MS analysis of chondroitin polymerization: Effects of Mn2+ ions on the stability of UDP-sugars and chondroitin synthesis
Abstract
Chondroitin polymerase from Escherichia coli strain K4 (K4CP) synthesizes chondroitin (CH) polysaccharides by the alternate addition of N-acetyl-D-galactosamine (GalNAc) and D-glucuronic acid (GlcA) to acceptor CH oligosaccharides in the presence of Mn(2+) ions. In this study, we applied matrix-assisted laser desorption ionization and time-of-flight mass spectrometry (MALDI-TOF MS) for the further characterization of the products synthesized by K4CP from CH hexasaccharide as an initial acceptor and UDP-GalNAc and UDP-GlcA as donors. The analysis identified individual CH chains of various lengths and enabled the calculation of their average molecular weights. The ion peaks of the CH chains synthesized in the short-time reactions demonstrated not only the alternate addition of GlcA and GalNAc but also the more frequent transfer of GlcA and GalNAc, consistent with our previous kinetic data. In contrast, the MS spectra of the chains synthesized in the long-time reaction showed that CH chains containing GalNAc at the nonreducing ends were more abundant than those containing GlcA. We found that this inconsistency was due to the preferential decomposition of UDP-GlcA by Mn(2+) ions. We defined the optimal conditions to yield further elongation of the CH chains that have nearly equal numbers of GlcA and GalNAc residues at the nonreducing ends.
Integrity signals
Registry
Cites
Statistics
Claims the paper makes
Claims other papers make about this one
Each is checked against this paper’s own text: does it say what the citing paper says it does?
UDP-GlcNAc synthesis kinetics were well identified in the original calibration, since UDP-GlcNAc is chemically stable and comparatively reliable to measure.
“The result is reinforced by the fidelity of the UDP-GlcNAc submodel, since UDP-GlcNAc is chemically stable and comparatively reliable to measure [55], so its synthesis kinetics were well identified in the original calibration.”
From Soft sensing of intracellular states for CHO cell bioprocessing with Ensemble Kalman Filters (2026) · cites this paper as [55]
Cited by
Sorted by citations
Soft sensing of intracellular states for CHO cell bioprocessing with Ensemble Kalman Filters
Yu, L., del Rio Chanona, A., & Kontoravdi, C. (2026) · Journal of Process Control · doi:10.1016/j.jprocont.2026.103875
- Authors
- Sugiura, N., Shimokata, S., Watanabe, H., & Kimata, K.
- Affiliations
- Institute for Molecular Science of Medicine, Aichi Medical University (JP)
- Venue
- Analytical Biochemistry
- Publisher
- Elsevier BV
- Published
- 2007-06
- Volume
- 365
- Issue
- 1
- Pages
- 62-73
- ISSN
- 0003-2697 (ISSN-L)
- OpenAlex
- W2080089207
- Cited by
- 19
- References
- 0
- Citations by year
- 2026: 1 · 2025: 1 · 2023: 2 · 2022: 1 · 2018: 1 · 2016: 3 · 2013: 1 · 2012: 2
- FWCI
- 0.64
- Type
- journal article
- Language
- en
- Open access
- closed
- Locations
- Analytical Biochemistry (publishedVersion)
- PubMed (publishedVersion)
- Funders
- New Energy and Industrial Technology Development Organization
- Ministry of Education, Culture, Sports, Science and Technology
- Topics
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Cell Biology › Proteoglycans and glycosaminoglycans research
- Physical Sciences › Chemistry › Organic Chemistry › Carbohydrate Chemistry and Synthesis
- Physical Sciences › Chemistry › Spectroscopy › Mass Spectrometry Techniques and Applications
- Keywords
- manganese ions, UDP-glucuronic acid, polysaccharide synthesis
- MeSH terms
- Carbohydrate Sequence, Catalysis, Cations, Chondroitin, Chondroitinases and Chondroitin Lyases, Hexosyltransferases, Hydrolysis, Kinetics, Manganese, Models, Chemical, Molecular Weight, Substrate Specificity, Uridine Diphosphate Glucuronic Acid, Uridine Diphosphate N-Acetylgalactosamine, Uridine Diphosphate N-Acetylglucosamine, Uridine Diphosphate Sugars, Spectrometry, Mass, Matrix-Assisted Laser Desorption-Ionization
About these checks
Registry, retraction, Cites and statistics results are computed, not judged, with one exception: a printed reference that no index lists is read once by a model before it counts as a citation error. Claims are extracted by a model and kept only when their quote appears verbatim in the text; each cited source is then checked, with a model’s help, for whether it says what the claim relies on. Those verdicts can be wrong — read the claim’s quote and the cited source before relying on one.
Statistics and arithmetic are recomputed, not judged.
Confidence bands are shown only for fields calibrated on our annotated test set. None is calibrated yet, so no band is shown.
What counts as a claim ›How we measure confidence ›How we check this ›
Are you an author, or do you see a problem with this page? Request a review