The control of lipid metabolism by mRNA splicing in Drosophila
Open accessAbstract
The storage of lipids is an evolutionarily conserved process that is important for the survival of organisms during shifts in nutrient availability. Triglycerides are stored in lipid droplets, but the mechanisms of how lipids are stored in these structures are poorly understood. Previous in vitro RNAi screens have implicated several components of the spliceosome in controlling lipid droplet formation and storage, but the in vivo relevance of these phenotypes is unclear. In this study, we identify specific members of the splicing machinery that are necessary for normal triglyceride storage in the Drosophila fat body. Decreasing the expression of the splicing factors U1-70K, U2AF38, U2AF50 in the fat body resulted in decreased triglyceride levels. Interestingly, while decreasing the SR protein 9G8 in the larval fat body yielded a similar triglyceride phenotype, its knockdown in the adult fat body resulted in a substantial increase in lipid stores. This increase in fat storage is due in part to altered splicing of the gene for the β-oxidation enzyme CPT1, producing an isoform with less enzymatic activity. Together, these data indicate a role for mRNA splicing in regulating lipid storage in Drosophila and provide a link between the regulation of gene expression and lipid homeostasis.
The claims and statistics of this paper haven’t been checked yet.
Run the check — free, no account needed. It reads the open-access text and checks the sources it cites.
Integrity signals
Registry
Cites
Statistics
Claims the paper makes
The claims and statistics of this paper haven’t been checked yet.
Run the check — free, no account needed. It reads the open-access text and checks the sources it cites.
Claims other papers make about this one
Each is checked against this paper’s own text: does it say what the citing paper says it does?
A few of these non-canonical functions have been associated with lipid droplets in other organisms like Drosophila melanogaster and in other cell systems.
“Interestingly, a few of these non-canonical functions have been associated with lipid droplets in other organisms like Drosophila melanogaster46,66 and in other cell systems3,9.”
From APOE genotypes differentially remodel the astrocytic lipid droplet proteome to shape lipid droplet dynamics (2026) · cites this paper as [46]
The iPSC-derived astrocyte lipid droplet-associated proteome is enriched in non-canonical functions including spliceosome and antigen presentation.
“In addition to the canonical functions in lipid storage, the iPSC-derived astrocyte lipid droplet-associated proteome was enriched in non-canonical functions. These include functions related to the spliceosome, which has been previously linked to lipid droplet biology46, as well as antigen presentation.”
From APOE genotypes differentially remodel the astrocytic lipid droplet proteome to shape lipid droplet dynamics (2026) · cites this paper as [46]
Self-check
Percentages, sums and reported differences re-computed from the paper’s own numbers.
The self-check needs the paper’s full text.
Cites
No references could be resolved yet.
Research works printed but not linked: 22
- [1]Walther TC Farese RV Jr Lipid droplets and cellular lipid metabolism Annu Rev Biochem 81 2012 687 714 22524315 PMC3767414
- [2]Beller M Sztalryd C Southall N Bell M Jackle H Auld DS Oliver B COPI complex is a regulator of lipid homeostasis PLoS Biol 6 2008 e292 19067489 PMC2586367
- [3]Guo Y Walther TC Rao M Stuurman N Goshima G Terayama K Wong JS Vale RD Walter P Farese RV Functional genomic screen reveals genes involved in lipid-droplet formation and utilization Nature 453 2008 657 661 18408709 PMC2734507
- [4]Wang ET Sandberg R Luo S Khrebtukova I Zhang L Mayr C Kingsmore SF Schroth GP Burge CB Alternative isoform regulation in human tissue transcriptomes Nature 456 2008 470 476 18978772 PMC2593745
- [5]Wang GS Cooper TA Splicing in disease: disruption of the splicing code and the decoding machinery Nat Rev Genet 8 2007 749 761 17726481
- [6]Amir-Ahmady B Salati LM Regulation of the processing of glucose-6-phosphate dehydrogenase mRNA by nutritional status J Biol Chem 276 2001 10514 10523 11124967
- [7]Pihlajamaki J Lerin C Itkonen P Boes T Floss T Schroeder J Dearie F Crunkhorn S Burak F Jimenez-Chillaron JC Kuulasmaa T Miettinen P Park PJ Nasser I Zhao Z Zhang Z Xu Y Wurst W Ren H Morris AJ Stamm S Goldfine AB Laakso M Patti ME Expression of the splicing factor gene SFRS10 is reduced in human obesity and contributes to enhanced lipogenesis Cell Metab 14 2011 208 218 21803291 PMC3167228
- [8]Graveley BR Brooks AN Carlson JW Duff MO Landolin JM Yang L Artieri CG van Baren MJ Boley N Booth BW Brown JB Cherbas L Davis CA Dobin A Li R Lin W Malone JH Mattiuzzo NR Miller D Sturgill D Tuch BB Zaleski C Zhang D Blanchette M Dudoit S Eads B Green RE Hammonds A Jiang L Kapranov P Langton L Perrimon N Sandler JE Wan KH Willingham A Zhang Y Zou Y Andrews J Bickel PJ Brenner SE Brent MR Cherbas P Gingeras TR Hoskins RA Kaufman TC Oliver B Celniker SE The developmental transcriptome of Drosophila melanogaster Nature 471 2011 473 479 21179090 PMC3075879
- [9]Baker KD Thummel CS Diabetic larvae and obese flies-emerging studies of metabolism in Drosophila Cell Metab 6 2007 257 266 17908555 PMC2231808
- [10]Leopold P Perrimon N Drosophila and the genetics of the internal milieu Nature 450 2007 186 188 17994083
- [11]Asha H Nagy I Kovacs G Stetson D Ando I Dearolf CR Analysis of Ras-induced overproliferation in Drosophila hemocytes Genetics 163 2003 203 215 12586708 PMC1462399
- [12]Georgel P Naitza S Kappler C Ferrandon D Zachary D Swimmer C Kopczynski C Duyk G Reichhart JM Hoffmann JA Drosophila immune deficiency (IMD) is a death domain protein that activates antibacterial defense and can promote apoptosis Dev Cell 1 2001 503 514 11703941
- [13]DiAngelo JR Birnbaum MJ Regulation of fat cell mass by insulin in Drosophila melanogaster Mol Cell Biol 29 2009 6341 6352 19822665 PMC2786867
- [14]Ja WW Carvalho GB Mak EM de la Rosa NN Fang AY Liong JC Brummel T Benzer S Prandiology of Drosophila and the CAFE assay Proc Natl Acad Sci USA 104 2007 8253 8256 17494737 PMC1899109
- [15]Price NT Jackson VN Muller J Moffat K Matthews KL Orton T Zammit VA Alternative exon usage in the single CPT1 gene of Drosophila generates functional diversity in the kinetic properties of the enzyme: differential expression of alternatively spliced variants in Drosophila tissues J Biol Chem 285 2010 7857 7865 20061394 PMC2832936
- [16]Kornblihtt AR Schor IE Allo M Dujardin G Petrillo E Munoz MJ Alternative splicing: a pivotal step between eukaryotic transcription and translation Nat Rev Mol Cell Biol 14 2013 153 165 23385723
- [17]Berglund JA Abovich N Rosbash M A cooperative interaction between U2AF65 and mBBP/SF1 facilitates branchpoint region recognition Genes Dev 12 1998 858 867 9512519 PMC316625
- [18]Berglund JA Chua K Abovich N Reed R Rosbash M The splicing factor BBP interacts specifically with the pre-mRNA branchpoint sequence UACUAAC Cell 89 1997 781 787 9182766
- [19]Cristancho AG Lazar MA Forming functional fat: a growing understanding of adipocyte differentiation Nat Rev Mol Cell Biol 12 2011 722 734 21952300 PMC7171550
- [20]Long JC Caceres JF The SR protein family of splicing factors: master regulators of gene expression Biochem J 417 2009 15 27 19061484
- [21]Cavaloc Y Bourgeois CF Kister L Stevenin J The splicing factors 9G8 and SRp20 transactivate splicing through different and specific enhancers RNA 5 1999 468 483 10094314 PMC1369774
- [22]Schaal TD Maniatis T Selection and characterization of pre-mRNA splicing enhancers: identification of novel SR protein-specific enhancer sequences Mol Cell Biol 19 1999 1705 1719 10022858 PMC83964
Cited by
Sorted by citations
Cuní-López, C., Root, J. T., Hao, Y., Blomberg, N., Koppes-den Hertog, S. J., Sacks, D., Trujillo, A. E., Ghirlando, R., Kowal, I., Epstein, J., et al. (2026) · Nature Communications · doi:10.1038/s41467-026-76565-6
- Authors
- Gingras, R. M., Warren, M. E., Nagengast, A. A., & DiAngelo, J. R.
- Affiliations
- Hofstra University (US)
- Widener University (US)
- Corresponding author
- Nagengast, Alexis A.
- DiAngelo, Justin R.
- Venue
- Biochemical and Biophysical Research Communications
- Publisher
- Elsevier BV
- Published
- 2014-01
- Volume
- 443
- Issue
- 2
- Pages
- 672-676
- ISSN
- 0006-291X (ISSN-L)
- PMC
- PMC4412844
- OpenAlex
- W2002885715
- Cited by
- 20
- References
- 0
- Citations by year
- 2025: 1 · 2024: 3 · 2023: 2 · 2022: 5 · 2021: 1 · 2020: 1 · 2019: 3 · 2018: 1 · 2017: 2 · 2016: 1
- FWCI
- 0.13
- Type
- journal article
- Language
- en
- Open access
- green
- www.ncbi.nlm.nih.gov
- Locations
- Biochemical and Biophysical Research Communications (publishedVersion)
- PubMed (publishedVersion)
- PubMed Central (acceptedVersion)
- Funders
- NSF
- Topics
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › RNA Research and Splicing
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Biochemistry › Lipid metabolism and biosynthesis
- Health Sciences › Medicine › Cardiology and Cardiovascular Medicine › Lipid metabolism and disorders
- Keywords
- mRNA splicing, lipid metabolism, triglyceride storage, lipid droplets, fat body, Drosophila, spliceosome, U1-70K, carnitine palmitoyltransferase 1, fatty acid beta-oxidation, alternative splicing, lipid homeostasis
- MeSH terms
- Adipose Tissue, Animals, Drosophila, RNA Splicing, RNA, Messenger, RNA-Binding Proteins, Animals, Genetically Modified, Lipid Metabolism
About these checks
Registry, retraction, Cites and statistics results are computed, not judged, with one exception: a printed reference that no index lists is read once by a model before it counts as a citation error. Claims are extracted by a model and kept only when their quote appears verbatim in the text; each cited source is then checked, with a model’s help, for whether it says what the claim relies on. Those verdicts can be wrong — read the claim’s quote and the cited source before relying on one.
Statistics and arithmetic are recomputed, not judged.
Confidence bands are shown only for fields calibrated on our annotated test set. None is calibrated yet, so no band is shown.
What counts as a claim ›How we measure confidence ›How we check this ›
Are you an author, or do you see a problem with this page? Request a review