Cited by 149Autophagy in Disease and TherapyLysosomal Storage Disorders ResearchGenetics, Aging, and Longevity in Model Organisms

The aging lysosome: An essential catalyst for late-onset neurodegenerative diseases

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Nixon, Ralph A.·2020·Biochimica et Biophysica Acta (BBA) - Proteins and Proteomics

Abstract

Lysosomes figure prominently in theories of aging as the proteolytic system most responsible for eliminating growing burdens of damaged proteins and organelles in aging neurons and other long lived cells. Newer evidence shows that diverse experimental measures known to extend lifespan in invertebrate aging models share the property of boosting lysosomal clearance of substrates through the autophagy pathway. Maintaining an optimal level of lysosome acidification is particularly crucial for these anti-aging effects. The exceptional dependence of neurons on fully functional lysosomes is reflected by the neurological phenotypes that develop in congenital lysosomal storage disorders, which commonly present as severe neurodevelopmental or neurodegenerative conditions even though the lysosomal deficit maybe systemic. Similar connections are now being appreciated between primary lysosomal deficit and the risk for late age-onset neurodegenerative disorders. In diseases such as Alzheimer's and Parkinson's, as in aging alone, primary lysosome dysfunction due to acidification impairment is emerging as a frequent theme, supported by the growing list of familial neurodegenerative disorders that involve primary vATPase dysfunction. The additional cellular roles played by intraluminal pH in sensing nutrient and stress and modulating cellular signaling have further expanded the possible ways that lysosomal pH dysregulation in aging and disease can disrupt neuronal function. Here, we consider the impact of cellular aging on lysosomes and how the changes during aging may create the tipping point for disease emergence in major late-age onset neurodegenerative disorders.

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  • NCL-associated genes typically encode proteins involved in proteolysis, lipid catabolism, or have unidentified lysosomal roles.

    “The genes associated with NCLs are typically in proteins involved in proteolysis (such as the cathepsin proteases), lipid catabolism, or have unidentified roles in the lysosome (e.g., MSFD8).118”

    From The lysosome and proteostatic stress at the intersection of pediatric neurological disorders and adult neurodegenerative diseases (2025) · cites this paper as [118]

    The Introduction (“Aging lysosomes – a critical precondition for late-age onset neurodegenerative diseases”; page unavailable) links progranulin mutations to childhood NCL, but does not classify NCL-associated genes by protein function. Searches for MFSD8, proteolysis, lipid catabolism, and NCL-associated genes found no passage in our copy stating the claimed categories. (LLM, conf=0.73)

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References 139 · Cited by 149

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  1. Afshari C, and Barret J (1996). Molecular genetics of in vitro cellular senescence In Cellular Aging and Cell Death, Holbrrok N, Martin G, and Lockshin R, eds. (New York: Wiley-Liss, Inc.), pp. 109– 121.
  2. Almeida PC, Nantes IL, Chagas JR, Rizzi CC, Faljoni-Alario A, Carmona E, Juliano L, Nader HB, and Tersariol IL (2001). Cathepsin B activity regulation. Heparin-like glycosaminogylcans protect human cathepsin B from alkaline pH-induced inactivation. The Journal of biological chemistry 276, 944– 951. 11016923
  3. Amano T, Nakanishi H, Kondo T, Tanaka T, Oka M, and Yamamoto K (1995). Age-related changes in cellular localization and enzymatic activities of cathepsins B, L and D in the rat trigeminal ganglion neuron. Mechanisms of ageing and development 83, 133– 141. 8583832
  4. Barone E (2016). Editorial: Oxidative Stress and Alzheimer Disease: Where Do We Stand? Current Alzheimer research 13, 108– 111. 26750609
  5. Bednarski E, and Lynch G (1996). Cytosolic proteolysis of tau by cathepsin D in hippocampus following suppression of cathepsins B and L. Journal of neurochemistry 67, 1846– 1855. 8863489
  6. Bednarski E, Ribak CE, and Lynch G (1997). Suppression of cathepsins B and L causes a proliferation of lysosomes and the formation of meganeurites in hippocampus. JNeurosci 17, 4006– 4021. 9151717 PMC6573562
  7. Bergmann M, Schutt F, Holz FG, and Kopitz J (2004). Inhibition of the ATP-driven proton pump in RPE lysosomes by the major lipofuscin fluorophore A2-E may contribute to the pathogenesis of age-related macular degeneration. FASEB journal: official publication of the Federation of American Societies for Experimental Biology 18, 562– 564. 14715704
  8. Blom T, Li S, Dichlberger A, Back N, Kim YA, Loizides-Mangold U, Riezman H, Bittman R, and Ikonen E (2015). LAPTM4B facilitates late endosomal ceramide export to control cell death pathways. Nature chemical biology 11, 799– 806. 26280656
  9. Boland B, Yu WH, Corti O, Mollereau B, Henriques A, Bezard E, Pastores GM, Rubinsztein DC, Nixon RA, Duchen MR, (2018). Promoting the clearance of neurotoxic proteins in neurodegenerative disorders of ageing. Nature reviews Drug discovery 17, 660– 688. 30116051 PMC6456907
  10. Bond S, and Forgac M (2008). The Ras/cAMP/protein kinase A pathway regulates glucose-dependent assembly of the vacuolar (H+)-ATPase in yeast. The Journal of biological chemistry 283, 36513– 36521. 18936098 PMC2605986
  11. Boya P, Andreau K, Poncet D, Zamzami N, Perfettini JL, Metivier D, Ojcius DM, Jaattela M, and Kroemer G (2003a). Lysosomal membrane permeabilization induces cell death in a mitochondrion-dependent fashion. The Journal of experimental medicine 197, 1323– 1334. 12756268 PMC2193790
  12. Boya P, and Kroemer G (2008). Lysosomal membrane permeabilization in cell death. Oncogene 27, 6434– 6451. 18955971
  13. Brunk UT, and Terman A (2002). Lipofuscin: mechanisms of age-related accumulation and influence on cell function. Free radical biology & medicine 33, 611– 619. 12208347
  14. Butterfield DA, Di Domenico F, Swomley AM, Head E, and Perluigi M (2014a). Redox proteomics analysis to decipher the neurobiology of Alzheimer-like neurodegeneration: overlaps in Down’s syndrome and Alzheimer’s disease brain. The Biochemical journal 463, 177– 189. 25242166 PMC4686233
  15. Butterfield DA, Gu L, Di Domenico F, and Robinson RA (2014b). Mass spectrometry and redox proteomics: applications in disease. Mass spectrometry reviews 33, 277– 301. 24930952
  16. Butterfield DA, and Sultana R (2007). Redox proteomics identification of oxidatively modified brain proteins in Alzheimer’s disease and mild cognitive impairment: insights into the progression of this dementing disorder. Journal of Alzheimer’s disease: JAD 12, 61– 72. 17851195
  17. Carafoli E, and Molinari M (1998). Calpain: a protease in search of a function? Biochemical and biophysical research communications 247, 193– 203. 9642102
  18. Carmona-Gutierrez D, Hughes AL, Madeo F, and Ruckenstuhl C (2016). The crucial impact of lysosomes in aging and longevity. Ageing research reviews 32, 2– 12. 27125853 PMC5081277
  19. Chin RM, Fu X, Pai MY, Vergnes L, Hwang H, Deng G, Diep S, Lomenick B, Meli VS, Monsalve GC, (2014). The metabolite alpha-ketoglutarate extends lifespan by inhibiting ATP synthase and TOR. Nature 510, 397– 401. 24828042 PMC4263271
  20. Colacurcio DJ, and Nixon RA (2016). Disorders of lysosomal acidification-The emerging role of v-ATPase in aging and neurodegenerative disease. Ageing research reviews 32, 75– 88. 27197071 PMC5112157
  21. Cuervo AM, and Dice JF (2000a). Age-related decline in chaperone-mediated autophagy. The Journal of biological chemistry 275, 31505– 31513. 10806201
  22. Cuervo AM, and Dice JF (2000b). Regulation of lamp2a levels in the lysosomal membrane. Traffic 1, 570– 583. 11208145
  23. Cuervo AM, and Dice JF (2000c). Unique properties of lamp2a compared to other lamp2 isoforms. Journal of cell science 113 Pt 24, 4441– 4450. 11082038
  24. Cuervo AM, and Dice JF (2000d). When lysosomes get old. Experimental gerontology 35, 119– 131. 10767573
  25. Dechant R, Binda M, Lee SS, Pelet S, Winderickx J, and Peter M (2010). Cytosolic pH is a second messenger for glucose and regulates the PKA pathway through V-ATPase. The EMBO journal 29, 2515– 2526. 20581803 PMC2928683
  26. DeMartino GN, and Slaughter CA (1999). The proteasome, a novel protease regulated by multiple mechanisms. The Journal of biological chemistry 274, 22123– 22126. 10428771
  27. Di Domenico F, Perluigi M, Butterfield DA, Cornelius C, and Calabrese V (2010). Oxidative damage in rat brain during aging: interplay between energy and metabolic key target proteins. Neurochemical research 35, 2184– 2192. 20963486
  28. Diab HI, and Kane PM (2013). Loss of vacuolar H+-ATPase (V-ATPase) activity in yeast generates an iron deprivation signal that is moderated by induction of the peroxiredoxin TSA2. The Journal of biological chemistry 288, 11366– 11377. 23457300 PMC3630902
  29. Dimmer KS, Fritz S, Fuchs F, Messerschmitt M, Weinbach N, Neupert W, and Westermann B (2002). Genetic basis of mitochondrial function and morphology in Saccharomyces cerevisiae. Molecular biology of the cell 13, 847– 853. 11907266 PMC99603
  30. Douglas PM, and Dillin A (2010). Protein homeostasis and aging in neurodegeneration. The Journal of cell biology 190, 719– 729. 20819932 PMC2935559
  31. Dubos A, Castells-Nobau A, Meziane H, Oortveld MA, Houbaert X, Iacono G, Martin C, Mittelhaeuser C, Lalanne V, Kramer JM, (2015). Conditional depletion of intellectual disability and Parkinsonism candidate gene ATP6AP2 in fly and mouse induces cognitive impairment and neurodegeneration. Human molecular genetics 24, 6736– 6755. 26376863 PMC4634377
  32. Elbaz-Alon Y, Rosenfeld-Gur E, Shinder V, Futerman AH, Geiger T, and Schuldiner M (2014). A dynamic interface between vacuoles and mitochondria in yeast. Developmental cell 30, 95– 102. 25026036
  33. Fox T, de Miguel E, Mort JS, and Storer AC (1992). Potent slow-binding inhibition of cathepsin B by its propeptide. Biochemistry 31, 12571– 12576. 1472493
  34. Fujisawa Y, Kato K, and Giulivi C (2009). Nitration of tyrosine residues 368 and 345 in the beta-subunit elicits FoF1-ATPase activity loss. The Biochemical journal 423, 219– 231. 19650768
  35. Gabande-Rodriguez E, Boya P, Labrador V, Dotti CG, and Ledesma MD (2014). High sphingomyelin levels induce lysosomal damage and autophagy dysfunction in Niemann Pick disease type A. Cell death and differentiation 21, 864– 875. 24488099 PMC4013520
  36. Gafni A (1997). Structural modifications of proteins during aging. Journal of the American Geriatrics Society 45, 871– 880. 9215342
  37. Glaser T, Schwarz-Benmeir N, Barnoy S, Barak S, Eshhar Z, and Kosower NS (1994). Calpain (Ca(2+)-dependent thiol protease) in erythrocytes of young and old individuals. Proceedings of the National Academy of Sciences of the United States of America 91, 7879– 7883. 8058728 PMC44507
  38. Groth-Pedersen L, and Jaattela M (2013). Combating apoptosis and multidrug resistant cancers by targeting lysosomes. Cancer letters 332, 265– 274. 20598437
  39. Guay J, Falgueyret JP, Ducret A, Percival MD, and Mancini JA (2000). Potency and selectivity of inhibition of cathepsin K, L and S by their respective propeptides. European journal of biochemistry 267, 6311– 6318. 11012686
  40. Harman D (1972). The biologic clock: the mitochondria? Journal of the American Geriatrics Society 20, 145– 147. 5016631
  41. Haynes V, Traaseth NJ, Elfering S, Fujisawa Y, and Giulivi C (2010). Nitration of specific tyrosines in FoF1 ATP synthase and activity loss in aging. American journal of physiology Endocrinology and metabolism 298, E978– 987. 20159857 PMC2867368
  42. Hlavata L, Nachin L, Jezek P, and Nystrom T (2008). Elevated Ras/protein kinase A activity in Saccharomyces cerevisiae reduces proliferation rate and lifespan by two different reactive oxygen species-dependent routes. Aging Cell 7, 148– 157. 18081742
  43. Honscher C, Mari M, Auffarth K, Bohnert M, Griffith J, Geerts W, van der Laan M, Cabrera M, Reggiori F, and Ungermann C (2014). Cellular metabolism regulates contact sites between vacuoles and mitochondria. Developmental cell 30, 86– 94. 25026035
  44. Hu JS, Li YB, Wang JW, Sun L, and Zhang GJ (2007). Mechanism of lysophosphatidylchol-ineinduced lysosome destabilization. The Journal of membrane biology 215, 27– 35. 17510762
  45. Hughes AL, and Gottschling DE (2012). An early age increase in vacuolar pH limits mitochondrial function and lifespan in yeast. Nature 492, 261– 265. 23172144 PMC3521838
  46. Ivanov A, Pawlikowski J, Manoharan I, van Tuyn J, Nelson DM, Rai TS, Shah PP, Hewitt G, Korolchuk VI, Passos JF, (2013). Lysosome-mediated processing of chromatin in senescence. The Journal of cell biology 202, 129– 143. 23816621 PMC3704985
  47. Ivy GO, Schottler F, Wenzel J, Baudry M, and Lynch G (1984). Inhibitors of lysosomal enzymes: accumulation of lipofuscin-like dense bodies in the brain. Science 226, 985– 987. 6505679
  48. Johansson AC, Appelqvist H, Nilsson C, Kagedal K, Roberg K, and Ollinger K (2010). Regulation of apoptosis-associated lysosomal membrane permeabilization. Apoptosis: an international journal on programmed cell death 15, 527– 540. 20077016 PMC2850995
  49. Jolly RD, Dalefield RR, and Palmer DN (1993). Ceroid, lipofuscin and the ceroid-lipofuscinoses (Batten disease). Journal of inherited metabolic disease 16, 280– 283. 8411981
  50. Jordans S, Jenko-Kokalj S, Kuhl NM, Tedelind S, Sendt W, Bromme D, Turk D, and Brix K (2009). Monitoring compartment-specific substrate cleavage by cathepsins B, K, L, and S at physiological pH and redox conditions. BMC biochemistry 10, 23. 19772638 PMC2759951
  51. Jung H, Lee EY, and Lee SI (1999). Age-related changes in ultrastructural features of cathepsin B- and D-containing neurons in rat cerebral cortex. Brain research 844, 43– 54. 10536260
  52. Kaushik S, and Cuervo AM (2018). The coming of age of chaperone-mediated autophagy. Nature reviews Molecular cell biology 19, 365– 381. 29626215 PMC6399518
  53. Kay P, Yang YC, Hiscott P, Gray D, Maminishkis A, and Paraoan L (2014). Age-related changes of cystatin C expression and polarized secretion by retinal pigment epithelium: potential age-related macular degeneration links. Investigative ophthalmology & visual science 55, 926– 934. 24458156 PMC11980428
  54. Kenyon CJ (2010). The genetics of ageing. Nature 464, 504– 512. 20336132
  55. Keppler D, Walter R, Perez C, and Sierra F (2000). Increased expression of mature cathepsin B in aging rat liver. Cell and tissue research 302, 181– 188. 11131129
  56. Kirschke H, Wiederanders B, Bromme D, and Rinne A (1989). Cathepsin S from bovine spleen. Purification, distribution, intracellular localization and action on proteins. The Biochemical journal 264, 467– 473. 2690828 PMC1133603
  57. Korvatska O, Strand NS, Berndt JD, Strovas T, Chen DH, Leverenz JB, Kiianitsa K, Mata IF, Karakoc E, Greenup JL, (2013). Altered splicing of ATP6AP2 causes X-linked parkinsonism with spasticity (XPDS). Human molecular genetics 22, 3259– 3268. 23595882 PMC3723311
  58. Kurz T, Eaton JW, and Brunk UT (2011). The role of lysosomes in iron metabolism and recycling. The international journal of biochemistry & cell biology 43, 1686– 1697. 21907822
  59. Lapierre LR, De Magalhaes Filho CD, McQuary PR, Chu CC, Visvikis O, Chang JT, Gelino S, Ong B, Davis AE, Irazoqui JE, (2013). The TFEB orthologue HLH-30 regulates autophagy and modulates longevity in Caenorhabditis elegans. Nature communications 4, 2267. PMC3866206 23925298
  60. Larner AJ (2013). Presenilin-1 mutations in Alzheimer’s disease: an update on genotype-phenotype relationships. Journal of Alzheimer’s disease: JAD 37, 653– 659. 23948899
  61. Lee JH, Yu WH, Kumar A, Lee S, Mohan PS, Peterhoff CM, Wolfe DM, Martinez-Vicente M, Massey AC, Sovak G, (2010). Lysosomal proteolysis and autophagy require presenilin 1 and are disrupted by Alzheimer-related PS1 mutations. Cell 141, 1146– 1158. 20541250 PMC3647462
  62. Majumdar A, Capetillo-Zarate E, Cruz D, Gouras GK, and Maxfield FR (2011). Degradation of Alzheimer’s amyloid fibrils by microglia requires delivery of ClC-7 to lysosomes. Molecular biology of the cell 22, 1664– 1676. 21441306 PMC3093319
  63. Markaki M, and Tavernarakis N (2013). Metabolic control by target of rapamycin and autophagy during ageing - a mini-review. Gerontology 59, 340– 348. 23594965
  64. Massey AC, Kaushik S, Sovak G, Kiffin R, and Cuervo AM (2006). Consequences of the selective blockage of chaperone-mediated autophagy. Proceedings of the National Academy of Sciences 103, 5805– 5810. PMC1458654 16585521
  65. Medina DL, Di Paola S, Peluso I, Armani A, De Stefani D, Venditti R, Montefusco S, Scotto-Rosato A, Prezioso C, Forrester A, (2015). Lysosomal calcium signalling regulates autophagy through calcineurin and TFEB. Nature cell biology 17, 288– 299. 25720963 PMC4801004
  66. Medina DL, Fraldi A, Bouche V, Annunziata F, Mansueto G, Spampanato C, Puri C, Pignata A, Martina JA, Sardiello M, (2011). Transcriptional activation of lysosomal exocytosis promotes cellular clearance. Developmental cell 21, 421– 430. 21889421 PMC3173716
  67. Menzies FM, Garcia-Arencibia M, Imarisio S, O’Sullivan NC, Ricketts T, Kent BA, Rao MV, Lam W, Green-Thompson ZW, Nixon RA, (2015). Calpain inhibition mediates autophagy-dependent protection against polyglutamine toxicity. Cell death and differentiation 22, 433– 444. 25257175 PMC4326573
  68. Molin M, and Demir AB (2014). Linking Peroxiredoxin and Vacuolar-ATPase Functions in Calorie Restriction-Mediated Life Span Extension. International journal of cell biology 2014, 913071. 24639875 PMC3930189
  69. Nakamura S, and Yoshimori T (2018). Autophagy and Longevity. Molecules and cells 41, 65– 72. 29370695 PMC5792715
  70. Nakamura Y, Takeda M, Suzuki H, Morita H, Tada K, Hariguchi S, and Nishimura T (1989). Lysosome instability in aged rat brain. Neuroscience letters 97, 215– 220. 2919004
  71. Nakanishi H (2003). Microglial functions and proteases. Molecular neurobiology 27, 163– 176. 12777686
  72. Nakanishi H, Tominaga K, Amano T, Hirotsu I, Inoue T, and Yamamoto K (1994a). Age-related changes in activities and localizations of cathepsins D, E, B, and L in the rat brain tissues. Experimental neurology 126, 119– 128. 8157122
  73. Nakanishi H, Tominaga K, Amano T, Hirotsu I, Inoue T, and Yamamoto K (1994b). Age-Related Changes in Activities and Localizations of Cathepsins D, E, B, and L in the Rat Brain Tissues. Experimental Neurology 126, 119– 128. 8157122
  74. Nakanishi H, and Wu Z (2009). Microglia-aging: roles of microglial lysosome- and mitochondria-derived reactive oxygen species in brain aging. Behavioural brain research 201, 1– 7. 19428609
  75. Nixon R (2016). The Lysosome in age-related neurodegenerative diseases In Lysosomes: Biology, Diseases, and Therapeutics, Frederick J.M.W.a.S.L. Maxfield R, ed. (John Wiley & Sons, Inc), pp. 137– 179.
  76. Nixon RA (2013). The role of autophagy in neurodegenerative disease. Nature medicine 19, 983– 997. 23921753
  77. Nixon RA, Saito KI, Grynspan F, Griffin WR, Katayama S, Honda T, Mohan PS, Shea TB, and Beermann M (1994). Calcium-activated neutral proteinase (calpain) system in aging and Alzheimer’s disease. Annals of the New York Academy of Sciences 747, 77– 91. 7847693
  78. Nixon RA, Yang DS, and Lee JH (2008). Neurodegenerative lysosomal disorders: a continuum from development to late age. Autophagy 4, 590– 599. 18497567
  79. Porta E, Llesuy S, Monserrat AJ, Benavides S, and Travacio M (1995). Changes in cathepsin B and lipofuscin during development and aging in rat brain and heart. Gerontology 41 Suppl 2, 81– 93. 8821323
  80. Porter K, Nallathambi J, Lin Y, and Liton PB (2013). Lysosomal basification and decreased autophagic flux in oxidatively stressed trabecular meshwork cells: implications for glaucoma pathogenesis. Autophagy 9, 581– 594. 23360789 PMC3627672
  81. Reeg S, and Grune T (2015). Protein Oxidation in Aging: Does It Play a Role in Aging Progression? Antioxidants & redox signaling 23, 239– 255. 25178482 PMC4507125
  82. Repnik U, Hafner Cesen M, and Turk B (2014). Lysosomal membrane permeabilization in cell death: concepts and challenges. Mitochondrion 19 Pt A, 49– 57. 24984038
  83. Rodriguez-Navarro JA, Kaushik S, Koga H, Dall’Armi C, Shui G, Wenk MR, Di Paolo G, and Cuervo AM (2012). Inhibitory effect of dietary lipids on chaperone-mediated autophagy. Proceedings of the National Academy of Sciences of the United States of America 109, E705– 714. 22331875 PMC3311383
  84. Rubinsztein DC, Marino G, and Kroemer G (2011). Autophagy and aging. Cell 146, 682– 695. 21884931
  85. Ruckenstuhl C, Netzberger C, Entfellner I, Carmona-Gutierrez D, Kickenweiz T, Stekovic S, Gleixner C, Schmid C, Klug L, Sorgo AG, (2014). Lifespan extension by methionine restriction requires autophagy-dependent vacuolar acidification. PLoS genetics 10, e1004347. 24785424 PMC4006742
  86. Saito K, Elce JS, Hamos JE, and Nixon RA (1993). Widespread activation of calcium-activated neutral proteinase (calpain) in the brain in Alzheimer disease: a potential molecular basis for neuronal degeneration. Proc Natl Acad Sci U S A 90, 2628– 2632. 8464868 PMC46148
  87. Sardiello M, Palmieri M, di Ronza A, Medina DL, Valenza M, Gennarino VA, Di Malta C, Donaudy F, Embrione V, Polishchuk RS, (2009). A gene network regulating lysosomal biogenesis and function. Science 325, 473– 477. 19556463
  88. Schleit J, Johnson SC, Bennett CF, Simko M, Trongtham N, Castanza A, Hsieh EJ, Moller RM, Wasko BM, Delaney JR, (2013). Molecular mechanisms underlying genotype-dependent responses to dietary restriction. Aging Cell 12, 1050– 1061. 23837470 PMC3838465
  89. Seehafer SS, and Pearce DA (2006). You say lipofuscin, we say ceroid: defining autofluorescent storage material. Neurobiology of aging 27, 576– 588. 16455164
  90. Shen D, Wang X, Li X, Zhang X, Yao Z, Dibble S, Dong XP, Yu T, Lieberman AP, Showalter HD, (2012). Lipid storage disorders block lysosomal trafficking by inhibiting a TRP channel and lysosomal calcium release. Nature communications 3, 731. PMC3347486 22415822
  91. Shibatani T, and Ward WF (1996). Effect of age and food restriction on alkaline protease activity in rat liver. The journals of gerontology Series A, Biological sciences and medical sciences 51, B175– 178. 8612102
  92. Sinclair DA, and Guarente L (1997). Extrachromosomal rDNA circles--a cause of aging in yeast. Cell 91, 1033– 1042. 9428525
  93. Stehling O, and Lill R (2013). The role of mitochondria in cellular iron-sulfur protein biogenesis: mechanisms, connected processes, and diseases. Cold Spring Harbor perspectives in biology 5, a011312. 23906713 PMC3721283
  94. Stephan J, Franke J, and Ehrenhofer-Murray AE (2013). Chemical genetic screen in fission yeast reveals roles for vacuolar acidification, mitochondrial fission, and cellular GMP levels in lifespan extension. Aging Cell 12, 574– 583. 23521895
  95. Stoka V, Turk V, and Turk B (2007). Lysosomal cysteine cathepsins: signaling pathways in apoptosis. Biological chemistry 388, 555– 560. 17552902
  96. Stoka V, Turk V, and Turk B (2016). Lysosomal cathepsins and their regulation in aging and neurodegeneration. Ageing research reviews 32, 22– 37. 27125852
  97. Strehler BL, Mark DD, and Mildvan AS (1959). GEE MV: Rate and magnitude of age pigment accumulation in the human myocardium. Journal of gerontology 14, 430– 439. 13835175
  98. Sukharev SA, Pleshakova OV, Moshnikova AB, Sadovnikov VB, and Gaziev AI (1997). Age- and radiation-dependent changes in carbonyl content, susceptibility to proteolysis, and antigenicity of soluble rat liver proteins. Comparative biochemistry and physiology Part B, Biochemistry & molecular biology 116, 333– 338. 9114493
  99. Terman A, and Brunk UT (1998). Ceroid/lipofuscin formation in cultured human fibroblasts: the role of oxidative stress and lysosomal proteolysis. Mechanisms of ageing and development 104, 277– 291. 9818731
  100. Terman A, and Brunk UT (2004). Lipofuscin. The international journal of biochemistry & cell biology 36, 1400– 1404. 15147719
  101. Terman A, Dalen H, Eaton JW, Neuzil J, and Brunk UT (2003). Mitochondrial recycling and aging of cardiac myocytes: the role of autophagocytosis. Experimental gerontology 38, 863– 876. 12915208
  102. Terman A, Kurz T, Gustafsson B, and Brunk UT (2008). The involvement of lysosomes in myocardial aging and disease. Current cardiology reviews 4, 107– 115. 19936285 PMC2779350
  103. Turk B, Bieth JG, Bjork I, Dolenc I, Turk D, Cimerman N, Kos J, Colic A, Stoka V, and Turk V (1995). Regulation of the activity of lysosomal cysteine proteinases by pH-induced inactivation and/or endogenous protein inhibitors, cystatins. Biological chemistry Hoppe-Seyler 376, 225– 230. 7626231
  104. Turk B, Dolenc I, Lenarcic B, Krizaj I, Turk V, Bieth JG, and Bjork I (1999). Acidic pH as a physiological regulator of human cathepsin L activity. European journal of biochemistry 259, 926– 932. 10092883
  105. Turk B, Dolenc I, Turk V, and Bieth JG (1993). Kinetics of the pH-induced inactivation of human cathepsin L. Biochemistry 32, 375– 380. 7678196
  106. Turk B, Dolenc I, Zerovnik E, Turk D, Gubensek F, and Turk V (1994). Human cathepsin B is a metastable enzyme stabilized by specific ionic interactions associated with the active site. Biochemistry 33, 14800– 14806. 7993907
  107. Turk B, and Turk V (2009). Lysosomes as “suicide bags” in cell death: myth or reality? The Journal of biological chemistry 284, 21783– 21787. 19473965 PMC2755904
  108. Vilchez D, Simic MS, and Dillin A (2014). Proteostasis and aging of stem cells. Trends in cell biology 24, 161– 170. 24094931
  109. Villalpando Rodriguez GE, and Torriglia A (2013). Calpain 1 induce lysosomal permeabilization by cleavage of lysosomal associated membrane protein 2. Biochimica et biophysica acta 1833, 2244– 2253. 23747342
  110. von Bernhardi R, Eugenin-von Bernhardi L, and Eugenin J (2015). Microglial cell dysregulation in brain aging and neurodegeneration. Frontiers in aging neuroscience 7, 124. 26257642 PMC4507468
  111. Wang S, Tsun ZY, Wolfson RL, Shen K, Wyant GA, Plovanich ME, Yuan ED, Jones TD, Chantranupong L, Comb W, (2015). Metabolism. Lysosomal amino acid transporter SLC38A9 signals arginine sufficiency to mTORC1. Science 347, 188– 194. 25567906 PMC4295826
  112. Wang Y, and Floor E (1998). Hydrogen peroxide inhibits the vacuolar H+-ATPase in brain synaptic vesicles at micromolar concentrations. Journal of neurochemistry 70, 646– 652. 9453558
  113. Ward ME, Chen R, Huang HY, Ludwig C, Telpoukhovskaia M, Taubes A, Boudin H, Minami SS, Reichert M, Albrecht P, (2017). Individuals with progranulin haploinsufficiency exhibit features of neuronal ceroid lipofuscinosis. Science translational medicine 9. PMC5526610 28404863
  114. Wendt W, Zhu XR, Lubbert H, and Stichel CC (2007). Differential expression of cathepsin X in aging and pathological central nervous system of mice. Experimental neurology 204, 525– 540. 17306794
  115. Williamson WR, and Hiesinger PR (2010). On the role of v-ATPase V0a1-dependent degradation in Alzheimer disease. Communicative & integrative biology 3, 604– 607. 21331254 PMC3038078
  116. Wolfe DM, Lee JH, Kumar A, Lee S, Orenstein SJ, and Nixon RA (2013). Autophagy failure in Alzheimer’s disease and the role of defective lysosomal acidification. The European journal of neuroscience 37, 1949– 1961. 23773064 PMC3694736
  117. Wright WE, Brasiskyte D, Piatyszek MA, and Shay JW (1996). Experimental elongation of telomeres extends the lifespan of immortal x normal cell hybrids. The EMBO journal 15, 1734– 1741. 8612598 PMC450086
  118. Yamashima T (2016). Can ‘calpain-cathepsin hypothesis’ explain Alzheimer neuronal death? Ageing research reviews 32, 169– 179. 27306474
  119. Yousefi S, Perozzo R, Schmid I, Ziemiecki A, Schaffner T, Scapozza L, Brunner T, and Simon HU (2006). Calpain-mediated cleavage of Atg5 switches autophagy to apoptosis. Nature cell biology 8, 1124– 1132. 16998475
  120. Zoncu R, Efeyan A, and Sabatini DM (2011b). mTOR: from growth signal integration to cancer, diabetes and ageing. Nature reviews Molecular cell biology 12, 21– 35. 21157483 PMC3390257

Authors
Nixon, R. A.
Affiliations
Nathan Kline Institute for Psychiatric Research (US)
Corresponding author
Nixon, Ralph A.
Venue
Biochimica et Biophysica Acta (BBA) - Proteins and Proteomics
Publisher
Elsevier BV
Published
2020-09
Volume
1868
Issue
9
Pages
140443
ISSN
1570-9639 (ISSN-L)
OpenAlex
W3024127790
Cited by
149
References
139
Citations by year
2026: 31 · 2025: 24 · 2024: 30 · 2023: 21 · 2022: 20 · 2021: 18 · 2020: 4 · 2019: 1
FWCI
2.30
Type
journal article
Language
en
Open access
Locations
  • Biochimica et Biophysica Acta (BBA) - Proteins and Proteomics (publishedVersion)
  • PubMed (publishedVersion)
  • PubMed Central (acceptedVersion)
Funders
National Institutes of Health
Topics
  • Health Sciences › Medicine › Epidemiology › Autophagy in Disease and Therapy
  • Health Sciences › Medicine › Physiology › Lysosomal Storage Disorders Research
  • Life Sciences › Biochemistry, Genetics and Molecular Biology › Aging › Genetics, Aging, and Longevity in Model Organisms
Keywords
lysosomes, cellular aging, lysosomal acidification, autophagy, lysosomal storage disease, Alzheimer's disease, Parkinson's disease, lysosomal pH, lifespan extension, neuronal function, protein clearance
MeSH terms
Aging, Alzheimer Disease, Animals, Autophagy, Humans, Hydrogen-Ion Concentration, Hydrolases, Lysosomes, Parkinson Disease, Oxidative Stress, Neurodegenerative Diseases, Proteolysis

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