Cited by 190Genetic Syndromes and ImprintingEpigenetics and DNA MethylationGenetic Associations and Epidemiology

Trim28 Haploinsufficiency Triggers Bi-stable Epigenetic Obesity

Open access
Dalgaard, Kevin, Landgraf, Kathrin, Heyne, Steffen, Lempradl, Adelheid, Longinotto, John, Gossens, Klaus, Ruf, Marius, Orthofer, Michael +22 more·2016·Cell

Abstract

More than one-half billion people are obese, and despite progress in genetic research, much of the heritability of obesity remains enigmatic. Here, we identify a Trim28-dependent network capable of triggering obesity in a non-Mendelian, "on/off" manner. Trim28(+/D9) mutant mice exhibit a bi-modal body-weight distribution, with isogenic animals randomly emerging as either normal or obese and few intermediates. We find that the obese-"on" state is characterized by reduced expression of an imprinted gene network including Nnat, Peg3, Cdkn1c, and Plagl1 and that independent targeting of these alleles recapitulates the stochastic bi-stable disease phenotype. Adipose tissue transcriptome analyses in children indicate that humans too cluster into distinct sub-populations, stratifying according to Trim28 expression, transcriptome organization, and obesity-associated imprinted gene dysregulation. These data provide evidence of discrete polyphenism in mouse and man and thus carry important implications for complex trait genetics, evolution, and medicine.

The claims and statistics of this paper haven’t been checked yet.

Run the check — free, no account needed. It reads the open-access text and checks the sources it cites.

A few free checks a day · papers already verified open instantly · results are public

Integrity signals

Registry

Crossref · 10.1016/j.cell.2015.12.025

Cites

Statistics

Claims the paper makes

The claims and statistics of this paper haven’t been checked yet.

Run the check — free, no account needed. It reads the open-access text and checks the sources it cites.

A few free checks a day · papers already verified open instantly · results are public

Claims other papers make about this one

Each is checked against this paper’s own text: does it say what the citing paper says it does?

  • Inbred laboratory mice raised in standardized conditions display high phenotypic trait variability and are prone to polyphenism.

    “Inbred laboratory mice raised in standardized conditions nevertheless keep displaying high phenotypic trait variability (Gartner, 1990; Tuttle et al, 2018) and are prone to polyphenism, that is, several discrete phenotypes on the same genetic background (Dalgaard et al, 2016; Yang et al, 2022).”

    From An extended transcription factor regulatory network controls hepatocyte identity (2023) · cites this paper as Dalgaard et al, 2016

Self-check

Percentages, sums and reported differences re-computed from the paper’s own numbers.

The self-check needs the paper’s full text.

The citation lists haven’t been fetched yet

References 62 · Cited by 190

Research works printed but not linked: 50

  1. Al Adhami H. Evano B. Le Digarcher A. Gueydan C. Dubois E. Parrinello H. Dantec C. Bouschet T. Varrault A. Journot L. A systems-level approach to parental genomic imprinting: the imprinted gene network includes extracellular matrix genes and regulates cell cycle exit and differentiation Genome Res. 25 2015 353 367 25614607 PMC4352888
  2. Alexiou P. Chatzopoulou M. Pegklidou K. Demopoulos V.J. RAGE: a multi-ligand receptor unveiling novel insights in health and disease Curr. Med. Chem. 17 2010 2232 2252 20459381
  3. Allshire R.C. Javerzat J.-P. Redhead N.J. Cranston G. Position effect variegation at fission yeast centromeres Cell 76 1994 157 169 8287474
  4. Anway M.D. Cupp A.S. Uzumcu M. Skinner M.K. Epigenetic transgenerational actions of endocrine disruptors and male fertility Science 308 2005 1466 1469 15933200 PMC11423801
  5. Ashe A. Sapetschnig A. Weick E.-M. Mitchell J. Bagijn M.P. Cording A.C. Doebley A.-L. Goldstein L.D. Lehrbach N.J. Le Pen J. piRNAs can trigger a multigenerational epigenetic memory in the germline of C. elegans Cell 150 2012 88 99 22738725 PMC3464430
  6. Boucher J. Charalambous M. Zarse K. Mori M.A. Kleinridders A. Ristow M. Ferguson-Smith A.C. Kahn C.R. Insulin and insulin-like growth factor 1 receptors are required for normal expression of imprinted genes Proc. Natl. Acad. Sci. USA 111 2014 14512 14517 25246545 PMC4209990
  7. Brideau C.M. Eilertson K.E. Hagarman J.A. Bustamante C.D. Soloway P.D. Successful computational prediction of novel imprinted genes from epigenomic features Mol. Cell. Biol. 30 2010 3357 3370 20421412 PMC2897571
  8. Carone B.R. Fauquier L. Habib N. Shea J.M. Hart C.E. Li R. Bock C. Li C. Gu H. Zamore P.D. Paternally induced transgenerational environmental reprogramming of metabolic gene expression in mammals Cell 143 2010 1084 1096 21183072 PMC3039484
  9. Cleaton M.A.M. Edwards C.A. Ferguson-Smith A.C. Phenotypic outcomes of imprinted gene models in mice: elucidation of pre- and postnatal functions of imprinted genes Annu. Rev. Genomics Hum. Genet. 15 2014 93 126 24898037
  10. Curley J.P. Pinnock S.B. Dickson S.L. Thresher R. Miyoshi N. Surani M.A. Keverne E.B. Increased body fat in mice with a targeted mutation of the paternally expressed imprinted gene Peg3 FASEB J. 19 2005 1302 1304 15928196
  11. Daxinger L. Whitelaw E. Understanding transgenerational epigenetic inheritance via the gametes in mammals Nat. Rev. Genet. 13 2012 153 162 22290458
  12. Daxinger L. Harten S.K. Oey H. Epp T. Isbel L. Huang E. Whitelaw N. Apedaile A. Sorolla A. Yong J. An ENU mutagenesis screen identifies novel and known genes involved in epigenetic processes in the mouse Genome Biol. 14 2013 R96 24025402 PMC4053835
  13. Gabory A. Ripoche M.-A. Le Digarcher A. Watrin F. Ziyyat A. Forné T. Jammes H. Ainscough J.F.X. Surani M.A. Journot L. Dandolo L. H19 acts as a trans regulator of the imprinted gene network controlling growth in mice Development 136 2009 3413 3421 19762426
  14. Gapp K. Jawaid A. Sarkies P. Bohacek J. Pelczar P. Prados J. Farinelli L. Miska E. Mansuy I.M. Implication of sperm RNAs in transgenerational inheritance of the effects of early trauma in mice Nat. Neurosci. 17 2014 667 669 24728267 PMC4333222
  15. Greer E.L. Maures T.J. Ucar D. Hauswirth A.G. Mancini E. Lim J.P. Benayoun B.A. Shi Y. Brunet A. Transgenerational epigenetic inheritance of longevity in Caenorhabditis elegans Nature 479 2011 365 371 22012258 PMC3368121
  16. Gregor M.F. Misch E.S. Yang L. Hummasti S. Inouye K.E. Lee A.-H. Bierie B. Hotamisligil G.S. The role of adipocyte XBP1 in metabolic regulation during lactation Cell Rep. 3 2013 1430 1439 23623498 PMC3724425
  17. Herquel B. Ouararhni K. Khetchoumian K. Ignat M. Teletin M. Mark M. Béchade G. Van Dorsselaer A. Sanglier-Cianférani S. Hamiche A. Transcription cofactors TRIM24, TRIM28, and TRIM33 associate to form regulatory complexes that suppress murine hepatocellular carcinoma Proc. Natl. Acad. Sci. USA 108 2011 8212 8217 21531907 PMC3100982
  18. Hollick J.B. Chandler V.L. Genetic factors required to maintain repression of a paramutagenic maize pl1 allele Genetics 157 2001 369 378 11139517 PMC1461487
  19. Jais A. Einwallner E. Sharif O. Gossens K. Lu T.T.-H. Soyal S.M. Medgyesi D. Neureiter D. Paier-Pourani J. Dalgaard K. Heme oxygenase-1 drives metaflammation and insulin resistance in mouse and man Cell 158 2014 25 40 24995976 PMC5749244
  20. Jakobsson J. Cordero M.I. Bisaz R. Groner A.C. Busskamp V. Bensadoun J.-C. Cammas F. Losson R. Mansuy I.M. Sandi C. Trono D. KAP1-mediated epigenetic repression in the forebrain modulates behavioral vulnerability to stress Neuron 60 2008 818 831 19081377
  21. Kamiya M. Judson H. Okazaki Y. Kusakabe M. Muramatsu M. Takada S. Takagi N. Arima T. Wake N. Kamimura K. The cell cycle control gene ZAC/PLAGL1 is imprinted—a strong candidate gene for transient neonatal diabetes Hum. Mol. Genet. 9 2000 453 460 10655556
  22. Kiani J. Grandjean V. Liebers R. Tuorto F. Ghanbarian H. Lyko F. Cuzin F. Rassoulzadegan M. RNA-mediated epigenetic heredity requires the cytosine methyltransferase Dnmt2 PLoS Genet. 9 2013 e1003498 23717211 PMC3662642
  23. Koza R.A. Nikonova L. Hogan J. Rim J.-S. Mendoza T. Faulk C. Skaf J. Kozak L.P. Changes in gene expression foreshadow diet-induced obesity in genetically identical mice PLoS Genet. 2 2006 e81 16733553 PMC1464831
  24. Körner A. Kratzsch J. Gausche R. Schaab M. Erbs S. Kiess W. New predictors of the metabolic syndrome in children—role of adipocytokines Pediatr. Res. 61 2007 640 645 17426657
  25. Landgraf K. Rockstroh D. Wagner I.V. Weise S. Tauscher R. Schwartze J.T. Löffler D. Bühligen U. Wojan M. Till H. Evidence of early alterations in adipose tissue biology and function and its association with obesity-related inflammation and insulin resistance in children Diabetes 64 2015 1249 1261 25392242
  26. Lee H.-C. Gu W. Shirayama M. Youngman E. Conte D. Jr. Mello C.C.C. C. elegans piRNAs mediate the genome-wide surveillance of germline transcripts Cell 150 2012 78 87 22738724 PMC3410639
  27. Messerschmidt D.M. de Vries W. Ito M. Solter D. Ferguson-Smith A. Knowles B.B. Trim28 is required for epigenetic stability during mouse oocyte to embryo transition Science 335 2012 1499 1502 22442485
  28. Moon Y.S. Smas C.M. Lee K. Villena J.A. Kim K.-H. Yun E.J. Sul H.S. Mice lacking paternally expressed Pref-1/Dlk1 display growth retardation and accelerated adiposity Mol. Cell. Biol. 22 2002 5585 5592 12101250 PMC133956
  29. Morita S. Horii T. Kimura M. Arai Y. Kamei Y. Ogawa Y. Hatada I. Paternal allele influences high fat diet-induced obesity PLoS ONE 9 2014 e85477 24416415 PMC3885714
  30. Naumova N. Dekker J. Integrating one-dimensional and three-dimensional maps of genomes J. Cell Sci. 123 2010 1979 1988 20519580 PMC2880011
  31. O’Riain M.J. Jarvis J.U. Faulkes C.G. A dispersive morph in the naked mole-rat Nature 380 1996 619 621 8602260
  32. Patti M.-E. Intergenerational programming of metabolic disease: evidence from human populations and experimental animal models Cell. Mol. Life Sci. 70 2013 1597 1608 23435955 PMC3625497
  33. Pietiläinen K.H. Naukkarinen J. Rissanen A. Saharinen J. Ellonen P. Keränen H. Suomalainen A. Götz A. Suortti T. Yki-Järvinen H. Global transcript profiles of fat in monozygotic twins discordant for BMI: pathways behind acquired obesity PLoS Med. 5 2008 e51 18336063 PMC2265758
  34. Pospisilik J.A. Schramek D. Schnidar H. Cronin S.J.F. Nehme N.T. Zhang X. Knauf C. Cani P.D. Aumayr K. Todoric J. Drosophila genome-wide obesity screen reveals hedgehog as a determinant of brown versus white adipose cell fate Cell 140 2010 148 160 20074523
  35. Radford E.J. Ito M. Shi H. Corish J.A. Yamazawa K. Isganaitis E. Seisenberger S. Hore T.A. Reik W. Erkek S. In utero effects. In utero undernourishment perturbs the adult sperm methylome and intergenerational metabolism Science 345 2014 1255903 25011554 PMC4404520
  36. Rando O.J. Simmons R.A. I’m eating for two: parental dietary effects on offspring metabolism Cell 161 2015 93 105 25815988 PMC4465102
  37. Rassoulzadegan M. Grandjean V. Gounon P. Vincent S. Gillot I. Cuzin F. RNA-mediated non-mendelian inheritance of an epigenetic change in the mouse Nature 441 2006 469 474 16724059
  38. Rechavi O. Houri-Ze’evi L. Anava S. Goh W.S.S. Kerk S.Y. Hannon G.J. Hobert O. Starvation-induced transgenerational inheritance of small RNAs in C. elegans Cell 158 2014 277 287 25018105 PMC4377509
  39. Rowe H.M. Jakobsson J. Mesnard D. Rougemont J. Reynard S. Aktas T. Maillard P.V. Layard-Liesching H. Verp S. Marquis J. KAP1 controls endogenous retroviruses in embryonic stem cells Nature 463 2010 237 240 20075919
  40. Sekita Y. Wagatsuma H. Nakamura K. Ono R. Kagami M. Wakisaka N. Hino T. Suzuki-Migishima R. Kohda T. Ogura A. Role of retrotransposon-derived imprinted gene, Rtl1, in the feto-maternal interface of mouse placenta Nat. Genet. 40 2008 243 248 18176565
  41. Seong K.-H. Li D. Shimizu H. Nakamura R. Ishii S. Inheritance of stress-induced, ATF-2-dependent epigenetic change Cell 145 2011 1049 1061 21703449
  42. Shirayama M. Seth M. Lee H.-C. Gu W. Ishidate T. Conte D. Jr. Mello C.C. piRNAs initiate an epigenetic memory of nonself RNA in the C. elegans germline Cell 150 2012 65 77 22738726 PMC3597741
  43. Simpson S.J. Sword G.A. Lo N. Polyphenism in insects Curr. Biol. 21 2011 R738 R749 21959164
  44. Teperino R. Amann S. Bayer M. McGee S.L. Loipetzberger A. Connor T. Jaeger C. Kammerer B. Winter L. Wiche G. Hedgehog partial agonism drives Warburg-like metabolism in muscle and brown fat Cell 151 2012 414 426 23063129
  45. Varrault A. Gueydan C. Delalbre A. Bellmann A. Houssami S. Aknin C. Severac D. Chotard L. Kahli M. Le Digarcher A. Zac1 regulates an imprinted gene network critically involved in the control of embryonic growth Dev. Cell 11 2006 711 722 17084362
  46. Vrang N. Meyre D. Froguel P. Jelsing J. Tang-Christensen M. Vatin V. Mikkelsen J.D. Thirstrup K. Larsen L.K. Cullberg K.B. The imprinted gene neuronatin is regulated by metabolic status and associated with obesity Obesity (Silver Spring) 18 2010 1289 1296 19851307 PMC2921166
  47. Waterland R.A. Dolinoy D.C. Lin J.-R. Smith C.A. Shi X. Tahiliani K.G. Maternal methyl supplements increase offspring DNA methylation at Axin Fused Genesis 44 2006 401 406 16868943
  48. Whitelaw N.C. Chong S. Morgan D.K. Nestor C. Bruxner T.J. Ashe A. Lambley E. Meehan R. Whitelaw E. Reduced levels of two modifiers of epigenetic gene silencing, Dnmt3a and Trim28, cause increased phenotypic noise Genome Biol. 11 2010 R111 21092094 PMC3156950
  49. Wolff G.L. Kodell R.L. Moore S.R. Cooney C.A. Maternal epigenetics and methyl supplements affect agouti gene expression in Avy/a mice FASEB J. 12 1998 949 957 9707167
  50. Yang J. Loos R.J.F. Powell J.E. Medland S.E. Speliotes E.K. Chasman D.I. Rose L.M. Thorleifsson G. Steinthorsdottir V. Mägi R. FTO genotype is associated with phenotypic variability of body mass index Nature 490 2012 267 272 22982992 PMC3564953

Authors
Dalgaard, K., Landgraf, K., Heyne, S., Lempradl, A., Longinotto, J., Gossens, K., Ruf, M., Orthofer, M., Strogantsev, R., Selvaraj, M., Lu, T. T.-H., Casas, E., Teperino, R., Surani, M. A., Zvetkova, I., Rimmington, D., Tung, Y. C. L., Lam, B., Larder, R., Yeo, G. S. H., O’Rahilly, S., Vavouri, T., Whitelaw, E., Penninger, J. M., Jenuwein, T., Cheung, C.-L., Ferguson-Smith, A. C., Coll, A. P., Körner, A., & Pospisilik, J. A.
Affiliations
  • Max Planck Institute of Immunobiology and Epigenetics (DE)
  • University Hospital Leipzig (DE)
  • Institute of Molecular Biotechnology (AT)
  • University of Cambridge (GB)
  • Josep Carreras Leukaemia Research Institute (ES)
  • Wellcome/MRC Cambridge Stem Cell Institute (GB)
  • La Trobe University (AU)
  • University of Hong Kong (HK)
Corresponding author
Pospisilik, J. Andrew
Venue
Cell
Publisher
Elsevier BV
Published
2016-01
Volume
164
Issue
3
Pages
353-364
ISSN
0092-8674 (ISSN-L)
OpenAlex
W2254116509
Cited by
190
References
62
Citations by year
2026: 8 · 2025: 10 · 2024: 15 · 2023: 12 · 2022: 14 · 2021: 15 · 2020: 22 · 2019: 17 · 2018: 27 · 2017: 21 · 2016: 28
FWCI
25.04
Type
journal article
Language
en
Open access
Locations
  • Cell (publishedVersion, cc-by)
  • Europe PMC (PubMed Central) (publishedVersion, cc-by)
  • PubMed Central (publishedVersion, cc-by)
  • PubMed (publishedVersion)
  • PuSH - Publication Server of Helmholtz Zentrum München (submittedVersion, cc-by)
  • The HKU Scholars Hub (University of Hong Kong) (submittedVersion, cc-by-nc-nd)
  • MPG.PuRe (Max Planck Society) (submittedVersion, other-oa)
  • Apollo (University of Cambridge) (submittedVersion, cc-by)
Funders
  • Deutsche Forschungsgemeinschaft (CRC1052/1 C05, SFB 1052, SFB992)
  • Max-Planck-Gesellschaft (ERC-StG-281641)
  • Bundesministerium für Bildung und Forschung (01EO1001)
  • Connecticut Department of Energy and Environmental Protection (MRC_MC_UU_12012/1)
  • Wellcome Trust
  • Institut Français de Bioinformatique
Topics
  • Life Sciences › Biochemistry, Genetics and Molecular Biology › Genetics › Genetic Syndromes and Imprinting
  • Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › Epigenetics and DNA Methylation
  • Life Sciences › Biochemistry, Genetics and Molecular Biology › Genetics › Genetic Associations and Epidemiology
Keywords
TRIM28, haploinsufficiency, obesity, genomic imprinting, neuronatin, Peg3, CDKN1C, PLAGL1, adipose tissue transcriptome, polyphenism, heritability of obesity
MeSH terms
Tripartite Motif-Containing Protein 28, Adolescent, Animals, Child, Child, Preschool, Humans, Nuclear Proteins, Nutrition Surveys, Obesity, Polymorphism, Genetic, Repressor Proteins, Thinness, Body Mass Index, Epigenesis, Genetic, Mice, Haploinsufficiency

About these checks

Registry, retraction, Cites and statistics results are computed, not judged, with one exception: a printed reference that no index lists is read once by a model before it counts as a citation error. Claims are extracted by a model and kept only when their quote appears verbatim in the text; each cited source is then checked, with a model’s help, for whether it says what the claim relies on. Those verdicts can be wrong — read the claim’s quote and the cited source before relying on one.

Statistics and arithmetic are recomputed, not judged.

Confidence bands are shown only for fields calibrated on our annotated test set. None is calibrated yet, so no band is shown.

What counts as a claim ›How we measure confidence ›How we check this ›

Are you an author, or do you see a problem with this page? Request a review