DNA Replication through G-Quadruplex Motifs Is Promoted by the Saccharomyces cerevisiae Pif1 DNA Helicase
Paeschke, Katrin, Capra, John A., Zakian, Virginia A.·2011·Cell
Cited by (505)
Items 301–400 of 505
- Quantitative analysis and prediction of G-quadruplex forming sequences in double-stranded DNAMinji Kim, Alex Kreig, Chun-Ying Lee, H. Rube, Jacob Calvert, Jun S. Song, S. Myong · 2016 · Nucleic Acids Research
- G-quadruplex-mediated genomic instability drives SNVs in cancerRichl, Tilmann, Kuper, Jochen, Kisker, Caroline · 2024 · Nucleic Acids Research
- The Future of Targeted Therapy for LeiomyosarcomaRyan A. Denu, Amanda M. Dann, Emily Zhi-Yun Keung, Michael S. Nakazawa, Elise F. Nassif · 2024 · Cancers
- HO-1 and Heme: G-Quadruplex Interaction Choreograph DNA Damage Responses and Cancer GrowthGiacomo Canesin, Anindhita Meena Muralidharan, Kenneth D. Swanson, Barbara Wegiel · 2021 · Cells
- The Functional Consequences of Eukaryotic Topoisomerase 1 Interaction with G-Quadruplex DNAAlexandra Berroyer, Nayun Kim · 2020 · Genes
- NMR solution structure of an asymmetric intermolecular leaped V-shape G-quadruplex: selective recognition of the d(G2NG3NG4) sequence motif by a short linear G-rich DNA probeChan-Juan Wan, Wen-Zhong Fu, Hai-Tao Jing, Na Zhang · 2018 · Nucleic Acids Research
- Fundamentals of G-quadruplex biologyF Brad Johnson · 2020 · Annual reports in medicinal chemistry
- Transcription-replication conflicts at chromosomal fragile sites—consequences in M phase and beyondVibe H. Oestergaard, Michael Lisby · 2016 · Chromosoma
- Selective recognition and stabilization of new ligands targeting the potassium form of the human telomeric G-quadruplex DNAYi-Hsien Lin, Show-Mei Chuang, Pei-Ching Wu, Chun-Liang Chen, Sivakamavalli Jeyachandran, S. Lo, Hsu-Shan Huang, Ming-Hon Hou · 2016 · Scientific Reports
- G-quadruplex and G-rich sequence stimulate Pif1p-catalyzed downstream duplex DNA unwinding through reducing waiting time at ss/dsDNA junctionBo Zhang, Wenqiang Wu, Na-Nv Liu, Xiaolei Duan, Ming Li, Shuo‐Xing Dou, Xi‐Miao Hou, Xu‐Guang Xi · 2016 · Nucleic Acids Research
- Helicases at the Replication ForkPeter McGlynn · 2012 · Advances in experimental medicine and biology
- Approaching Protein Barriers: Emerging Mechanisms of Replication Pausing in EukaryotesMaksym Shyian, David Shore · 2021 · Frontiers in Cell and Developmental Biology
- The Pif1 helicase is actively inhibited during meiotic recombination which restrains gene conversion tract lengthDipti Vinayak Vernekar, Giordano Reginato, Céline Adam, Lepakshi Ranjha, Florent Dingli, Marie‐Claude Marsolier‐Kergoat, Damarys Loew, Raphaël Guérois, Bertrand Llorente, Petr Ćejka et al. · 2021 · Nucleic Acids Research
- Probing the Potential Role of Non-B DNA Structures at Yeast Meiosis-Specific DNA Double-Strand Breaks.R. Kshirsagar, Krishnendu Khan, M. Joshi, R. Hosur, K. Muniyappa · 2017 · Biophysical Journal
- Structural characterization of quadruplex DNA with in-cell EPR approaches.Isabelle T. Holder, M. Drescher, J. Hartig · 2013 · Bioorganic & Medicinal Chemistry
- Topoisomerase I and Genome Stability: The Good and the BadJang-Eun Cho, Sue Jinks-Robertson · 2017 · Methods in molecular biology
- Structural Motifs at the Telomeres and Their Role in Regulatory PathwaysAbeer F. R. Alanazi, Gary N. Parkinson, S. Haider · 2024 · Biochemistry
- The Dynamic Regulation of G-Quadruplex DNA Structures by Cytosine MethylationA. Stevens, Lucy de Jong, M. Kennedy · 2022 · International Journal of Molecular Sciences
- Targeting G-quadruplex Forming Sequences with Cas9Hamza Balci, Viktorija Globyte, Chirlmin Joo · 2021 · ACS Chemical Biology
- Loss of Cdc13 causes genome instability by a deficiency in replication-dependent telomere cappingRachel E. Langston, Dominic Palazzola, Erin Bonnell, Raymund J. Wellinger, T. Weinert · 2019 · bioRxiv
- Sneaking Out for Happy Hour: Yeast-Based Approaches to Explore and Modulate Immune Response and Immune EvasionGaelle Angrand, Alicia Quillévéré, Nadège Loaëc, Chrysoula Daskalogianni, A. Granzhan, M. Teulade-Fichou, R. Fåhraeus, Rodrigo Prado Martins, M. Blondel · 2019 · Genes
- Enrichment of G4DNA and a Large Inverted Repeat Coincide in the Mitochondrial Genomes of TermitomycesMathijs Nieuwenhuis, L. V. D. van de Peppel, F. Bakker, B. Zwaan, D. Aanen · 2019 · Genome Biology and Evolution
- Telomerase regulation by the Pif1 helicase: a length-dependent effect?Sonia Stinus, Katrin Paeschke, Michael Chang · 2017 · Current Genetics
- A single molecule study of a fluorescently labeled telomestatin derivative and G-quadruplex interactionsParastoo Maleki, Yue Ma, Keisuke Iida, K. Nagasawa, H. Balci · 2016 · Nucleic Acids Research
- Single-molecule probing the duplex and G4 unwinding patterns of a RecD family helicase.Zhen-Yi Xue, Wenqiang Wu, Xiao-Cong Zhao, Arvind Kumar, Xia Ran, Xing-Hua Zhang, Yu Zhang, Li-jun Guo · 2020 · International Journal of Biological Macromolecules
- Determinants of Replication-Fork Pausing at tRNA Genes in Saccharomyces cerevisiaeRani Yeung, Duncan J. Smith · 2020 · Genetics
- A Novel G-Quadruplex Binding Protein in Yeast—Slx9Silvia Götz, Satyaprakash Pandey, Sabrina Bartsch, Stefan Juranek, Katrin Paeschke · 2019 · Molecules
- The signature motif of the Saccharomyces cerevisiae Pif1 DNA helicase is essential in vivo for mitochondrial and nuclear functions and in vitro for ATPase activityCarly L Geronimo, Saurabh P. Singh, R. Galletto, V. Zakian · 2018 · Nucleic Acids Research
- Coordinating Replication with TranscriptionYathish Jagadheesh Achar, Marco Foiani · 2017 · Advances in experimental medicine and biology
- Discovery of an unprecedented knot-like G-quadruplex peripheral motif.T. H. A. Truong, F. Winnerdy, A. Phan · 2019 · Angewandte Chemie
- The Drosophila melanogaster PIF1 Helicase Promotes Survival During Replication Stress and Processive DNA Synthesis During Double-Strand Gap RepairEce Kocak, S. Dykstra, A. Németh, Catherine G. Coughlin, Kasey Rodgers, Mitch McVey · 2019 · Genetics
- Molecular architecture of G-quadruplex structures generated on duplex Rif1-binding sequencesH. Masai, Naoko Kakusho, Rino Fukatsu, Yue Ma, Keisuke Iida, Yutaka Kanoh, K. Nagasawa · 2018 · Journal of Biological Chemistry
- G-quadruplex structure at intron 2 of TFE3 and its role in Xp11.2 translocation and splicing.S. P. Verma, P. Das · 2018 · Biochimica et Biophysica Acta - General Subjects
- Design, Synthesis, and Evaluation of 2,9‐Bis[(substituted‐aminomethyl)phenyl]‐1,10‐phenanthroline Derivatives as G‐Quadruplex LigandsN. M. Gueddouda, Miyanou Rosales Hurtado, S. Moreau, L. Ronga, Rabindra Nath Das, Solène Savrimoutou, Sandra Rubio, Adrien Marchand, O. Mendoza, M. Marchivie et al. · 2017 · ChemMedChem
- Topoisomerase IB of Deinococcus radiodurans resolves guanine quadruplex DNA structures in vitroSwathi Kota, H. Misra · 2015 · Journal of Biosciences
- Recognition and coacervation of G-quadruplexes by a multifunctional disordered region in RECQ4 helicaseAnna C. Papageorgiou, Michaela Pospíšilová, Jakub Cibulka, Raghib Ashraf, Christopher A. Waudby, Pavel Kadeřávek, Volha Maroz, Karel Kubíček, Zbyněk Prokop, Lumír Krejčí et al. · 2023 · Nature Communications
- Effects of the G-quadruplex-binding drugs quarfloxin and CX-5461 on the malaria parasite Plasmodium falciparumHolly M. Craven, Guilherme Nettesheim, Pietro Cicuta, Andrew M. Blagborough, Catherine J. Merrick · 2023 · International Journal for Parasitology Drugs and Drug Resistance
- Escherichia coli and Neisseria gonorrhoeae UvrD helicase unwinds G4 DNA structures.Kaustubh Shukla, R. Thakur, Debayan Ganguli, D. Rao, G. Nagaraju · 2017 · Biochemical Journal
- Mms1 binds to G-rich regions in Saccharomyces cerevisiae and influences replication and genome stabilityKatharina Wanzek, Eike Schwindt, John A. Capra, Katrin Paeschke · 2017 · Nucleic Acids Research
- Somatic recombination in adult tissues: What is there to learn?Katarzyna Siudeja, Allison J. Bardin · 2017 · Fly
- Mechanistic and biological considerations of oxidatively damaged DNA for helicase-dependent pathways of nucleic acid metabolismJack D. Crouch, Robert M. Brosh · 2016 · Free Radical Biology and Medicine
- Ontogeny of Unstable Chromosomes Generated by Telomere Error in Budding YeastTracey E. Beyer, Ted A. Weinert · 2016 · PLoS Genetics
- G4-quadruplexes and genome instabilityB. Zybailov, M. Sherpa, G. V. Glazko, K. Raney, V. Glazko · 2013 · Molecular Biology
- DNA G-quadruplexes: Structural and functional insightsSagun Jonchhe, Sudipta Lahiri, Eli Rothenberg · 2025 · DNA repair
- Deficiency of both classical and alternative end-joining pathways leads to a synergistic defect in double-strand break repair but not to an increase in homology-dependent gene targeting in Arabidopsis.Laura Merker, Laura Feller, Annika Dorn, Holger Puchta · 2024 · The Plant Journal
- DHX36 maintains genomic integrity by unwinding G‐quadruplexesAyaka Mizumoto, Yuta Yokoyama, Tomoichiro Miyoshi, Masahiro Takikawa, Fuyuki Ishikawa, Mahito Sadaie · 2023 · Genes to Cells
- RNA-DNA hybrids prevent resection at dysfunctional telomeres.Vanessa Borges Pires, Nina Lohner, Tina Wagner, Carolin B Wagner, Maya Wilkens, Mona Hajikazemi, K. Paeschke, F. Butter, B. Luke · 2023 · Cell Reports
- G-quadruplex structures formed by human telomeric DNA and C9orf72 hexanucleotide repeatsChang-Dong Liu, Y. Geng, Haitao Miao, Xiao Shi, Y. You, Naining Xu, Bo Zhou, Guang Zhu · 2019 · Biophysical Reviews
- Alpha Thalassemia/Mental Retardation Syndrome X-Linked, the Alternative Lengthening of Telomere Phenotype, and Gliomagenesis: Current Understandings and Future PotentialJenny He, A. Mansouri, Sunit Das · 2018 · Frontiers in Oncology
- Eukaryotic Pif1 helicase unwinds G-quadruplex and dsDNA using a conserved wedgeZebin Hong, Alicia K. Byrd, Jun Gao, Poulomi Das, Vanessa Qianmin Tan, Emory G Malone, Bertha Osei, John C. Marecki, Reine U. Protacio, W. Wahls et al. · 2024 · Nature Communications
- DNA/RNA helicase DHX36 is required for late stages of spermatogenesisKejia Zhang, Tianxin Zhang, Yujie Zhang, Jinyu Yuan, Xinzhe Tang, Chaobao Zhang, Qianqian Yin, Yonglian Zhang, Ming‐Han Tong · 2022 · Journal of Molecular Cell Biology
- Iso-FRET: an isothermal competition assay to analyze quadruplex formation in vitroYu Luo, Daniela Verga, J. Mergny · 2022 · Nucleic Acids Research
- Fused in Liposarcoma Protein, a New Player in the Regulation of HIV-1 Transcription, Binds to Known and Newly Identified LTR G-QuadruplexesEmanuela Ruggiero, Ilaria Frasson, Elena Tosoni, Matteo Scalabrin, Rosalba Perrone, Maja Marušič, Janez Plavec, Sara N. Richter · 2022 · ACS Infectious Diseases
- Stabilization of VEGF i-motif structure by CpG methylation.Kosuke Kimura, D. Oshikawa, Kazunori Ikebukuro, W. Yoshida · 2022 · Biochemical and Biophysical Research Communications - BBRC
- Targeting Oncogene Promoters and Ribosomal RNA Biogenesis by G-Quadruplex Binding Ligands Translate to Anticancer ActivityYelisetty Venkata Suseela, Pallabi Sengupta, Tanaya Roychowdhury, Suman Panda, S. Talukdar, S. Chattopadhyay, S. Chatterjee, T. Govindaraju · 2021 · ACS Bio & Med Chem Au
- Mgs1 function at G-quadruplex structures during DNA replicationKatrin Paeschke, Peter Burkovics · 2020 · Current Genetics
- Evolution and genomic signatures of spontaneous somatic mutation in Drosophila intestinal stem cellsNick Riddiford, Katarzyna Siudeja, Marius van den Beek, Benjamin Boumard, Allison J. Bardin · 2021 · Genome Research
- Duplex DNA from Sites of Helicase-Polymerase Uncoupling Links Non-B DNA Structure Formation to Replicative StressC. Amparo, Jarrod P. Clark, V. Bedell, J. Murata-Collins, Marianna Martella, F. Pichiorri, E. Warner, Mahmoud A. S. Abdelhamid, Z. A. E. Waller, Steven S. Smith · 2020 · Cancer Genomics & Proteomics
- Synthesis and Telomeric G-Quadruplex-Stabilizing Ability of Macrocyclic Hexaoxazoles Bearing Three Side ChainsYue Ma, Keisuke Iida, Shogo Sasaki, T. Hirokawa, B. Heddi, A. Phan, K. Nagasawa · 2019 · Molecules
- Monomolecular G-quadruplex structures with inversion of polarity sites: new topologies and potentialityAntonella Virgilio, Annapina Russo, Teresa Amato, G. Russo, L. Mayol, V. Esposito, A. Galeone · 2017 · Nucleic Acids Research
- The intrinsic stabilities and structures of alkali metal cationized guanine quadruplexes.M. Azargun, Yasaman Jami-Alahmadi, Travis D. Fridgen · 2017 · Physical Chemistry, Chemical Physics - PCCP
- Effects of CpG methylation on the thermal stability of c-kit2, c-kit*, and c-kit1 G-quadruplex structures.Saowalak Laddachote, Rika Ishii, Wataru Yoshida · 2021 · BBA Advances
- Methods to Study Repeat Fragility and Instability in Saccharomyces cerevisiaeErica J. Polleys, Catherine H. Freudenreich · 2017 · Methods in molecular biology
- Role and Regulation of Pif1 Family Helicases at the Replication ForkEmory G. Malone, Matthew D. Thompson, Alicia K. Byrd · 2022 · International Journal of Molecular Sciences
- Label free detection of auramine O by G-quadruplex-based fluorescent turn-on strategy.Dilan Güner, B. B. Şener, C. Bayraç · 2021 · Spectrochimica Acta Part A - Molecular and Biomolecular Spectroscopy
- Transcription/Replication Conflicts in Tumorigenesis and Their Potential Role as Novel Therapeutic Targets in Multiple MyelomaLaure Dutrieux, Yi‐Ching Lin, Malik Lutzmann, Raphaël Rodriguez, Michel Cogné, Philippe Pasero, Jérôme Moreaux · 2021 · Cancers
- Mgs1 protein supports genome stability via recognition of G‐quadruplex DNA structuresTheresa Zacheja, Agnes Toth, Gábor M. Harami, Qianlu Yang, Eike Schwindt, Mihály Kovács, Katrin Paeschke, Peter Burkovics · 2020 · The FASEB Journal
- Development of G-quadruplex ligands for selective induction of a parallel-type topologyYue Ma, Yamato Tsushima, Mai Sakuma, Shogo Sasaki, Keisuke Iida, Sachiko Okabe, Hiroyuki Seimiya, Takatsugu Hirokawa, Kazuo Nagasawa · 2018 · Organic & Biomolecular Chemistry
- G-Quadruplex Nucleic Acids: Methods and ProtocolsD. Yang, Clement Lin · 2019 · Methods in Molecular Biology
- Analysis of Nucleotide Variations in Human G-Quadruplex Forming Regions Associated with Disease StatesAryan Neupane, Julia H. Chariker, Eric Christian Rouchka · 2023 · Genes
- Pot1b −/− tumors activate G-quadruplex-induced DNA damage to promote telomere hyper-elongationTaylor Takasugi, Peili Gu, Fengshan Liang, Isabelle Staco, Sandy S. Chang · 2023 · Nucleic Acids Research
- Srs2 and Pif1 as Model Systems for Understanding Sf1a and Sf1b Helicase Structure and FunctionAviv Meir, E. Greene · 2021 · Genes
- A Synthetic Pur-based Peptide Binds and Alters G-quadruplex Secondary Structure Present in the Expanded RNA Repeat of C9orf72 ALS/FTDM. Wortman, A. Dagdanova, Andrea M. Clark, E. Godfrey, S. Pascal, E. Johnson, D. C. Daniel · 2020 · Biochimica et biophysica acta. Molecular cell research
- Identification of Saccharomyces cerevisiae Genes Whose Deletion Causes Synthetic Effects in Cells with Reduced Levels of the Nuclear Pif1 DNA HelicaseJennifer Stundon, V. Zakian · 2015 · G3: Genes, Genomes, Genetics
- Rrm3 and Pif1 division of labor during replication through leading and lagging strand G-quadruplexMor Varon, Daniel Dovrat, Jonathan Heuzé, I. Tsirkas, Saurabh P. Singh, P. Pasero, R. Galletto, A. Aharoni · 2023 · Nucleic Acids Research
- Light-Induced Modulation of Chiral Functions in G-Quadruplex–Photochrome SystemsM. Dudek, M. Deiana, Kinga E. Szkaradek, Mikołaj J. Janicki, Z. Pokładek, R. Góra, K. Matczyszyn · 2021 · Journal of Physical Chemistry Letters
- DNA Instability Maintains the Repeat Length of the Yeast RNA Polymerase II C-terminal DomainSummer Morrill, Alexandra E. Exner, Michael Babokhov, Bradley I. Reinfeld, S. Fuchs · 2016 · Journal of Biological Chemistry
- Stabilization of DNA Structures with Poly(ethylene sodium phosphate).R. Moriyama, Y. Iwasaki, Daisuke Miyoshi · 2015 · Journal of Physical Chemistry B
- Biological Clocks: Who in This Place Set Up a Sundial?F. Foster · 2012 · Current Biology
- How DNA secondary structures drive replication fork instabilityAditya Sethi, María Fernández-Casañas, Billie Delpino, Gideon Coster · 2025 · DNA repair
- Structure-based insights into fluorogenic RNA aptamersQianqian Song, Xiaoqing Tai, Qianyu Ren, Aiming Ren · 2024 · Acta Biochimica et Biophysica Sinica
- CMG helicase disassembly is essential and driven by two pathways in budding yeastCristian Polo Rivera, T. Deegan, Karim P. M. Labib · 2024 · bioRxiv
- Chasing Particularities of Guanine- and Cytosine-Rich DNA StrandsMarko Trajkovski, Janez Plavec · 2020 · Molecules
- Genetic Assays to Study Repeat Fragility in Saccharomyces cerevisiaeErica J. Polleys, Catherine H. Freudenreich · 2019 · Methods in molecular biology
- Human DNA Helicase B as a Candidate for Unwinding Secondary CGG Repeat Structures at the Fragile X Mental Retardation GeneG. Guler, Z. Rosenwaks, Jeannine Gerhardt · 2018 · Frontiers in Molecular Neuroscience
- An interplay between multiple sirtuins promotes completion of DNA replication in cells with short telomeresAntoine Simoneau, Étienne Ricard, Hugo Würtele · 2018 · PLoS Genetics
- Structural Analysis of G-Quadruplex Formation at the Human MEST PromoterA. Stevens, M. Kennedy · 2017 · PLoS ONE
- Exploration of the selective recognition of the G-quadruplex in the N-myc oncogene by electrospray ionization mass spectrometry.Fangyuan Li, Han Chen, Jiang Zhou, Gu Yuan · 2015 · Rapid Communications in Mass Spectrometry
- Non-B DNA structures and their contributions to genetic diversity, aging, and diseaseEleftherios Bochalis, Irene Dereki, Guliang Wang, Argyro Sgourou, Karen M. Vásquez, Ilias Georgakopoulos‐Soares · 2026 · Nucleic Acids Research
- Werner helicase interacting protein 1 contributes to G-quadruplex processing in human cellsLili Hegedűs, Agnes Toth, Gábor M. Harami, János Pálinkás, Nargis Karatayeva, Enikő Sajben-Nagy, Szabolcs Bene, Sara Afzali Jaktajdinani, Mihály Kovács, Szilvia Juhász et al. · 2024 · Scientific Reports
- G-quadruplex structural dynamics at MAPK12 promoter dictates transcriptional switch to determine stemness in breast cancerPallabi Sengupta, Anindya Dutta, Y. V. Suseela, Tanaya Roychowdhury, Nilanjan Banerjee, Ananya Dutta, Satyajit Halder, K. Jana, G. Mukherjee, Samit Chattopadhyay et al. · 2024 · Cellular and Molecular Life Sciences
- Molecular underpinnings and environmental drivers of loss of heterozygosity in Drosophila intestinal stem cells.Lara Al Zouabi, Marine Stefanutti, Spyridon Roumeliotis, Gwenn Le Meur, Benjamin Boumard, N. Riddiford, Natalia Rubanova, M. Bohec, Louis Gervais, N. Servant et al. · 2023 · Cell Reports
- Bioactive nutraceuticals as G4 stabilizers: potential cancer prevention and therapy—a critical reviewSatabdi Datta Choudhury, Prateek Kumar, Diptiman Choudhury · 2023 · Naunyn-Schmiedeberg's Archives of Pharmacology
- Dynamic regulation of Pif1 acetylation is crucial to the maintenance of genome stabilityOnyekachi E. Ononye, Christopher W. Sausen, Matthew L. Bochman, Lata Balakrishnan · 2020 · Current Genetics
- Moving fast and breaking things: Incidence and repair of DNA damage within ribosomal DNA repeatsYana P. Blokhina, Abigail L. Buchwalter · 2020 · Mutation research. Fundamental and molecular mechanisms of mutagenesis
- Mms1 is an assistant for regulating G-quadruplex DNA structuresEike Schwindt, Katrin Paeschke · 2017 · Current Genetics
- Quantitative telomeric chromatin isolation protocol for human cellsJana Majerská, Sophie Redon, Joachim Lingner · 2016 · Methods
- Long telomeres: too much of a good thingMichael Chang · 2012 · BioMolecular Concepts
- 19F NMR Spectroscopy for the Analysis of DNA G-Quadruplex Structures Using 19F-Labeled Nucleobase.Takumi Ishizuka, Hong-Liang Bao, Yan Xu · 2019 · Methods in molecular biology
- G-quadruplex stabilization via small molecules as a potential anti-cancer strategyChunshuang Li, Jialian Liu, Ruoxi Wang · 2026 · Cellular & Molecular Biology Letters