The DOI matches its Crossref record; 71 of the 71 references it cites were found in a registry or an index.
Determination of Ensemble-Average Pairwise Root Mean-Square Deviation from Experimental B-Factors
Open accessOverview
The claims and statistics of this paper haven’t been checked yet.
Run the check — free, no account needed. It reads the open-access text and checks the sources it cites.
Integrity signals
Registry
Cites
Statistics
Verification
Claims the paper makes
The claims and statistics of this paper haven’t been checked yet.
Run the check — free, no account needed. It reads the open-access text and checks the sources it cites.
Self-check
Percentages, sums and reported differences re-computed from the paper’s own numbers.
The self-check needs the paper’s full text.
Citations
Cites
VMD: visual molecular dynamics
Humphrey, W., Dalke, A., & Schulten, K. (1996) · Journal of Molecular Graphics · doi:10.1016/0263-7855(96)00018-5 · Cited by 66,952
GROMACS 3.0: a package for molecular simulation and trajectory analysis
Lindahl, E., Hess, B., & van der Spoel, D. (2001) · Journal of Molecular Modeling · doi:10.1007/s008940100045 · Cited by 6,977
Statistical mechanics of chain molecules
Flory, P. J., & Volkenstein, M. (1969) · Biopolymers · doi:10.1002/bip.1969.360080514 · Cited by 6,427
Jorgensen, W. L., & Tirado-Rives, J. (1988) · Journal of the American Chemical Society · doi:10.1021/ja00214a001 · Cited by 4,997
A solution for the best rotation to relate two sets of vectors
Kabsch, W. (1976) · Acta Crystallographica Section A · doi:10.1107/s0567739476001873 · Cited by 3,187
Rattle: A “velocity” version of the shake algorithm for molecular dynamics calculations
Andersen, H. C. (1983) · Journal of Computational Physics · doi:10.1016/0021-9991(83)90014-1 · Cited by 3,081
Duan, Y., & Kollman, P. A. (1998) · Science · doi:10.1126/science.282.5389.740 · Cited by 1,333
A discussion of the solution for the best rotation to relate two sets of vectors
Kabsch, W. (1978) · Acta Crystallographica Section A · doi:10.1107/s0567739478001680 · Cited by 1,151
Temperature-dependent X-ray diffraction as a probe of protein structural dynamics
Frauenfelder, H., Petsko, G. A., & Tsernoglou, D. (1979) · Nature · doi:10.1038/280558a0 · Cited by 1,149
Prediction of chain flexibility in proteins: A tool for the selection of peptide antigens
Karplus, P. A., & Schulz, G. E. (1985) · Naturwissenschaften · doi:10.1007/bf01195768 · Cited by 1,149
Cited by
Integrative structure and functional anatomy of a nuclear pore complex
Kim, S. J., Fernandez-Martinez, J., Nudelman, I., Shi, Y., Zhang, W., Raveh, B., Herricks, T., Slaughter, B. D., Hogan, J. A., Upla, P., et al. (2018) · Nature · doi:10.1038/nature26003 · Cited by 490
Susan-Resiga, D., Girard, E., Kiss, R. S., Essalmani, R., Hamelin, J., Asselin, M.-C., Awan, Z., Butkinaree, C., Fleury, A., Soldera, A., et al. (2017) · Journal of Biological Chemistry · doi:10.1074/jbc.m116.769430 · Cited by 35
Representing structures of the multiple conformational states of proteins
Ramelot, T. A., Tejero, R., & Montelione, G. T. (2023) · Current Opinion in Structural Biology · doi:10.1016/j.sbi.2023.102703 · Cited by 26
Peck Justice, S. A., Barron, M. P., Qi, G. D., Wijeratne, H. R. S., Victorino, J. F., Simpson, E. R., Vilseck, J. Z., Wijeratne, A. B., & Mosley, A. L. (2020) · Journal of Biological Chemistry · doi:10.1074/jbc.ra120.014576 · Cited by 28
Peck Justice, S. A., Qi, G., Wijeratne, H. R. S., Victorino, J. F., Simpson, E. R., Wijeratne, A. B., & Mosley, A. L. (2019) · doi:10.1101/2019.12.30.891267 · Cited by 28
Metadata
- Authors
- Kuzmanic, A., & Zagrovic, B.
- Venue
- Biophysical Journal
- Publisher
- Elsevier BV
- Published
- 2010-03
- Volume
- 98
- Issue
- 5
- Pages
- 861-871
- ISSN
- 0006-3495 (ISSN-L)
- OpenAlex
- W1979915001
- Cited by
- 447
- References
- 71
- FWCI
- 1.42
- Type
- journal article
- Language
- en
- Open access
- bronze
About these checks
Registry, retraction, Cites and statistics results are computed, not judged, with one exception: a printed reference that no index lists is read once by a model before it counts as a citation error. Claims are extracted by a model and kept only when their quote appears verbatim in the text; each cited source is then checked, with a model’s help, for whether it says what the claim relies on. Those verdicts can be wrong — read the claim’s quote and the cited source before relying on one.
Statistics and arithmetic are recomputed, not judged.
Confidence bands are shown only for fields calibrated on our annotated test set. None is calibrated yet, so no band is shown.
What counts as a claim ›How we measure confidence ›How we check this ›
Are you an author, or do you see a problem with this page? Request a review
How to cite
Cite CoChat for the checks on this page, and the paper for its own findings.
- This page
- CoChat. (2026). Citation check: Determination of Ensemble-Average Pairwise Root Mean-Square Deviation from Experimental B-Factors. https://app.cochat.ai/papers/10.1016/j.bpj.2009.11.011
- The paper
- Kuzmanic, A., & Zagrovic, B. (2010). Determination of Ensemble-Average Pairwise Root Mean-Square Deviation from Experimental B-Factors. Biophysical Journal. https://doi.org/10.1016/j.bpj.2009.11.011
Data sources
Bibliographic data: Semantic Scholar, OpenAlex, Crossref.
Contains information from the Semantic Scholar Academic Graph Datasets, made available under the ODC Attribution License (ODC-BY 1.0).
Semantic Scholar’s data is described in: Kinney, R., et al. (2023). The Semantic Scholar Open Data Platform. arXiv:2301.10140.