Fermented Foods as Experimentally Tractable Microbial Ecosystems

Wolfe, Benjamin E., Dutton, Rachel J.·2015·Cell

Cited by (386)

Items 201–300 of 386

  1. Domestication in dry‐cured meat Penicillium fungi: Convergent specific phenotypes and horizontal gene transfers without strong genetic subdivision
    Ying‐Chu Lo, Jade Bruxaux, Ricardo C. Rodŕıguez de la Vega, Samuel O’Donnell, Alodie Snirc, Monika Coton, Mélanie Le Piver, Stéphanie Le Prieur, Daniel Roueyre, Joëlle Dupont et al. · 2023 · Evolutionary Applications
  2. Interactions between pH and Lactobacillus drove esters’ metabolism during the fermentation of Laobaigan Baijiu
    Xiaojie Geng, Zhiying Ma, Erbao Chen, Xinlei Wang, Bowen Wang, Fuping Zheng, Baoguo Sun, Baoguo Sun, Yuhang Zhang, Zexia Li · 2025 · Food Bioscience
  3. The Microbial Community of Natural Whey Starter: Why Is It a Driver for the Production of the Most Famous Italian Long-Ripened Cheeses?
    Neviani, Erasmo, Levante, Alessia, Gatti, Monica · 2024 · Fermentation
  4. Ecological factors that drive microbial communities in culturally diverse fermented foods
    Arya Gautam, Rahgavi Poopalarajah, Anique R. Ahmad, Bimarsh N. Rana, Tsedenia W Denekew, Nakyeong Ahn, Lina Utenova, Yadu S Kunwor, Nitin N Bhandari, Aashish R. Jha · 2025 · BMC Microbiology
  5. Strong ethanol- and frequency-dependent ecological interactions in a community of wine-fermenting yeasts
    Simon M. Lax, Jeff Gore · 2023 · Communications Biology
  6. Shotgun sequence-based metataxonomic and predictive functional profiles of Pe poke, a naturally fermented soybean food of Myanmar
    Jyoti Prakash Tamang, Pynhunlang Kharnaior, Priyambada Pariyar, Namrata Thapa, Ni Lar, Khin Si Win, Ae Mar, Nyo Nyo · 2021 · PLoS ONE
  7. Expectable diversity patterns in wine yeast communities
    Miguel de Celis, Javier Ruíz, Javier Vicente, Alberto Acedo, Domingo Marquina, Antonio Santos, Ignacio Belda · 2022 · FEMS Yeast Research
  8. Ecology of Contaminant Biotransformation in the Mycosphere: Role of Transport Processes
    Anja Worrich, Lukas Y. Wick, Thomas Banitz · 2018 · Advances in applied microbiology
  9. Plant-associated microbial communities converge in fermentative hydrogen production and form a core microbiome
    Olga Ayala, Arturo Sánchez, Eria Alaide Rebollar, Idania Valdez Vazquez · 2022 · International Journal of Hydrogen Energy
  10. Isolation and identification of pigment-producing filamentous fungus DBFL05 and its pigment characteristics and chemical structure
    Minghui Zhou, Yajun Chen, Xue Fang, Wu Li, Yan Zhang · 2023 · CyTA - Journal of Food
  11. Yeast prion-based metabolic reprogramming induced by bacteria in fermented foods
    Daisuke Watanabe, Hiroshi Takagi · 2019 · FEMS Yeast Research
  12. Exploring sub-species variation in food microbiomes: a roadmap to reveal hidden diversity and functional potential
    Lena Flörl, A Meyer, Nicholas A. Bokulich · 2025 · Applied and Environmental Microbiology
  13. Biofilm-based probiotic delivery system and its application in the food industry
    Shanshan Yang, Xinyu Hu, Weihe Cang, Shuaiqi Ji, Rina Wu, Junrui Wu · 2024 · Food Bioscience
  14. Co-evolution as Tool for Diversifying Flavor and Aroma Profiles of Wines
    Peter Morrison‐Whittle, Soon Lee, Bruno Fedrizzi, Matthew R. Goddard · 2018 · Frontiers in Microbiology
  15. Experimental systems biology approaches reveal interaction mechanisms in model multispecies communities
    Anupama Khare · 2021 · Trends in Microbiology
  16. Fermented Foods and Their Role in Respiratory Health: A Mini-Review
    Periyanaina Kesika, Subramanian Thangaleela, Bhagavathi Sundaram Sivamaruthi, Muruganantham Bharathi, Chaiyavat Chaiyasut · 2022 · Fermentation
  17. The diversity, structure and function of microbial communities changes across aging process of tobacco leaves
    Fan Wang, Yongming Jin, Xiaona Chen, Yao Zhang, Xinglin Jiang, Ge Zhang, Guoqiang Chen, Mingjun Yang, Feifan Leng, Hongtao Li et al. · 2022 · Environmental Research Communications
  18. Effects of Exogenous Yeast and Bacteria on the Microbial Population Dynamics and Outcomes of Olive Fermentations
    Jose Zaragoza, Zachary A. Bendiks, Charlotte Tyler, Mary E. Kable, Thomas R. Williams, Yelizaveta Luchkovska, Elaine Chow, Kyria Boundy‐Mills, Maria L. Marco · 2017 · mSphere
  19. Minerals In Food: Crystal Structures of Ikaite and Struvite From Bacterial Smears On Washed-Rind Cheese
    Gil F. Tansman, Paul S. Kindstedt, John M. Hughes · 2017 · The Canadian Mineralogist
  20. Analysing the dynamics of the bacterial community in pozol, a Mexican fermented corn dough
    Rafael López-Sánchez, Diana Hernández‐Oaxaca, Alejandra Escobar‐Zepeda, Blanca Ramos Cerrillo, Agustı́n López-Munguı́a, Lorenzo Segovia · 2023 · Microbiology
  21. Design of a new model yeast consortium for ecological studies of enological fermentation
    Eléonore Pourcelot, Audrey Vigna, Thérèse Marlin, Virginie Galéote, Thibault Nidelet · 2025 · Peer Community Journal
  22. Correlation between the bacterial community and flavour of fermented fish
    Jin-Le Wang, Feng Zhao, Zuo-Ma Cairang, Xiao-Yi Li, Jie Kong, Shi-Yu Zeng, Meiyan Zhang, Zhenxin Zhao, Xiaoping Zhang · 2021 · Quality Assurance and Safety of Crops & Foods
  23. The inconsistent microbiota of Budu , the Malaysian fermented anchovy sauce, revealed through 16S amplicon sequencing
    Muhammad Zarul Hanifah Md Zoqratt, Han Ming Gan · 2021 · PeerJ
  24. Beer ethanol and iso-α-acid level affect microbial community establishment and beer chemistry throughout wood maturation of beer
    Sofie Bossaert, Tin Kocijan, Valérie Winne, Johanna Schlich, Beatriz Herrera‐Malaver, Kevin J. Verstrepen, Filip Van Opstaele, Gert De Rouck, Sam Crauwels, Bart Lievens · 2022 · International Journal of Food Microbiology
  25. Microbial association networks in cheese: a meta-analysis
    Eugenio Parente, Teresa Zotta, Annamaria Ricciardi · 2021 · bioRxiv (Cold Spring Harbor Laboratory)
  26. Miso, fermented soybean paste, suppresses high-fat/high-sucrose diet-induced muscle atrophy in mice
    Yoshitaka Hashimoto, Takuro Okamura, Ryo Bamba, Yuta Yoshimura, Chihiro Munekawa, Ayumi Kaji, Akane Miki, Saori Majima, Takafumi Senmaru, Emi Ushigome et al. · 2023 · Journal of Clinical Biochemistry and Nutrition
  27. Effects of community ecological network construction on physicochemical, microbial, and quality characteristics of inoculated northeast sauerkraut: A new insight in food fermentation processes
    Jiawang Wang, Liu Xin, Xiang-ao Li, Baohua Kong, Ligang Qin, Qian Chen · 2024 · Food Microbiology
  28. Harboring Starships: The Accumulation of Large Horizontal Gene Transfers in Domesticated and Pathogenic Fungi
    Samuel O’Donnell, Gabriela D Rezende, Jean‐Philippe Vernadet, Alodie Snirc, Jeanne Ropars · 2025 · Genome Biology and Evolution
  29. MiFoDB, a workflow for microbial food metagenomic characterization, enables high-resolution analysis of fermented food microbial dynamics
    Elisa B. Caffrey, Matthew R. Olm, Caroline Isabel Kothe, Hannah Constance Wastyk, Joshua D. Evans, Justin Laine Sonnenburg · 2025 · mSystems
  30. Nutritional composition of tauco as Indonesian fermented soybean paste
    Vika Tresnadiana Herlina, Hanifah Nuryani Lioe, Harsi Dewantari Kusumaningrum, Dede Robiatul Adawiyah · 2022 · Journal of Ethnic Foods
  31. Dynamic Changes in the Microbial Community and Metabolite Profile during the Pile Fermentation Process of Fuzhuan Brick Tea
    Miao-Miao Le, Li-Wen Zhong, Zhi-Wei Ren, Mao-Qiang An, Yanhua Long, Tie-Jun Ling · 2023 · Journal of Agricultural and Food Chemistry
  32. Keystone microbes affect the evolution and ecological coexistence of the community via species/strain specificity
    Qiuxiang Tang, Jun Huang, Suyi Zhang, Hui Qin, Yi Wei Dong, Chao Wang, Delin Li, Rongqing Zhou · 2021 · Journal of Applied Microbiology
  33. Microbiome catalog and dynamics of the Chinese liquor fermentation process
    Xue Hai Zhu, Liangqiang Chen, Pengshuo Yang, Sha Luo, Mengjing Teng, Wenjie Zhu, Yuxue Li, Dan Zhao, Nan Wang, Xiaoke Chen et al. · 2025 · Bioresource Technology
  34. Selenium-enriched lactic acid bacteria inoculation enhances the quality of Paocai by imparting the microbiome and metabolome
    Mingye Peng, Qin Li, Binbin Long, Бо Ли, Zhicong Shen, Ning Xu, Yong Hu, Chao Wang, Chen Yang, Mengzhou Zhou · 2025 · Food Chemistry
  35. Effect of salt reduction on nutritional, functional and sensory aspects of Anhui-style doubanjiang, a traditional Chinese broad bean paste
    Chengtuo Niu, Xianlei Xing, Feiyun Zheng, Chunfeng Liu, Jinjing Wang, Qi Li · 2022 · Systems Microbiology and Biomanufacturing
  36. Phages Shape Microbial Dynamics and Metabolism of a Model Community Mimicking Cider, a Fermented Beverage
    Pierre Ledormand, Nathalie Desmasures, Margot Schlusselhuber, André Sesboüé, Jérôme Ledauphin, Marion Dalmasso · 2022 · Viruses
  37. Penicillium molds impact the transcriptome and evolution of the cheese bacterium Staphylococcus equorum
    Ruby Ye, Christopher Tomo, Neal Chan, Benjamin E. Wolfe · 2023 · mSphere
  38. In Search of Model Ecological Systems for Understanding Specialized Metabolism
    Rita de Cássia Pessotti, Bridget L. Hansen, Matthew F. Traxler · 2018 · mSystems
  39. The dynamics of indigenous epiphytic bacterial and fungal communities of barley grains through the commercial malting process in Western Canada
    Wen Chen, H.Y. Kitty Cheung, Morgan McMillan, Thomas Kelly Turkington, Marta S. Izydorczyk, Tom Gräfenhan · 2022 · Current Research in Food Science
  40. Cultivable microbial diversity, peptide profiles, and bio-functional properties in Parmigiano Reggiano cheese
    Serena Martini, Laura Solà, Alice Cattivelli, Marianna Cristofolini, Valentina Pizzamiglio, Davide Tagliazucchi, Lisa Solieri · 2024 · Frontiers in Microbiology
  41. Identification of Key Parameters Inducing Microbial Modulation during Backslopped Kombucha Fermentation
    Claire Daval, Thierry Tran, François Verdier, Antoine Martin, Hervé Alexandre, Cosette Grandvalet, Raphaëlle Tourdot‐Maréchal · 2024 · Foods
  42. MicNet toolbox: Visualizing and unraveling a microbial network
    Natalia Favila, David Madrigal‐Trejo, Daniel Legorreta, Jazmín Sánchez-Pérez, Laura Espinosa-Asuar, Luis E. Eguiarte, Valeria Souza · 2022 · PLoS ONE
  43. Workshop environment heterogeneity shaped the microbiome and metabolome profiles during Xiasha round of Jiangxiangxing Baijiu
    Cailing Wang, Chenyao Li, Zhiqiang Bin, Guojun Zhu, Shaopei Tang, Jinyu Zhang, Yefu Chen, Dongguang Xiao, Xuewu Guo · 2024 · Food Chemistry X
  44. Wine Fermentation as a Model System for Microbial Ecology and Evolution
    Ignacio Belda, Sergio Izquierdo‐Gea, Belen Benitez‐Dominguez, Javier Ruíz, Jean C. C. Vila · 2025 · Environmental Microbiology
  45. Non-obligate pairwise metabolite cross-feeding suggests ammensalic interactions between Bacillus amyloliquefaciens and Aspergillus oryzae
    Digar Singh, Sang Hee Lee, Choong Hwan Lee · 2022 · Communications Biology
  46. Amplicon Sequencing of the slpH Locus Permits Culture-Independent Strain Typing of Lactobacillus helveticus in Dairy Products
    Aline I. Moser, Daniel Wüthrich, Rémy Bruggmann, Elisabeth Eugster‐Meier, Léo Meile, Stefan Irmler · 2017 · Frontiers in Microbiology
  47. Kombucha as a model system for multispecies microbial cooperation: theoretical promise, methodological challenges and new solutions ‘in solution’
    Alexander May, James Medina, Joe Alcock, Carlo C. Maley, Athena Aktipis · 2017 · bioRxiv (Cold Spring Harbor Laboratory)
  48. Food Fermentations and Flavor: A Curiosity and Creativity Driven Approach for Interdisciplinary and Research-Oriented Science Education
    Pia M. Sörensen · 2023 · Journal of Chemical Education
  49. Potential anticancer agents of Curcuma aeruginosa-based kombucha: In vitro and in silico study
    Fadjar Kurnia Hartati, Dikdik Kurnia, Wirdatun Nafisah, Ifan Bagus Haryanto · 2024 · Food Chemistry Advances
  50. Contributions of Hanseniaspora species to Pinot Noir microbial terroir in Oregon’s Willamette Valley wine region
    Tess Snyder, James Osborne, Chris D. Curtin · 2024 · Applied and Environmental Microbiology
  51. Comprehensive survey of kombucha microbial communities of diverse origins and fermentation practices
    Emna Ben Saad, Anne Friedrich, Frédérique Fischer, Olivier Courot, Joseph Schacherer, Claudine Bleykasten-Grosshans · 2025 · FEMS Yeast Research
  52. Unravelling Microbial Interactions in a Synthetic Broad Bean Paste Microbial Community
    Chunfeng Liu, Feng Yi, Chengtuo Niu, Qi Li · 2024 · Food Microbiology
  53. Probiotic-Fermented Foods and Antimicrobial Stewardship: Mechanisms, Evidence, and Translational Pathways Against AMR
    Karina Teixeira Magalhães‐Guedes · 2025 · Fermentation
  54. Quorum sensing in fermented food microbiomes: Regulatory circuits, functional roles, practical applications, and future perspectives for intelligent fermentation
    Liming Wu, Zinuan Han, Shicong Liang, Fuhao Liang, Ting Lan, ZZ Zhao Zhang, Xiaole Xia · 2026 · Trends in Food Science & Technology
  55. Environmental Selection Shapes Bacterial Community Composition in Traditionally Fermented Maize-Based Foods from Benin, Tanzania and Zambia
    Maarten de Jong, Anna Yu. Alekseeva, Kulwa F. Miraji, Sydney Phiri, Anita Rachel Linnemann, Sijmen E. Schoustra · 2022 · Microorganisms
  56. Fathoming Aspergillus oryzae metabolomes in formulated growth matrices
    Digar Singh, Sunmin Lee, Choong Hwan Lee · 2018 · Critical Reviews in Biotechnology
  57. Association between Intake of Fermented Dairy Product and Diet Quality, Health Beliefs in a Representative Sample of Polish Population
    Anna Danielewicz, Jakub Morze, Katarzyna Staniewska, Aneta Zofia Dąbrowska, Tomasz Sawicki, Zhennai Yang, Maria Baranowska, Małgorzata Darewicz, Justyna Żulewska, Bogusław Staniewski et al. · 2022 · Nutrients
  58. Bacteria and yeasts isolated from different grape varieties
    Miroslava Kačániová, Margarita Terentjeva, Soňa Felšöciová, Eva Ivanišová, Simona Kunová, Jana Žiarovská, Maciej Kluz, Paweł Hanus, Czesław Puchalski, Attila Kántor · 2018 · Potravinarstvo Slovak Journal of Food Sciences
  59. Mutualism-enhancing mutations dominate early adaptation in a microbial community
    Sandeep Venkataram, Huan-Yu Kuo, Erik F. Y. Hom, Sergey Kryazhimskiy · 2021 · bioRxiv (Cold Spring Harbor Laboratory)
  60. Unravelling Metabolic Heterogeneity of Chinese Baijiu Fermentation in Age-Gradient Vessels
    Zijian Miao, Yu Bai, Xinlei Wang, Chao Han, Bowen Wang, Zexia Li, Jinyuan Sun, Fuping Zheng, Yuhang Zhang, Baoguo Sun · 2023 · Foods
  61. Linking Fermented Foods to Microbial Composition and Valorisation: Blueprint for Kenya
    Christopher Khayeka‐Wandabwa, Joseph Kiprop Choge, Anita Rachel Linnemann, Sijmen E. Schoustra · 2024 · Food Reviews International
  62. Serial fermentation in milk generates functionally diverse community lineages with different degrees of structure stabilization
    Chloé Gapp, Alexis Dijamentiuk, Cécile Mangavel, Cécile Callon, Sébastien Theil, Anne‐Marie Revol‐Junelles, Christophe Chassard, Frédéric Borges · 2024 · mSystems
  63. The effect of storage temperature on the physicochemical characteristics, volatile compounds and microbial community of a traditionally fermented dairy product
    Thelma W. Sikombe, Himoonga Bernard Moonga, Anita Rachel Linnemann, Eddy J. Smid, Sijmen E. Schoustra · 2025 · LWT
  64. Guide the design of lactic acid bacteria synthesis community through computational metabolic interaction experimental pipeline
    Xinlei Huang, Liming Wu, Yongyi Zhang, Jian Hua Huang, Yi Luo, Hui Liao, Yongchao Cai, Ling Gao, Xiaole Xia · 2025 · Food Research International
  65. Prokaryotic evolution shapes specialized communities in long term engineered pit mud ecosystem
    Yan Zeng, Xiaozhong Zhong, Lijuan Chai, Xiaojuan Zhang, Zhen‐Ming Lu, Guangqian Liu, Tingyao Tu, Lingfei Lu, Rui Zhang, Hui Yu et al. · 2025 · npj Biofilms and Microbiomes
  66. Effects of seasonal and regional variations on the bacterial and fungal biodiversity of mares’ milk and koumiss in the Almaty and Zhambyl regions of Kazakhstan
    Togzhan Boranbayeva, Aynur Gül Karahan, Maxat Toishimanov, Дулат Жалелов, Ayazhan Bolat · 2025 · International Dairy Journal
  67. Fermented foods offer up a versatile microbial model system
    Alla Katsnelson · 2017 · Proceedings of the National Academy of Sciences
  68. A review on fermented aquatic food storage quality based on heat treatment and water retention technology
    Lawal Adedoyin Isola, Madeeha Hamid MAHMOOD, Asraa Yacoob YOUSIF, Sarmad Ghazi Al‐Shawi, Walid Kamal Abdelbasset, Dmitry Olegovich Bokov, Lakshmi Prasanth Thangavelu · 2022 · Food Science and Technology
  69. Foods may modify responsiveness to cancer immune checkpoint blockers by altering both the gut microbiota and activation of estrogen receptors in immune cells
    Leena A Hilakivi-Clarke, Vivek Verma, Maddie McDermott, Pal Koak, Fábia de Oliveira Andrade · 2022 · Frontiers in Microbiomes
  70. Influence of metabolic guilds on a temporal scale in an experimental fermented food derived microbial community
    Alanna Molly Leale, Ben Auxier, Eddy J. Smid, Sijmen E. Schoustra · 2023 · FEMS Microbiology Ecology
  71. Draft Genome Sequences of Six Lactobacillus pentosus Strains Isolated from Brines of Traditionally Fermented Spanish-Style Green Table Olives
    Beatríz Calero-Delgado, Antonio Manuel Martín-Platero, Antonio J. Pérez‐Pulido, Antonio Benítez‐Cabello, Carlos S. Casimiro‐Soriguer, Manuel Martínez‐Bueno, Francisco Noé Arroyo‐López, Francisco Rodríguez‐Gómez, J. Bautista‐Gallego, Antonio Garrido-Fernández et al. · 2018 · Genome Announcements
  72. Harbouring Starships : The accumulation of large Horizontal Gene Transfers in Domesticated and Pathogenic Fungi
    Samuel O’Donnell, Gabriela D Rezende, Jean‐Philippe Vernadet, Alodie Snirc, Jeanne Ropars · 2024 · bioRxiv (Cold Spring Harbor Laboratory)
  73. Interaction and Metabolic Function of Microbiota during Tibetan Tea Fermentation through Bioaugmentation with Aspergillus niger
    Kunyi Liu, Liyan Han, Qi Wang, Liran Yang, Xiangyu Liu, Bin Jiang, Xu Zeng, Yun Liu, Mingyong Li, Wenwen Jiao et al. · 2023 · Fermentation
  74. Microbial food fermentation: An extraordinary approach to improve food quality employing beneficial microbes
    Rameen Atique, Hafiza Arshi Saeed, Amara Ijaz, Ambreen Talib, Rabbya Rayan Shah, Ayesha Haidar, Areesha Naveed, Javeria Sharif, Ayesha Nadeem, Maryam Latif et al. · 2025 · Food biomacromolecules.
  75. Effects of Temperature on Bacterial Biodiversity and Qualities of Fermented Yucha Products
    Shuai Wang, Jing Han, Jingbo Zhang, Xinping Lin, Huipeng Liang, Shengjie Li, Xiuping Dong, Chaofan Ji · 2019 · Journal of Aquatic Food Product Technology
  76. Creating Products and Services in Food Biotechnology
    Mona Elena Popa, Amalia Carmen Miteluț, Elisabeta Elena Popa, Florentina Matei · 2019 · Springer eBooks
  77. Microbes and the environment
    Maria Aspri, Dimitrios Tsaltas · 2020 · Elsevier eBooks
  78. Strain-specific metabolic endpoints and predictive phase classification in gnotobiotic kimchi fermentation
    Yujin Kim, Se Hee Lee, Mi‐Ja Jung, Jisu Lee, Yeon Bee Kim, Young‐Shick Hong, Tae Woong Whon · 2026 · Food Chemistry
  79. Microbial biotechnology meets ecological theory: a unified framework to design industrial microbial consortia
    Ignacio Belda · 2026 · International Microbiology
  80. Modelling of spatial heterogeneity during solid-state fermentation
    Guangyuan Jin, Jiahe Mao, Shuhan Xin, Yang Zhu, Bowen Wang, Yan Xu · 2026 · LWT
  81. Caracterización fisicoquímica, microbiológica y organoléptica del aguamiel y pulque del Alto Mezquital, Hidalgo
    Carmen Medina Mendoza, Edgar Iván Roldan Cruz, Mauro Vázquez Jahuey · 2023 · Agricultura Sociedad y Desarrollo
  82. Influence of the initial microbiota on eggplant shibazuke pickle and eggplant juice fermentation
    Kazunori Sawada, Takuji Yamada · 2024 · Microbiology Spectrum
  83. Isolation, Identification and Analysis of Probiotic Characteristics of Lactobacillus spp. from Regional Yoghurts from Surendranagar District, Gujarat
    Manish Soni, Hemaliben R. Shah, Shraddhaben M. Patel · 2021 · Asian Journal of Dairy and Food Research
  84. Incorporation of Multi-Strain Probiotic Preparation in a Traditional Brazilian Cheese: Effects on Microbiological Safety and Bacterial Community
    Moysés Estevão De Souza Freitas Pehrson, Viviane Lívia Carvalho de Souza, ISMAEL MACIEL DE MANCILHA · 2019 · Journal of Food Research
  85. Revealing the underlying potential mechanisms of lactic acid bacteria-mediated anaerobic fermentation of native grass by microbiome and metagenomic
    Sihan You, Yushan Jia, Gentu Ge, Shuai Du · 2025 · Journal of Agriculture and Food Research
  86. Comparative volatilome profiling of milk kefir and cereal-based kefir analogues fermented with milk and water kefir grains
    Martina Moretton, Iuliia Khomenko, Hülya Cunedioğlu, Giuseppe Spano, Vittorio Capozzi, Franco Biasioli A, Mariagiovanna Fragasso · 2025 · Food Bioscience
  87. Cryopreservation of fermented table olives microbiomes: an integrative case study on viability, functional stability, and biobanking applications
    Katia Gialluisi, Luciana De Vero, Giuseppe Petruzzino, Laura Verrone, Giancarlo Perrone, Antonio Moretti, Vittorio Capozzi, Massimo Ferrara · 2026 · Food Research International
  88. Ethnic fermentation secrets of Northeast India and emerging functional food insights
    Puranjoy Mipun, Parismita Sarma, Gargee Dey, Lily Aye Terangpi, Bipankar Hajong, Dipjyoti Chakraborty, Diwakar Kshetriya, Santi M. Mandal, Roy Dinata, Piyush Baindara · 2026 · Food Research International
  89. Reframing the substrate as an active process component in fungal solid-state fermentation of foods
    Simon Müller, Carole Zermatten, Till Germerdonk, Patrick Alberto Rühs · 2026 · npj Science of Food
  90. Water kefir as a paradigm for multi-omics and genome-scale metabolic modelling in fermented food
    Anik Khan, Samuel Breselge, A. Kate O’Mahony, Órla O’Sullivan, Paul D. Cotter, Sinéad N. McCarthy, Jennifer Mahony, John G. Kenny · 2026 · npj Biofilms and Microbiomes
  91. Fermented food microbiome: influence on oral and gut microbiota, and human health
    Dongyeop Kim, Hae-In Joe, Jin‐Woo Bae, Gary D. Wu, Charlene W. Compher, Hyun Koo · 2026 · Nature Reviews Microbiology
  92. Microbiomic Prospects in Fermented Food and Beverage Technology
    Paraskevi Bouki, Chrysanthi Mitsagga, Manousos E. Kambouris, Ioannis Giavasis · 2020 · Elsevier eBooks
  93. Review on Dietary Factors in Fermented Foods and their Efficacy in Disease Management
    Kuppusamy Alagesan Paari, Christine Kurian, Anandi Mathur · 2022 · Current Nutrition & Food Science
  94. Dairy Fermentation 2.0
    Τhomas Bintsis · 2024 · Fermentation
  95. High-throughput ecological interaction mapping of dairy microorganisms
    Amadou Ndiaye, Karl Coulombe, Ismaı̈l Fliss, Marie Filteau · 2024 · International Journal of Food Microbiology
  96. Challenge of validation in whole-cell spike-in amplicon sequencing to comprehensively quantify food lactic acid bacteriota
    Mugihito Oshiro, K. Nakamura, Yukihiro Tashiro · 2024 · Bioscience Biotechnology and Biochemistry
  97. Coexistence and extinction in flow-kick systems: An invasion growth rate approach
    Sebastian J. Schreiber · 2025 · Journal of Mathematical Biology
  98. Intérêt des aliments fermentés pour la santé
    Isabelle Savary‐Auzeloux, Françoise Rul · 2021 · Pratiques en nutrition
  99. Association Between Dietary Live Microbe Intake and Chronic Diarrhea and Fecal Incontinence: A Cross-Sectional NHANES 2005–2010 Study
    Liang Ding, Jinnan Duan, Junjie Hou, Tao Yang, Mengping Yuan, A. Huo Ma, Yuehua Qin · 2025 · Journal of the American Nutrition Association
  100. Microbiology of Fermentations
    Carl A. Batt · 2016 · Elsevier eBooks