Cited by 26Metalloenzymes and iron-sulfur proteinsMetal-Catalyzed Oxygenation MechanismsPorphyrin Metabolism and Disorders

Radical AdoMet enzymes in complex metal cluster biosynthesis

Duffus, Benjamin R., Hamilton, Trinity L., Shepard, Eric M., Boyd, Eric S., Peters, John W., Broderick, Joan B.·2012·Biochimica et Biophysica Acta (BBA) - Proteins and Proteomics

Abstract

Radical S-adenosylmethionine (AdoMet) enzymes comprise a large superfamily of proteins that engage in a diverse series of biochemical transformations through generation of the highly reactive 5'-deoxyadenosyl radical intermediate. Recent advances into the biosynthesis of unique iron-sulfur (FeS)-containing cofactors such as the H-cluster in [FeFe]-hydrogenase, the FeMo-co in nitrogenase, as well as the iron-guanylylpyridinol (FeGP) cofactor in [Fe]-hydrogenase have implicated new roles for radical AdoMet enzymes in the biosynthesis of complex inorganic cofactors. Radical AdoMet enzymes in conjunction with scaffold proteins engage in modifying ubiquitous FeS precursors into unique clusters, through novel amino acid decomposition and sulfur insertion reactions. The ability of radical AdoMet enzymes to modify common metal centers to unusual metal cofactors may provide important clues into the stepwise evolution of these and other complex bioinorganic catalysts. This article is part of a Special Issue entitled: Radical SAM enzymes and Radical Enzymology.

Integrity signals

Registry

Crossref · 10.1016/j.bbapap.2012.01.002

Cites

2 of 2 references verified0 citation errors · 0 not checkable

Statistics

Recomputing p-values needs the paper’s full text.

Claims the paper makes

We couldn’t retrieve this paper’s full text, so its claims and self-check weren’t run. The registry and citation checks still apply.

Claims other papers make about this one

Each is checked against this paper’s own text: does it say what the citing paper says it does?

  • Enzymes of core carbon and energy pathways in modern anaerobic autotrophs are replete with FeS, FeNiS and MoS (WS) centres.

    “This is an important similarity to modern anaerobic autotrophs, whose enzymes of core carbon and energy pathways are replete with FeS, FeNiS and MoS (WS) centres, FeS and NiS usually being incorporated into proteins via cysteine residues [54–58], Mo and W usually being complexed by thiols of the molybdopterin cofactor MoCo [59].”

    From Early bioenergetic evolution (2013) · cites this paper as [58]

Cites

Flagged first, then by citations

Cited by

Sorted by citations

  • Early bioenergetic evolution

    Sousa, F. L., Thiergart, T., Landan, G., Nelson-Sathi, S., Pereira, I. A. C., Allen, J. F., Lane, N., & Martin, W. F. (2013) · Philosophical Transactions of the Royal Society B: Biological Sciences · doi:10.1098/rstb.2013.0088 · Cited by 286 · see citing works

    “This is an important similarity to modern anaerobic autotrophs, whose enzymes of core carbon and energy pathways are replete with FeS, FeNiS and MoS (WS) centres, FeS and NiS usually being incorporated into proteins via cysteine residues [54–58], Mo and W usually being complexed by thiols of the molybdopterin cofactor…”
    Background

Authors
Duffus, B. R., Hamilton, T. L., Shepard, E. M., Boyd, E. S., Peters, J. W., & Broderick, J. B.
Affiliations
Montana State University (US)
Corresponding author
  • Peters, John W.
  • Broderick, Joan B.
Venue
Biochimica et Biophysica Acta (BBA) - Proteins and Proteomics
Publisher
Elsevier BV
Published
2012-11
Volume
1824
Issue
11
Pages
1254-1263
ISSN
1570-9639 (ISSN-L)
OpenAlex
W2074107575
Cited by
26
References
2
Citations by year
2022: 1 · 2021: 3 · 2020: 2 · 2019: 1 · 2017: 2 · 2016: 1 · 2015: 1 · 2014: 7 · 2013: 4 · 2012: 3
FWCI
0.21
Type
journal article
Language
en
Open access
closed
Locations
  • Biochimica et Biophysica Acta (BBA) - Proteins and Proteomics (publishedVersion)
  • PubMed (publishedVersion)
Funders
National Aeronautics and Space Administration
Topics
  • Physical Sciences › Energy › Renewable Energy, Sustainability and the Environment › Metalloenzymes and iron-sulfur proteins
  • Physical Sciences › Chemistry › Inorganic Chemistry › Metal-Catalyzed Oxygenation Mechanisms
  • Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › Porphyrin Metabolism and Disorders
Keywords
radical SAM enzymes, S-adenosylmethionine, 5'-deoxyadenosyl radical, iron-sulfur cluster assembly, H-cluster, [FeFe]-hydrogenase, nitrogenase, scaffold proteins, sulfur insertion, amino acid decomposition
MeSH terms
Bacterial Proteins, Free Radicals, Hydrogenase, Iron, Iron-Sulfur Proteins, Models, Molecular, Molybdoferredoxin, Nitrogenase, Phylogeny, S-Adenosylmethionine, Sulfur, Evolution, Molecular, Biocatalysis, Coordination Complexes

About these checks

Registry, retraction, Cites and statistics results are computed, not judged, with one exception: a printed reference that no index lists is read once by a model before it counts as a citation error. Claims are extracted by a model and kept only when their quote appears verbatim in the text; each cited source is then checked, with a model’s help, for whether it says what the claim relies on. Those verdicts can be wrong — read the claim’s quote and the cited source before relying on one.

Statistics and arithmetic are recomputed, not judged.

Confidence bands are shown only for fields calibrated on our annotated test set. None is calibrated yet, so no band is shown.

What counts as a claim ›How we measure confidence ›How we check this ›

Are you an author, or do you see a problem with this page? Request a review