Functional evidence of post-transcriptional regulation by pseudogenes.
Abstract
Pseudogenes have been mainly considered as functionless evolutionary relics since their discovery in 1977. However, multiple mechanisms of pseudogene functionality have been proposed both at the transcriptional and post-transcriptional level. This review focuses on the role of pseudogenes as post-transcriptional regulators. Two lines of research have recently presented strong evidence of their potential function as post-transcriptional regulators of the corresponding parental genes from which they originate. First, pseudogene genomic sequences can encode siRNAs. Second, pseudogene transcripts can act as indirect post-transcriptional regulators decoying ncRNA, in particular miRNAs that target the parental gene. This has been demonstrated for PTEN and KRAS, two genes involved in tumorigenesis. The role of pseudogenes in disease has not been proven and seems to be the next research landmark. In this review, we chronicle the events following the initial discovery of the 'useless' pseudogene to its breakthrough as a functional molecule with hitherto unbeknownst potential to influence human disease.
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Recent evidence suggests that some pseudogenes are actively transcribed and play critical roles in gene regulation.
“recent evidence suggests that some are actively transcribed and play critical roles in gene regulation (Zheng and Gerstein 2007; Muro et al. 2011; Poliseno 2012).”
From RNA-Seq Alignment to Individualized Genomes Improves Transcript Abundance Estimates in Multiparent Populations (2014) · cites this paper as Muro et al. 2011
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Gene Losses during Human Origins
Wang, X., Grus, W. E., & Zhang, J. (2006) · PLoS Biology · doi:10.1371/journal.pbio.0040052 · Cited by 246 · see citing works
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Emergence and evolution of the renin-angiotensin-aldosterone system
Fournier, D., Luft, F. C., Bader, M., Ganten, D., & Andrade-Navarro, M. A. (2012) · Journal of Molecular Medicine · doi:10.1007/s00109-012-0894-z · Cited by 165 · see citing works
Self-citationMunger, S. C., Raghupathy, N., Choi, K., Simons, A. K., Gatti, D. M., Hinerfeld, D. A., Svenson, K. L., Keller, M. P., Attie, A. D., Hibbs, M. A., et al. (2014) · Genetics · doi:10.1534/genetics.114.165886 · Cited by 85 · see citing works
- Authors
- Muro, E. M., Mah, N., & Andrade-Navarro, M. A.
- Affiliations
- Max Delbrück Center (DE)
- Corresponding author
- Muro, Enrique M.
- Venue
- Biochimie
- Publisher
- Elsevier BV
- Published
- 2011-11
- Volume
- 93
- Issue
- 11
- Pages
- 1916-1921
- ISSN
- 0037-9042 (ISSN-L)
- 0300-9084
- OpenAlex
- W2067806955
- Cited by
- 75
- References
- 1
- Citations by year
- 2026: 1 · 2025: 2 · 2023: 3 · 2022: 4 · 2021: 7 · 2020: 5 · 2019: 2 · 2018: 3 · 2017: 4 · 2016: 6 · 2015: 4 · 2014: 12 · 2013: 11 · 2012: 11
- FWCI
- 0.79
- Type
- journal article
- Language
- en
- Open access
- closed
- Locations
- Biochimie (publishedVersion)
- PubMed (publishedVersion)
- Topics
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Cancer Research › Cancer-related molecular mechanisms research
- Life Sciences › Agricultural and Biological Sciences › Plant Science › Chromosomal and Genetic Variations
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › RNA Research and Splicing
- Keywords
- pseudogenes, post-transcriptional regulation, microRNA sponging, siRNA, non-coding RNA, PTEN, KRAS, carcinogenesis
- MeSH terms
- Animals, Disease, Gene Expression Regulation, Humans, Pseudogenes, RNA Processing, Post-Transcriptional, Transcription, Genetic, Evolution, Molecular, RNA Stability, Genomics, RNA, Small Interfering, MicroRNAs, Mice
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