The aging lysosome: An essential catalyst for late-onset neurodegenerative diseases
Open accessAbstract
Lysosomes figure prominently in theories of aging as the proteolytic system most responsible for eliminating growing burdens of damaged proteins and organelles in aging neurons and other long lived cells. Newer evidence shows that diverse experimental measures known to extend lifespan in invertebrate aging models share the property of boosting lysosomal clearance of substrates through the autophagy pathway. Maintaining an optimal level of lysosome acidification is particularly crucial for these anti-aging effects. The exceptional dependence of neurons on fully functional lysosomes is reflected by the neurological phenotypes that develop in congenital lysosomal storage disorders, which commonly present as severe neurodevelopmental or neurodegenerative conditions even though the lysosomal deficit maybe systemic. Similar connections are now being appreciated between primary lysosomal deficit and the risk for late age-onset neurodegenerative disorders. In diseases such as Alzheimer's and Parkinson's, as in aging alone, primary lysosome dysfunction due to acidification impairment is emerging as a frequent theme, supported by the growing list of familial neurodegenerative disorders that involve primary vATPase dysfunction. The additional cellular roles played by intraluminal pH in sensing nutrient and stress and modulating cellular signaling have further expanded the possible ways that lysosomal pH dysregulation in aging and disease can disrupt neuronal function. Here, we consider the impact of cellular aging on lysosomes and how the changes during aging may create the tipping point for disease emergence in major late-age onset neurodegenerative disorders.
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NCL-associated genes typically encode proteins involved in proteolysis, lipid catabolism, or have unidentified lysosomal roles.
“The genes associated with NCLs are typically in proteins involved in proteolysis (such as the cathepsin proteases), lipid catabolism, or have unidentified roles in the lysosome (e.g., MSFD8).118”
From The lysosome and proteostatic stress at the intersection of pediatric neurological disorders and adult neurodegenerative diseases (2025) · cites this paper as [118]
The Introduction (“Aging lysosomes – a critical precondition for late-age onset neurodegenerative diseases”; page unavailable) links progranulin mutations to childhood NCL, but does not classify NCL-associated genes by protein function. Searches for MFSD8, proteolysis, lipid catabolism, and NCL-associated genes found no passage in our copy stating the claimed categories. (LLM, conf=0.73)
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- Afshari C, and Barret J (1996). Molecular genetics of in vitro cellular senescence In Cellular Aging and Cell Death, Holbrrok N, Martin G, and Lockshin R, eds. (New York: Wiley-Liss, Inc.), pp. 109– 121.
- Almeida PC, Nantes IL, Chagas JR, Rizzi CC, Faljoni-Alario A, Carmona E, Juliano L, Nader HB, and Tersariol IL (2001). Cathepsin B activity regulation. Heparin-like glycosaminogylcans protect human cathepsin B from alkaline pH-induced inactivation. The Journal of biological chemistry 276, 944– 951. 11016923
- Amano T, Nakanishi H, Kondo T, Tanaka T, Oka M, and Yamamoto K (1995). Age-related changes in cellular localization and enzymatic activities of cathepsins B, L and D in the rat trigeminal ganglion neuron. Mechanisms of ageing and development 83, 133– 141. 8583832
- Barone E (2016). Editorial: Oxidative Stress and Alzheimer Disease: Where Do We Stand? Current Alzheimer research 13, 108– 111. 26750609
- Bednarski E, and Lynch G (1996). Cytosolic proteolysis of tau by cathepsin D in hippocampus following suppression of cathepsins B and L. Journal of neurochemistry 67, 1846– 1855. 8863489
- Bednarski E, Ribak CE, and Lynch G (1997). Suppression of cathepsins B and L causes a proliferation of lysosomes and the formation of meganeurites in hippocampus. JNeurosci 17, 4006– 4021. 9151717 PMC6573562
- Bergmann M, Schutt F, Holz FG, and Kopitz J (2004). Inhibition of the ATP-driven proton pump in RPE lysosomes by the major lipofuscin fluorophore A2-E may contribute to the pathogenesis of age-related macular degeneration. FASEB journal: official publication of the Federation of American Societies for Experimental Biology 18, 562– 564. 14715704
- Blom T, Li S, Dichlberger A, Back N, Kim YA, Loizides-Mangold U, Riezman H, Bittman R, and Ikonen E (2015). LAPTM4B facilitates late endosomal ceramide export to control cell death pathways. Nature chemical biology 11, 799– 806. 26280656
- Boland B, Yu WH, Corti O, Mollereau B, Henriques A, Bezard E, Pastores GM, Rubinsztein DC, Nixon RA, Duchen MR, (2018). Promoting the clearance of neurotoxic proteins in neurodegenerative disorders of ageing. Nature reviews Drug discovery 17, 660– 688. 30116051 PMC6456907
- Bond S, and Forgac M (2008). The Ras/cAMP/protein kinase A pathway regulates glucose-dependent assembly of the vacuolar (H+)-ATPase in yeast. The Journal of biological chemistry 283, 36513– 36521. 18936098 PMC2605986
- Boya P, Andreau K, Poncet D, Zamzami N, Perfettini JL, Metivier D, Ojcius DM, Jaattela M, and Kroemer G (2003a). Lysosomal membrane permeabilization induces cell death in a mitochondrion-dependent fashion. The Journal of experimental medicine 197, 1323– 1334. 12756268 PMC2193790
- Boya P, and Kroemer G (2008). Lysosomal membrane permeabilization in cell death. Oncogene 27, 6434– 6451. 18955971
- Brunk UT, and Terman A (2002). Lipofuscin: mechanisms of age-related accumulation and influence on cell function. Free radical biology & medicine 33, 611– 619. 12208347
- Butterfield DA, Di Domenico F, Swomley AM, Head E, and Perluigi M (2014a). Redox proteomics analysis to decipher the neurobiology of Alzheimer-like neurodegeneration: overlaps in Down’s syndrome and Alzheimer’s disease brain. The Biochemical journal 463, 177– 189. 25242166 PMC4686233
- Butterfield DA, Gu L, Di Domenico F, and Robinson RA (2014b). Mass spectrometry and redox proteomics: applications in disease. Mass spectrometry reviews 33, 277– 301. 24930952
- Butterfield DA, and Sultana R (2007). Redox proteomics identification of oxidatively modified brain proteins in Alzheimer’s disease and mild cognitive impairment: insights into the progression of this dementing disorder. Journal of Alzheimer’s disease: JAD 12, 61– 72. 17851195
- Carafoli E, and Molinari M (1998). Calpain: a protease in search of a function? Biochemical and biophysical research communications 247, 193– 203. 9642102
- Carmona-Gutierrez D, Hughes AL, Madeo F, and Ruckenstuhl C (2016). The crucial impact of lysosomes in aging and longevity. Ageing research reviews 32, 2– 12. 27125853 PMC5081277
- Chin RM, Fu X, Pai MY, Vergnes L, Hwang H, Deng G, Diep S, Lomenick B, Meli VS, Monsalve GC, (2014). The metabolite alpha-ketoglutarate extends lifespan by inhibiting ATP synthase and TOR. Nature 510, 397– 401. 24828042 PMC4263271
- Colacurcio DJ, and Nixon RA (2016). Disorders of lysosomal acidification-The emerging role of v-ATPase in aging and neurodegenerative disease. Ageing research reviews 32, 75– 88. 27197071 PMC5112157
- Cuervo AM, and Dice JF (2000a). Age-related decline in chaperone-mediated autophagy. The Journal of biological chemistry 275, 31505– 31513. 10806201
- Cuervo AM, and Dice JF (2000b). Regulation of lamp2a levels in the lysosomal membrane. Traffic 1, 570– 583. 11208145
- Cuervo AM, and Dice JF (2000c). Unique properties of lamp2a compared to other lamp2 isoforms. Journal of cell science 113 Pt 24, 4441– 4450. 11082038
- Cuervo AM, and Dice JF (2000d). When lysosomes get old. Experimental gerontology 35, 119– 131. 10767573
- Dechant R, Binda M, Lee SS, Pelet S, Winderickx J, and Peter M (2010). Cytosolic pH is a second messenger for glucose and regulates the PKA pathway through V-ATPase. The EMBO journal 29, 2515– 2526. 20581803 PMC2928683
- DeMartino GN, and Slaughter CA (1999). The proteasome, a novel protease regulated by multiple mechanisms. The Journal of biological chemistry 274, 22123– 22126. 10428771
- Di Domenico F, Perluigi M, Butterfield DA, Cornelius C, and Calabrese V (2010). Oxidative damage in rat brain during aging: interplay between energy and metabolic key target proteins. Neurochemical research 35, 2184– 2192. 20963486
- Diab HI, and Kane PM (2013). Loss of vacuolar H+-ATPase (V-ATPase) activity in yeast generates an iron deprivation signal that is moderated by induction of the peroxiredoxin TSA2. The Journal of biological chemistry 288, 11366– 11377. 23457300 PMC3630902
- Dimmer KS, Fritz S, Fuchs F, Messerschmitt M, Weinbach N, Neupert W, and Westermann B (2002). Genetic basis of mitochondrial function and morphology in Saccharomyces cerevisiae. Molecular biology of the cell 13, 847– 853. 11907266 PMC99603
- Douglas PM, and Dillin A (2010). Protein homeostasis and aging in neurodegeneration. The Journal of cell biology 190, 719– 729. 20819932 PMC2935559
- Dubos A, Castells-Nobau A, Meziane H, Oortveld MA, Houbaert X, Iacono G, Martin C, Mittelhaeuser C, Lalanne V, Kramer JM, (2015). Conditional depletion of intellectual disability and Parkinsonism candidate gene ATP6AP2 in fly and mouse induces cognitive impairment and neurodegeneration. Human molecular genetics 24, 6736– 6755. 26376863 PMC4634377
- Elbaz-Alon Y, Rosenfeld-Gur E, Shinder V, Futerman AH, Geiger T, and Schuldiner M (2014). A dynamic interface between vacuoles and mitochondria in yeast. Developmental cell 30, 95– 102. 25026036
- Fox T, de Miguel E, Mort JS, and Storer AC (1992). Potent slow-binding inhibition of cathepsin B by its propeptide. Biochemistry 31, 12571– 12576. 1472493
- Fujisawa Y, Kato K, and Giulivi C (2009). Nitration of tyrosine residues 368 and 345 in the beta-subunit elicits FoF1-ATPase activity loss. The Biochemical journal 423, 219– 231. 19650768
- Gabande-Rodriguez E, Boya P, Labrador V, Dotti CG, and Ledesma MD (2014). High sphingomyelin levels induce lysosomal damage and autophagy dysfunction in Niemann Pick disease type A. Cell death and differentiation 21, 864– 875. 24488099 PMC4013520
- Gafni A (1997). Structural modifications of proteins during aging. Journal of the American Geriatrics Society 45, 871– 880. 9215342
- Glaser T, Schwarz-Benmeir N, Barnoy S, Barak S, Eshhar Z, and Kosower NS (1994). Calpain (Ca(2+)-dependent thiol protease) in erythrocytes of young and old individuals. Proceedings of the National Academy of Sciences of the United States of America 91, 7879– 7883. 8058728 PMC44507
- Groth-Pedersen L, and Jaattela M (2013). Combating apoptosis and multidrug resistant cancers by targeting lysosomes. Cancer letters 332, 265– 274. 20598437
- Guay J, Falgueyret JP, Ducret A, Percival MD, and Mancini JA (2000). Potency and selectivity of inhibition of cathepsin K, L and S by their respective propeptides. European journal of biochemistry 267, 6311– 6318. 11012686
- Harman D (1972). The biologic clock: the mitochondria? Journal of the American Geriatrics Society 20, 145– 147. 5016631
- Haynes V, Traaseth NJ, Elfering S, Fujisawa Y, and Giulivi C (2010). Nitration of specific tyrosines in FoF1 ATP synthase and activity loss in aging. American journal of physiology Endocrinology and metabolism 298, E978– 987. 20159857 PMC2867368
- Hlavata L, Nachin L, Jezek P, and Nystrom T (2008). Elevated Ras/protein kinase A activity in Saccharomyces cerevisiae reduces proliferation rate and lifespan by two different reactive oxygen species-dependent routes. Aging Cell 7, 148– 157. 18081742
- Honscher C, Mari M, Auffarth K, Bohnert M, Griffith J, Geerts W, van der Laan M, Cabrera M, Reggiori F, and Ungermann C (2014). Cellular metabolism regulates contact sites between vacuoles and mitochondria. Developmental cell 30, 86– 94. 25026035
- Hu JS, Li YB, Wang JW, Sun L, and Zhang GJ (2007). Mechanism of lysophosphatidylchol-ineinduced lysosome destabilization. The Journal of membrane biology 215, 27– 35. 17510762
- Hughes AL, and Gottschling DE (2012). An early age increase in vacuolar pH limits mitochondrial function and lifespan in yeast. Nature 492, 261– 265. 23172144 PMC3521838
- Ivanov A, Pawlikowski J, Manoharan I, van Tuyn J, Nelson DM, Rai TS, Shah PP, Hewitt G, Korolchuk VI, Passos JF, (2013). Lysosome-mediated processing of chromatin in senescence. The Journal of cell biology 202, 129– 143. 23816621 PMC3704985
- Ivy GO, Schottler F, Wenzel J, Baudry M, and Lynch G (1984). Inhibitors of lysosomal enzymes: accumulation of lipofuscin-like dense bodies in the brain. Science 226, 985– 987. 6505679
- Johansson AC, Appelqvist H, Nilsson C, Kagedal K, Roberg K, and Ollinger K (2010). Regulation of apoptosis-associated lysosomal membrane permeabilization. Apoptosis: an international journal on programmed cell death 15, 527– 540. 20077016 PMC2850995
- Jolly RD, Dalefield RR, and Palmer DN (1993). Ceroid, lipofuscin and the ceroid-lipofuscinoses (Batten disease). Journal of inherited metabolic disease 16, 280– 283. 8411981
- Jordans S, Jenko-Kokalj S, Kuhl NM, Tedelind S, Sendt W, Bromme D, Turk D, and Brix K (2009). Monitoring compartment-specific substrate cleavage by cathepsins B, K, L, and S at physiological pH and redox conditions. BMC biochemistry 10, 23. 19772638 PMC2759951
- Jung H, Lee EY, and Lee SI (1999). Age-related changes in ultrastructural features of cathepsin B- and D-containing neurons in rat cerebral cortex. Brain research 844, 43– 54. 10536260
- Kaushik S, and Cuervo AM (2018). The coming of age of chaperone-mediated autophagy. Nature reviews Molecular cell biology 19, 365– 381. 29626215 PMC6399518
- Kay P, Yang YC, Hiscott P, Gray D, Maminishkis A, and Paraoan L (2014). Age-related changes of cystatin C expression and polarized secretion by retinal pigment epithelium: potential age-related macular degeneration links. Investigative ophthalmology & visual science 55, 926– 934. 24458156 PMC11980428
- Kenyon CJ (2010). The genetics of ageing. Nature 464, 504– 512. 20336132
- Keppler D, Walter R, Perez C, and Sierra F (2000). Increased expression of mature cathepsin B in aging rat liver. Cell and tissue research 302, 181– 188. 11131129
- Kirschke H, Wiederanders B, Bromme D, and Rinne A (1989). Cathepsin S from bovine spleen. Purification, distribution, intracellular localization and action on proteins. The Biochemical journal 264, 467– 473. 2690828 PMC1133603
- Korvatska O, Strand NS, Berndt JD, Strovas T, Chen DH, Leverenz JB, Kiianitsa K, Mata IF, Karakoc E, Greenup JL, (2013). Altered splicing of ATP6AP2 causes X-linked parkinsonism with spasticity (XPDS). Human molecular genetics 22, 3259– 3268. 23595882 PMC3723311
- Kurz T, Eaton JW, and Brunk UT (2011). The role of lysosomes in iron metabolism and recycling. The international journal of biochemistry & cell biology 43, 1686– 1697. 21907822
- Lapierre LR, De Magalhaes Filho CD, McQuary PR, Chu CC, Visvikis O, Chang JT, Gelino S, Ong B, Davis AE, Irazoqui JE, (2013). The TFEB orthologue HLH-30 regulates autophagy and modulates longevity in Caenorhabditis elegans. Nature communications 4, 2267. PMC3866206 23925298
- Larner AJ (2013). Presenilin-1 mutations in Alzheimer’s disease: an update on genotype-phenotype relationships. Journal of Alzheimer’s disease: JAD 37, 653– 659. 23948899
- Lee JH, Yu WH, Kumar A, Lee S, Mohan PS, Peterhoff CM, Wolfe DM, Martinez-Vicente M, Massey AC, Sovak G, (2010). Lysosomal proteolysis and autophagy require presenilin 1 and are disrupted by Alzheimer-related PS1 mutations. Cell 141, 1146– 1158. 20541250 PMC3647462
- Majumdar A, Capetillo-Zarate E, Cruz D, Gouras GK, and Maxfield FR (2011). Degradation of Alzheimer’s amyloid fibrils by microglia requires delivery of ClC-7 to lysosomes. Molecular biology of the cell 22, 1664– 1676. 21441306 PMC3093319
- Markaki M, and Tavernarakis N (2013). Metabolic control by target of rapamycin and autophagy during ageing - a mini-review. Gerontology 59, 340– 348. 23594965
- Massey AC, Kaushik S, Sovak G, Kiffin R, and Cuervo AM (2006). Consequences of the selective blockage of chaperone-mediated autophagy. Proceedings of the National Academy of Sciences 103, 5805– 5810. PMC1458654 16585521
- Medina DL, Di Paola S, Peluso I, Armani A, De Stefani D, Venditti R, Montefusco S, Scotto-Rosato A, Prezioso C, Forrester A, (2015). Lysosomal calcium signalling regulates autophagy through calcineurin and TFEB. Nature cell biology 17, 288– 299. 25720963 PMC4801004
- Medina DL, Fraldi A, Bouche V, Annunziata F, Mansueto G, Spampanato C, Puri C, Pignata A, Martina JA, Sardiello M, (2011). Transcriptional activation of lysosomal exocytosis promotes cellular clearance. Developmental cell 21, 421– 430. 21889421 PMC3173716
- Menzies FM, Garcia-Arencibia M, Imarisio S, O’Sullivan NC, Ricketts T, Kent BA, Rao MV, Lam W, Green-Thompson ZW, Nixon RA, (2015). Calpain inhibition mediates autophagy-dependent protection against polyglutamine toxicity. Cell death and differentiation 22, 433– 444. 25257175 PMC4326573
- Molin M, and Demir AB (2014). Linking Peroxiredoxin and Vacuolar-ATPase Functions in Calorie Restriction-Mediated Life Span Extension. International journal of cell biology 2014, 913071. 24639875 PMC3930189
- Nakamura S, and Yoshimori T (2018). Autophagy and Longevity. Molecules and cells 41, 65– 72. 29370695 PMC5792715
- Nakamura Y, Takeda M, Suzuki H, Morita H, Tada K, Hariguchi S, and Nishimura T (1989). Lysosome instability in aged rat brain. Neuroscience letters 97, 215– 220. 2919004
- Nakanishi H (2003). Microglial functions and proteases. Molecular neurobiology 27, 163– 176. 12777686
- Nakanishi H, Tominaga K, Amano T, Hirotsu I, Inoue T, and Yamamoto K (1994a). Age-related changes in activities and localizations of cathepsins D, E, B, and L in the rat brain tissues. Experimental neurology 126, 119– 128. 8157122
- Nakanishi H, Tominaga K, Amano T, Hirotsu I, Inoue T, and Yamamoto K (1994b). Age-Related Changes in Activities and Localizations of Cathepsins D, E, B, and L in the Rat Brain Tissues. Experimental Neurology 126, 119– 128. 8157122
- Nakanishi H, and Wu Z (2009). Microglia-aging: roles of microglial lysosome- and mitochondria-derived reactive oxygen species in brain aging. Behavioural brain research 201, 1– 7. 19428609
- Nixon R (2016). The Lysosome in age-related neurodegenerative diseases In Lysosomes: Biology, Diseases, and Therapeutics, Frederick J.M.W.a.S.L. Maxfield R, ed. (John Wiley & Sons, Inc), pp. 137– 179.
- Nixon RA (2013). The role of autophagy in neurodegenerative disease. Nature medicine 19, 983– 997. 23921753
- Nixon RA, Saito KI, Grynspan F, Griffin WR, Katayama S, Honda T, Mohan PS, Shea TB, and Beermann M (1994). Calcium-activated neutral proteinase (calpain) system in aging and Alzheimer’s disease. Annals of the New York Academy of Sciences 747, 77– 91. 7847693
- Nixon RA, Yang DS, and Lee JH (2008). Neurodegenerative lysosomal disorders: a continuum from development to late age. Autophagy 4, 590– 599. 18497567
- Porta E, Llesuy S, Monserrat AJ, Benavides S, and Travacio M (1995). Changes in cathepsin B and lipofuscin during development and aging in rat brain and heart. Gerontology 41 Suppl 2, 81– 93. 8821323
- Porter K, Nallathambi J, Lin Y, and Liton PB (2013). Lysosomal basification and decreased autophagic flux in oxidatively stressed trabecular meshwork cells: implications for glaucoma pathogenesis. Autophagy 9, 581– 594. 23360789 PMC3627672
- Reeg S, and Grune T (2015). Protein Oxidation in Aging: Does It Play a Role in Aging Progression? Antioxidants & redox signaling 23, 239– 255. 25178482 PMC4507125
- Repnik U, Hafner Cesen M, and Turk B (2014). Lysosomal membrane permeabilization in cell death: concepts and challenges. Mitochondrion 19 Pt A, 49– 57. 24984038
- Rodriguez-Navarro JA, Kaushik S, Koga H, Dall’Armi C, Shui G, Wenk MR, Di Paolo G, and Cuervo AM (2012). Inhibitory effect of dietary lipids on chaperone-mediated autophagy. Proceedings of the National Academy of Sciences of the United States of America 109, E705– 714. 22331875 PMC3311383
- Rubinsztein DC, Marino G, and Kroemer G (2011). Autophagy and aging. Cell 146, 682– 695. 21884931
- Ruckenstuhl C, Netzberger C, Entfellner I, Carmona-Gutierrez D, Kickenweiz T, Stekovic S, Gleixner C, Schmid C, Klug L, Sorgo AG, (2014). Lifespan extension by methionine restriction requires autophagy-dependent vacuolar acidification. PLoS genetics 10, e1004347. 24785424 PMC4006742
- Saito K, Elce JS, Hamos JE, and Nixon RA (1993). Widespread activation of calcium-activated neutral proteinase (calpain) in the brain in Alzheimer disease: a potential molecular basis for neuronal degeneration. Proc Natl Acad Sci U S A 90, 2628– 2632. 8464868 PMC46148
- Sardiello M, Palmieri M, di Ronza A, Medina DL, Valenza M, Gennarino VA, Di Malta C, Donaudy F, Embrione V, Polishchuk RS, (2009). A gene network regulating lysosomal biogenesis and function. Science 325, 473– 477. 19556463
- Schleit J, Johnson SC, Bennett CF, Simko M, Trongtham N, Castanza A, Hsieh EJ, Moller RM, Wasko BM, Delaney JR, (2013). Molecular mechanisms underlying genotype-dependent responses to dietary restriction. Aging Cell 12, 1050– 1061. 23837470 PMC3838465
- Seehafer SS, and Pearce DA (2006). You say lipofuscin, we say ceroid: defining autofluorescent storage material. Neurobiology of aging 27, 576– 588. 16455164
- Shen D, Wang X, Li X, Zhang X, Yao Z, Dibble S, Dong XP, Yu T, Lieberman AP, Showalter HD, (2012). Lipid storage disorders block lysosomal trafficking by inhibiting a TRP channel and lysosomal calcium release. Nature communications 3, 731. PMC3347486 22415822
- Shibatani T, and Ward WF (1996). Effect of age and food restriction on alkaline protease activity in rat liver. The journals of gerontology Series A, Biological sciences and medical sciences 51, B175– 178. 8612102
- Sinclair DA, and Guarente L (1997). Extrachromosomal rDNA circles--a cause of aging in yeast. Cell 91, 1033– 1042. 9428525
- Stehling O, and Lill R (2013). The role of mitochondria in cellular iron-sulfur protein biogenesis: mechanisms, connected processes, and diseases. Cold Spring Harbor perspectives in biology 5, a011312. 23906713 PMC3721283
- Stephan J, Franke J, and Ehrenhofer-Murray AE (2013). Chemical genetic screen in fission yeast reveals roles for vacuolar acidification, mitochondrial fission, and cellular GMP levels in lifespan extension. Aging Cell 12, 574– 583. 23521895
- Stoka V, Turk V, and Turk B (2007). Lysosomal cysteine cathepsins: signaling pathways in apoptosis. Biological chemistry 388, 555– 560. 17552902
- Stoka V, Turk V, and Turk B (2016). Lysosomal cathepsins and their regulation in aging and neurodegeneration. Ageing research reviews 32, 22– 37. 27125852
- Strehler BL, Mark DD, and Mildvan AS (1959). GEE MV: Rate and magnitude of age pigment accumulation in the human myocardium. Journal of gerontology 14, 430– 439. 13835175
- Sukharev SA, Pleshakova OV, Moshnikova AB, Sadovnikov VB, and Gaziev AI (1997). Age- and radiation-dependent changes in carbonyl content, susceptibility to proteolysis, and antigenicity of soluble rat liver proteins. Comparative biochemistry and physiology Part B, Biochemistry & molecular biology 116, 333– 338. 9114493
- Terman A, and Brunk UT (1998). Ceroid/lipofuscin formation in cultured human fibroblasts: the role of oxidative stress and lysosomal proteolysis. Mechanisms of ageing and development 104, 277– 291. 9818731
- Terman A, and Brunk UT (2004). Lipofuscin. The international journal of biochemistry & cell biology 36, 1400– 1404. 15147719
- Terman A, Dalen H, Eaton JW, Neuzil J, and Brunk UT (2003). Mitochondrial recycling and aging of cardiac myocytes: the role of autophagocytosis. Experimental gerontology 38, 863– 876. 12915208
- Terman A, Kurz T, Gustafsson B, and Brunk UT (2008). The involvement of lysosomes in myocardial aging and disease. Current cardiology reviews 4, 107– 115. 19936285 PMC2779350
- Turk B, Bieth JG, Bjork I, Dolenc I, Turk D, Cimerman N, Kos J, Colic A, Stoka V, and Turk V (1995). Regulation of the activity of lysosomal cysteine proteinases by pH-induced inactivation and/or endogenous protein inhibitors, cystatins. Biological chemistry Hoppe-Seyler 376, 225– 230. 7626231
- Turk B, Dolenc I, Lenarcic B, Krizaj I, Turk V, Bieth JG, and Bjork I (1999). Acidic pH as a physiological regulator of human cathepsin L activity. European journal of biochemistry 259, 926– 932. 10092883
- Turk B, Dolenc I, Turk V, and Bieth JG (1993). Kinetics of the pH-induced inactivation of human cathepsin L. Biochemistry 32, 375– 380. 7678196
- Turk B, Dolenc I, Zerovnik E, Turk D, Gubensek F, and Turk V (1994). Human cathepsin B is a metastable enzyme stabilized by specific ionic interactions associated with the active site. Biochemistry 33, 14800– 14806. 7993907
- Turk B, and Turk V (2009). Lysosomes as “suicide bags” in cell death: myth or reality? The Journal of biological chemistry 284, 21783– 21787. 19473965 PMC2755904
- Vilchez D, Simic MS, and Dillin A (2014). Proteostasis and aging of stem cells. Trends in cell biology 24, 161– 170. 24094931
- Villalpando Rodriguez GE, and Torriglia A (2013). Calpain 1 induce lysosomal permeabilization by cleavage of lysosomal associated membrane protein 2. Biochimica et biophysica acta 1833, 2244– 2253. 23747342
- von Bernhardi R, Eugenin-von Bernhardi L, and Eugenin J (2015). Microglial cell dysregulation in brain aging and neurodegeneration. Frontiers in aging neuroscience 7, 124. 26257642 PMC4507468
- Wang S, Tsun ZY, Wolfson RL, Shen K, Wyant GA, Plovanich ME, Yuan ED, Jones TD, Chantranupong L, Comb W, (2015). Metabolism. Lysosomal amino acid transporter SLC38A9 signals arginine sufficiency to mTORC1. Science 347, 188– 194. 25567906 PMC4295826
- Wang Y, and Floor E (1998). Hydrogen peroxide inhibits the vacuolar H+-ATPase in brain synaptic vesicles at micromolar concentrations. Journal of neurochemistry 70, 646– 652. 9453558
- Ward ME, Chen R, Huang HY, Ludwig C, Telpoukhovskaia M, Taubes A, Boudin H, Minami SS, Reichert M, Albrecht P, (2017). Individuals with progranulin haploinsufficiency exhibit features of neuronal ceroid lipofuscinosis. Science translational medicine 9. PMC5526610 28404863
- Wendt W, Zhu XR, Lubbert H, and Stichel CC (2007). Differential expression of cathepsin X in aging and pathological central nervous system of mice. Experimental neurology 204, 525– 540. 17306794
- Williamson WR, and Hiesinger PR (2010). On the role of v-ATPase V0a1-dependent degradation in Alzheimer disease. Communicative & integrative biology 3, 604– 607. 21331254 PMC3038078
- Wolfe DM, Lee JH, Kumar A, Lee S, Orenstein SJ, and Nixon RA (2013). Autophagy failure in Alzheimer’s disease and the role of defective lysosomal acidification. The European journal of neuroscience 37, 1949– 1961. 23773064 PMC3694736
- Wright WE, Brasiskyte D, Piatyszek MA, and Shay JW (1996). Experimental elongation of telomeres extends the lifespan of immortal x normal cell hybrids. The EMBO journal 15, 1734– 1741. 8612598 PMC450086
- Yamashima T (2016). Can ‘calpain-cathepsin hypothesis’ explain Alzheimer neuronal death? Ageing research reviews 32, 169– 179. 27306474
- Yousefi S, Perozzo R, Schmid I, Ziemiecki A, Schaffner T, Scapozza L, Brunner T, and Simon HU (2006). Calpain-mediated cleavage of Atg5 switches autophagy to apoptosis. Nature cell biology 8, 1124– 1132. 16998475
- Zoncu R, Efeyan A, and Sabatini DM (2011b). mTOR: from growth signal integration to cancer, diabetes and ageing. Nature reviews Molecular cell biology 12, 21– 35. 21157483 PMC3390257
- Authors
- Nixon, R. A.
- Affiliations
- Nathan Kline Institute for Psychiatric Research (US)
- Corresponding author
- Nixon, Ralph A.
- ORCID
- Nixon, Ralph A.
- Venue
- Biochimica et Biophysica Acta (BBA) - Proteins and Proteomics
- Publisher
- Elsevier BV
- Published
- 2020-09
- Volume
- 1868
- Issue
- 9
- Pages
- 140443
- ISSN
- 1570-9639 (ISSN-L)
- PMC
- PMC7388076
- OpenAlex
- W3024127790
- Cited by
- 149
- References
- 139
- Citations by year
- 2026: 31 · 2025: 24 · 2024: 30 · 2023: 21 · 2022: 20 · 2021: 18 · 2020: 4 · 2019: 1
- FWCI
- 2.30
- Type
- journal article
- Language
- en
- Open access
- green
- www.ncbi.nlm.nih.gov
- Locations
- Biochimica et Biophysica Acta (BBA) - Proteins and Proteomics (publishedVersion)
- PubMed (publishedVersion)
- PubMed Central (acceptedVersion)
- Funders
- National Institutes of Health
- Topics
- Health Sciences › Medicine › Epidemiology › Autophagy in Disease and Therapy
- Health Sciences › Medicine › Physiology › Lysosomal Storage Disorders Research
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Aging › Genetics, Aging, and Longevity in Model Organisms
- Keywords
- lysosomes, cellular aging, lysosomal acidification, autophagy, lysosomal storage disease, Alzheimer's disease, Parkinson's disease, lysosomal pH, lifespan extension, neuronal function, protein clearance
- MeSH terms
- Aging, Alzheimer Disease, Animals, Autophagy, Humans, Hydrogen-Ion Concentration, Hydrolases, Lysosomes, Parkinson Disease, Oxidative Stress, Neurodegenerative Diseases, Proteolysis
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Registry, retraction, Cites and statistics results are computed, not judged, with one exception: a printed reference that no index lists is read once by a model before it counts as a citation error. Claims are extracted by a model and kept only when their quote appears verbatim in the text; each cited source is then checked, with a model’s help, for whether it says what the claim relies on. Those verdicts can be wrong — read the claim’s quote and the cited source before relying on one.
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