Radical AdoMet enzymes in complex metal cluster biosynthesis
Abstract
Radical S-adenosylmethionine (AdoMet) enzymes comprise a large superfamily of proteins that engage in a diverse series of biochemical transformations through generation of the highly reactive 5'-deoxyadenosyl radical intermediate. Recent advances into the biosynthesis of unique iron-sulfur (FeS)-containing cofactors such as the H-cluster in [FeFe]-hydrogenase, the FeMo-co in nitrogenase, as well as the iron-guanylylpyridinol (FeGP) cofactor in [Fe]-hydrogenase have implicated new roles for radical AdoMet enzymes in the biosynthesis of complex inorganic cofactors. Radical AdoMet enzymes in conjunction with scaffold proteins engage in modifying ubiquitous FeS precursors into unique clusters, through novel amino acid decomposition and sulfur insertion reactions. The ability of radical AdoMet enzymes to modify common metal centers to unusual metal cofactors may provide important clues into the stepwise evolution of these and other complex bioinorganic catalysts. This article is part of a Special Issue entitled: Radical SAM enzymes and Radical Enzymology.
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Enzymes of core carbon and energy pathways in modern anaerobic autotrophs are replete with FeS, FeNiS and MoS (WS) centres.
“This is an important similarity to modern anaerobic autotrophs, whose enzymes of core carbon and energy pathways are replete with FeS, FeNiS and MoS (WS) centres, FeS and NiS usually being incorporated into proteins via cysteine residues [54–58], Mo and W usually being complexed by thiols of the molybdopterin cofactor MoCo [59].”
From Early bioenergetic evolution (2013) · cites this paper as [58]
Cites
Iron-sulfur clusters: nature's modular, multipurpose structures
Beinert, H., Holm, R. H., & Münck, E. (1997) · Science · doi:10.1126/science.277.5326.653 · Cited by 1,944 · see citing works
Structure, function, and formation of biological iron-sulfur clusters
Johnson, D. C., Dean, D. R., Smith, A. D., & Johnson, M. K. (2005) · Annual Review of Biochemistry · doi:10.1146/annurev.biochem.74.082803.133518 · Cited by 1,438 · see citing works
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Sousa, F. L., Thiergart, T., Landan, G., Nelson-Sathi, S., Pereira, I. A. C., Allen, J. F., Lane, N., & Martin, W. F. (2013) · Philosophical Transactions of the Royal Society B: Biological Sciences · doi:10.1098/rstb.2013.0088 · Cited by 286 · see citing works
“This is an important similarity to modern anaerobic autotrophs, whose enzymes of core carbon and energy pathways are replete with FeS, FeNiS and MoS (WS) centres, FeS and NiS usually being incorporated into proteins via cysteine residues [54–58], Mo and W usually being complexed by thiols of the molybdopterin cofactor…”
Background
- Authors
- Duffus, B. R., Hamilton, T. L., Shepard, E. M., Boyd, E. S., Peters, J. W., & Broderick, J. B.
- Affiliations
- Montana State University (US)
- Corresponding author
- Peters, John W.
- Broderick, Joan B.
- ORCID
- Venue
- Biochimica et Biophysica Acta (BBA) - Proteins and Proteomics
- Publisher
- Elsevier BV
- Published
- 2012-11
- Volume
- 1824
- Issue
- 11
- Pages
- 1254-1263
- ISSN
- 1570-9639 (ISSN-L)
- OpenAlex
- W2074107575
- Cited by
- 26
- References
- 2
- Citations by year
- 2022: 1 · 2021: 3 · 2020: 2 · 2019: 1 · 2017: 2 · 2016: 1 · 2015: 1 · 2014: 7 · 2013: 4 · 2012: 3
- FWCI
- 0.21
- Type
- journal article
- Language
- en
- Open access
- closed
- Locations
- Biochimica et Biophysica Acta (BBA) - Proteins and Proteomics (publishedVersion)
- PubMed (publishedVersion)
- Funders
- National Aeronautics and Space Administration
- Topics
- Physical Sciences › Energy › Renewable Energy, Sustainability and the Environment › Metalloenzymes and iron-sulfur proteins
- Physical Sciences › Chemistry › Inorganic Chemistry › Metal-Catalyzed Oxygenation Mechanisms
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › Porphyrin Metabolism and Disorders
- Keywords
- radical SAM enzymes, S-adenosylmethionine, 5'-deoxyadenosyl radical, iron-sulfur cluster assembly, H-cluster, [FeFe]-hydrogenase, nitrogenase, scaffold proteins, sulfur insertion, amino acid decomposition
- MeSH terms
- Bacterial Proteins, Free Radicals, Hydrogenase, Iron, Iron-Sulfur Proteins, Models, Molecular, Molybdoferredoxin, Nitrogenase, Phylogeny, S-Adenosylmethionine, Sulfur, Evolution, Molecular, Biocatalysis, Coordination Complexes
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