Transcriptional and Epigenetic Dynamics during Specification of Human Embryonic Stem Cells

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14. The Future is The Past: Methylation QTLs in Schizophrenia
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15. RNA Polymerase III Subunit POLR3G Regulates Specific Subsets of PolyA+ and SmallRNA Transcriptomes and Splicing in Human Pluripotent Stem Cells
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19. FAM46B is a prokaryotic-like cytoplasmic poly(A) polymerase essential in human embryonic stem cells
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27. Epigenetic Research of Neurodegenerative Disorders Using Patient iPSC‐Based Models
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28. Integrative single-cell omics analyses reveal epigenetic heterogeneity in mouse embryonic stem cells
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29. Phosphorylation state of the histone variant H2A.X controls human stem and progenitor cell fate decisions
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35. DNA methylation patterns suggest the involvement of DNMT3B and TET1 in osteosarcoma development
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36. Parental bias in expression and interaction of genes in the equine placenta
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37. Cell Type-Specific Chromatin Signatures Underline Regulatory DNA Elements in Human Induced Pluripotent Stem Cells and Somatic Cells
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38. Definition of germ layer cell lineage alternative splicing programs reveals a critical role for Quaking in specifying cardiac cell fate
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39. Extensive Epigenetic Changes Accompany Terminal Differentiation of Mouse Hepatocytes After Birth
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40. Integrated loss- and gain-of-function screens define a core network governing human embryonic stem cell behavior
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41. DNA methylation dynamics: identification and functional annotation
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42. From the Psychiatrist’s Couch to Induced Pluripotent Stem Cells: Bipolar Disease in a Dish
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43. Comprehensive epigenomic profiling of human alveolar epithelial differentiation identifies key epigenetic states and transcription factor co-regulatory networks for maintenance of distal lung identity
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44. Energy metabolism in neuronal/glial induction and in iPSC models of brain disorders
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45. Transient histone deacetylase inhibition induces cellular memory of gene expression and 3D genome folding
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46. Phenotype-independent DNA methylation changes in prostate cancer
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47. Native internally calibrated chromatin immunoprecipitation for quantitative studies of histone post-translational modifications
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48. Somatic Reprogramming—Above and Beyond Pluripotency
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49. DNA methylation in adult diffuse gliomas
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50. DDX18 coordinates nucleolus phase separation and nuclear organization to control the pluripotency of human embryonic stem cells
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57. Increased matrix stiffness promotes fibrogenesis of hepatic stellate cells through AP-1-induced chromatin priming
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63. An RNAi screen of RNA helicases identifies eIF4A3 as a regulator of embryonic stem cell identity
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66. DNA methylation patterns in human iPSC-derived sensory neuronal differentiation
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67. The dynamic changes of DNA methylation in primordial germ cell differentiation
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70. YAP1 is essential for self-organized differentiation of pluripotent stem cells
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75. Interplay between Histone and DNA Methylation Seen through Comparative Methylomes in Rare Mendelian Disorders
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80. Maternal factor OTX2 regulates human embryonic genome activation and early development
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83. Community Resources and Technologies Developed Through the NIH Roadmap Epigenomics Program
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96. MLL1 Inhibition and Vitamin D Signaling Cooperate to Facilitate the Expanded Pluripotency State
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97. Terminal keratinocyte differentiation in vitro is associated with a stable DNA methylome
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