, Welch RP, Beck AT, Wolford BN, The genetic regulatory signature of type 2 diabetes in human skeletal muscle. Nat Commun. 2016; 7: 11764. 27353450 PMC4931250
  9. [10]Roman TS, Cannon ME, Vadlamudi S, Buchkovich ML, Wolford BN, Welch RP, A type 2 diabetes-associated functional regulatory variant in a pancreatic islet enhancer at the ADCY5 locus. Diabetes. 2017; 66(9): 2521– 30. 28684635 PMC5860374
  10. [11]Kycia I, Wolford BN, Huyghe JR, Fuchsberger C, Vadlamudi S, Kursawe R, A common type 2 diabetes risk variant potentiates activity of an evolutionarily conserved islet stretch enhancer and increases C2CD4A and C2CD4B expression. Am J Hum Genet. 2018; 102(4): 620– 35. 29625024 PMC5985342
  11. [12]Akerman I, Tu Z, Beucher A, Rolando DMY, Sauty-Colace C, Benazra M, Human pancreatic beta cell lncRNAs control cell-specific regulatory networks. Cell Metab. 2017; 25(2): 400– 11. 28041957 PMC5300904
  12. [13]Arnes L, Akerman I, Balderes DA, Ferrer J, Sussel L. betalinc1 encodes a long noncoding RNA that regulates islet beta-cell formation and function. Genes Dev. 2016; 30(5): 502– 7. 26944677 PMC4782045
  13. [14]Moran I, Akerman I, van de Bunt M, Xie R, Benazra M, Nammo T, Human beta cell transcriptome analysis uncovers lncRNAs that are tissue-specific, dynamically regulated, and abnormally expressed in type 2 diabetes. Cell Metab. 2012; 16(4): 435– 48. 23040067 PMC3475176
  14. [15]Flannick J, Florez JC. Type 2 diabetes: genetic data sharing to advance complex disease research. Nat Rev Genet. 2016; 17(9): 535– 49. 27402621
  15. [16]Sigma_Type_2_Diabetes_Consortium, Williams AL, Jacobs SB, Moreno-Macias H, Huerta-Chagoya A, Churchhouse C, Sequence variants in SLC16A11 are a common risk factor for type 2 diabetes in Mexico. Nature. 2014; 506(7486): 97– 101. 24390345 PMC4127086
  16. [17]Gusarova V, O’Dushlaine C, Teslovich TM, Benotti PN, Mirshahi T, Gottesman O, Genetic inactivation of ANGPTL4 improves glucose homeostasis and is associated with reduced risk of diabetes. Nat Commun. 2018; 9(1): 2252. 29899519 PMC5997992
  17. [18]Davey Smith G, Hemani G. Mendelian randomization: genetic anchors for causal inference in epidemiological studies. Hum Mol Genet. 2014; 23(R1): R89– 98. 25064373 PMC4170722
  18. [19]Ahmad OS, Morris JA, Mujammami M, Forgetta V, Leong A, Li R, A Mendelian randomization study of the effect of type-2 diabetes on coronary heart disease. Nat Commun. 2015; 6: 7060. 26017687 PMC4458864
  19. [20]Merino J, Leong A, Posner DC, Porneala B, Masana L, Dupuis J, Genetically driven hyperglycemia increases risk of coronary artery disease separately from type 2 diabetes. Diabetes Care. 2017; 40(5): 687– 93. 28298470 PMC5399655
  20. [21]Leong A, Chen J, Wheeler E, Hivert MF, Liu CT, Merino J, Mendelian randomization analysis of hemoglobin A1c as a risk factor for coronary artery disease. Diabetes Care. 2019: dc181712. PMC6609962 30659074
  21. [23]Scott RA, Freitag DF, Li L, Chu AY, Surendran P, Young R, A genomic approach to therapeutic target validation identifies a glucose-lowering GLP1R variant protective for coronary heart disease. Sci Transl Med. 2016; 8(341): 341ra76. PMC5219001 27252175
  22. [25]Paterson AD. HbA1c for type 2 diabetes diagnosis in Africans and African Americans: personalized medicine NOW! PLoS Med. 2017; 14(9): e1002384. 28898251 PMC5595287
  23. [28]Vassy JL, Hivert MF, Porneala B, Dauriz M, Florez JC, Dupuis J, Polygenic type 2 diabetes prediction at the limit of common variant detection. Diabetes. 2014; 63(6): 2172– 82. 24520119 PMC4030114
  24. [30]Flannick J, Beer NL, Bick AG, Agarwala V, Molnes J, Gupta N, Assessing the phenotypic effects in the general population of rare variants in genes for a dominant Mendelian form of diabetes. Nat Genet. 2013; 45(11): 1380– 5. 24097065 PMC4051627
  25. [31]Wilson PW, Meigs JB, Sullivan L, Fox CS, Nathan DM, D’Agostino RB Sr. Prediction of incident diabetes mellitus in middle-aged adults: the Framingham offspring study. Arch Intern Med. 2007; 167(10): 1068– 74. 17533210
  26. [32]Grant RW, Hivert M, Pandiscio JC, Florez JC, Nathan DM, Meigs JB. The clinical application of genetic testing in type 2 diabetes: a patient and physician survey. Diabetologia. 2009; 52(11): 2299– 305. 19727660 PMC3829642
  27. [33]Grant RW, O’Brien KE, Waxler JL, Vassy JL, Delahanty LM, Bissett LG, Personalized genetic risk counseling to motivate diabetes prevention: a randomized trial. Diabetes Care. 2013; 36(1): 13– 9 22933432 PMC3526219 • This randomized, controlled trial of genetic testing showed that knowledge of genetic risk for T2D did not change health behavior.
  28. [34]Vassy JL, He W, Florez JC, Meigs JB, Grant RW. Six-year diabetes incidence after genetic risk testing and counseling: a randomized clinical trial. Diabetes Care. 2018; 41(3): e25– e6. 29305403 PMC5829962
  29. [35]Corbin LJ, Tan VY, Hughes DA, Wade KH, Paul DS, Tansey KE, Formalising recall by genotype as an efficient approach to detailed phenotyping and causal inference. Nat Commun. 2018; 9(1): 711. 29459775 PMC5818506
  30. [36]Lotta LA, Gulati P, Day FR, Payne F, Ongen H, van de Bunt M, Integrative genomic analysis implicates limited peripheral adipose storage capacity in the pathogenesis of human insulin resistance. Nat Genet. 2017; 49(1): 17– 26. 27841877 PMC5774584
  31. [38]Wilson PWF, D’Agostino RB Sr, Parise H, Sullivan L, Meigs JB. The metabolic syndrome as a precursor of cardiovascular disease and type 2 diabetes mellitus. Circulation. 2005; 112: 3066– 72. 16275870
  32. [39]Ahlqvist E, Storm P, Karajamaki A, Martinell M, Dorkhan M, Carlsson A, Novel subgroups of adult-onset diabetes and their association with outcomes: a data-driven cluster analysis of six variables. Lancet Diabetes Endocrinol. 2018; 6(5): 361– 9. 29503172

Cited by

Sorted by citations

Authors
Meigs, J. B.
Affiliations
Broad Institute (US)
Corresponding author
Meigs, James B.
Venue
Current Diabetes Reports
Published
2019-07-22
Volume
19
Issue
8
Pages
62-62
ISSN
  • 1534-4827 (ISSN-L)
  • 1539-0829
OpenAlex
W2963636941
Cited by
82
References
6
Citations by year
2026: 11 · 2025: 11 · 2024: 15 · 2023: 18 · 2022: 13 · 2021: 6 · 2020: 5 · 2019: 2 · 2018: 1
FWCI
0.88
Type
journal article
Language
en
Open access
Locations
  • Current Diabetes Reports (publishedVersion)
  • PubMed (publishedVersion)
  • PubMed Central (acceptedVersion)
Funders
National Institute of Diabetes and Digestive and Kidney Diseases (U01DK078616, UM1DK078616)
Topics
  • Life Sciences › Biochemistry, Genetics and Molecular Biology › Genetics › Genetic Associations and Epidemiology
  • Life Sciences › Biochemistry, Genetics and Molecular Biology › Genetics › Nutrition, Genetics, and Disease
  • Life Sciences › Biochemistry, Genetics and Molecular Biology › Genetics › Diabetes and associated disorders
Keywords
type 2 diabetes, genetic epidemiology, polygenic risk score, genome-wide association study, diabetes risk prediction, diabetes screening, diabetes prevention, body mass index, insulin resistance, personalized medicine
MeSH terms
Diabetes Mellitus, Type 2, Humans, Insulin Resistance, Molecular Epidemiology, Genetic Predisposition to Disease, Polymorphism, Single Nucleotide, Genome-Wide Association Study

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