Perspective on Oncogenic Processes at the End of the Beginning of Cancer Genomics
Ding, Li, Bailey, Matthew H., Porta-Pardo, Eduard, Thorsson, Vesteinn, Colaprico, Antonio, Bertrand, Denis, Gibbs, David L., Weerasinghe, Amila +751 more·2018·Cell
Cited by (416)
Items 201–300 of 416
- PertInInt: An Integrative, Analytical Approach to Rapidly Uncover Cancer Driver Genes with Perturbed Interactions and FunctionalitiesShilpa N. Kobren, Bernard Chazelle, Mona Singh · 2020 · Cell Systems
- Towards functional maps of non-coding variants in cancerYihan Wang, Gary C. Hon · 2024 · Frontiers in Genome Editing
- Discovering novel driver mutations from pan-cancer analysis of mutational and gene expression profilesHouriiyah Tegally, Kevin H. Kensler, Zahra Mungloo-Dilmohamud, Anisah W. Ghoorah, Timothy Richard Rebbeck, Shakuntala Baichoo · 2020 · PLoS ONE
- Identification of molecular biomarkers associated with non-small-cell lung carcinoma (NSCLC) using whole-exome sequencingVarsha Singh, Amit Katiyar, Prabhat Singh Malik, Sunil Kumar, Anant Mohan, Harpreet Singh, Deepali Jain · 2023 · Cancer Biomarkers
- Reproducibility and Crossplatform Validation of Reverse-Phase Protein Array DataAdam Byron · 2019 · Advances in experimental medicine and biology
- Computational Approaches for Cancer-Fighting: From Gene Expression to Functional FoodsFrancesco Monticolo, Maria Luisa Chiusano · 2021 · Cancers
- Non-cancer-related pathogenic germline variants and expression consequences in ten-thousand cancer genomesZishan Wang, Xiao Fan, Yufeng Shen, Meghana S. Pagadala, Rebecca H. Signer, Kamil J. Cygan, William Guy Fairbrother, Hannah K. Carter, Wendy K. Chung, Kuan‐lin Huang · 2021 · Genome Medicine
- Role of Chromatin Modifying Complexes and Therapeutic Opportunities in Bladder CancerKhyati A. Meghani, Lauren Folgosa Cooley, Andrea Piunti, Joshua J. Meeks · 2022 · Bladder Cancer
- G-Quadruplex Matters in Tissue-Specific Tumorigenesis by BRCA1 DeficiencySanghyun Kim, Sohyun Hwang · 2022 · Genes
- Impact of artificial intelligence on healthcareJoyal Francis, Jithun V. Varghese, Arppana Thomas · 2023 · International Journal of Advances in Medicine
- Proteomics and Precision MedicineChen Ding, Zhaoyu Qin, Yan Li, Wenhao Shi, Lingling Li, Dongdong Zhan, Wenjun Yang · 2019 · Small Methods
- Strategies for Functional Interrogation of Big Cancer Data Using Drosophila Cancer ModelsErdem Bangi · 2020 · International Journal of Molecular Sciences
- Spatial Epitope Barcoding Reveals Subclonal Tumor Patch BehaviorsXavier Rovira Clavé, Alexandros P. Drainas, Sizun Jiang, Yunhao Bai, Maya Baron, Bokai Zhu, Maxim Markovic, Garry L. Coles, Michael Cory Bassik, Julien Sage et al. · 2021 · bioRxiv (Cold Spring Harbor Laboratory)
- Oncogenic Control of MetabolismNatalya N. Pavlova, Craig B. Thompson · 2024 · Cold Spring Harbor Perspectives in Medicine
- R -2-hydroxyglutarate-mediated inhibition of KDM4A compromises telomere integrityFlorence Couteau, Laurence M. Gagné, Karine Boulay, Philippe Rousseau, Mélissa Carbonneau, Mary E. McQuaid, Jyoti Nanda Sharma, Christina Sawchyn, Erlinda Fernández, Dagmar Glatz et al. · 2025 · Nucleic Acids Research
- High mobility group protein 2 (HMGA2) is highly expressed in a broad range of benign and malignant tumorsViktoria Chirico, Fatih Baybars Ergüven, Katharina Möller, Florian Lutz, Florian Viehweger, Martina Kluth, Claudia Hube‐Magg, Christian Bernreuther, Guido Sauter, Andreas Holger Marx et al. · 2025 · Archiv für Pathologische Anatomie und Physiologie und für Klinische Medicin
- Pan-cancer, multi-omic correlates of survival transcending tumor lineage across 11,019 patients reveal targets and pathwaysYiqun Zhang, Fengju Chen, Chad J. Creighton · 2025 · npj Precision Oncology
- BCOR::CREBBP fusion in malignant neuroepithelial tumor of CNS expands the spectrum of methylation class CNS tumor with BCOR/BCOR(L1)-fusionAzadeh Ebrahimi, Andreas Waha, Jens Schittenhelm, Georg Gohla, Martin U. Schuhmann, Torsten Pietsch · 2024 · Acta Neuropathologica Communications
- Antithetical impacts of deleterious LRP1B mutations in non-squamous and squamous NSCLCs on predicting benefits from immune checkpoint inhibitor alone or with chemotherapy over chemotherapy alone: retrospective analyses of the POPLAR/OAK and CHOICE-01 trialsJinliang Wang, Wenyong Zhou, Yu Xu, Jianchun Duan, Qiaoxia Zhou, Guoqiang Wang, Leo Li, Chunwei Xu, Wenxian Wang, Shangli Cai et al. · 2024 · Science China Life Sciences
- MMR Deficiency Defines Distinct Molecular Subtype of Breast Cancer with Histone Proteomic NetworksSean M. Hacking, Charissa J. Chou, Yiğit Baykara, Yihong Wang, Alper Uzun, Ece Dilber Gamsiz Uzun · 2023 · International Journal of Molecular Sciences
- Unraveling the Drivers of Tumorigenesis in the Context of Evolution: Theoretical Models and Bioinformatics ToolsXunuo Zhu, Wenyi Zhao, Zhan Mei Zhou, Xun Gu · 2023 · Journal of Molecular Evolution
- HARNESSING THE POWER OF AI AND MACHINE LEARNING FOR NEXT-GENERATION SEQUENCING DATA ANALYSIS: A COMPREHENSIVE REVIEW OF APPLICATIONS, CHALLENGES, AND FUTURE DIRECTIONS IN PRECISION ONCOLOGYPedro Henrique Zeraik Viduedo, Victor César Urquiza Candeia, Victor Balceiro Legname Martins, Afrânio Côgo Destêfani, Vinícius Côgo Destefani · 2024 · Revista Ibero-Americana de Humanidades, Ciências e Educação
- Systematic identification of novel cancer genes through analysis of deep shRNA perturbation screensHesam Montazeri, Mairene Coto‐Llerena, Gaia Bianco, Ehsan Zangene, Stephanie Taha‐Mehlitz, Viola Paradiso, Sumana Srivatsa, Antoine de Weck, Guglielmo Roma, Manuela Lanzafame et al. · 2021 · Nucleic Acids Research
- Identification of prognostic values defined by copy number variation, mRNA and protein expression of LANCL2 and EGFR in glioblastoma patientsHua Zhao, Xiuming Zhou, Jing Wang, Fanfan Chen, Chang-Peng Wu, Peng‐yu Diao, Lin-rong Cai, Lei Chen, Yanwen Xu, Jing Liu et al. · 2021 · Journal of Translational Medicine
- The landscape of interactions between cancer polygenic risk scores and somatic alterations in cancer cellsEduard Porta‐Pardo, Rosalyn W. Sayaman, Elad Ziv, Alfonso Valencia · 2020 · bioRxiv (Cold Spring Harbor Laboratory)
- Multi-omics driven computational framework for cancer molecular subtype classificationAhtisham Fazeel Abbasi, Muhammad Sajjad, Muhammad Nabeel Asim, Sebastian Vollmer, Andreas R. Dengel · 2025 · Scientific Reports
- Dysbindin Domain-Containing 1 in Prostate Cancer: New Insights into Bioinformatic Validation of Molecular and Immunological FeaturesVan Thi Ngoc Tram, Hoang Dang Khoa Ta, Gangga Anuraga, Phan Vu Thuy Dung, Do Thi Minh Xuan, Sanskriti Dey, Chih‐Yang Wang, Yen‐Nien Liu · 2023 · International Journal of Molecular Sciences
- Systematic pan-cancer analysis of RNF186 with potential implications in progression and prognosis in human cancerYe Hu, Nina Jiang, Xueqing Wang, Xiao Wu, Jinsuo Bo, Yining Chen, Yiyan Zeng, Xiaofan Wei, Hongquan Zhang, Man Li · 2023 · Life Sciences
- Exploring racial disparities in bladder urothelial cancer: insights into survival and genetic variationsSharafudeen Dahiru Abubakar, Zakariyya Muhammad Bello, Sufiyanu Sani Gusau, Imam Malik Kabir · 2024 · African Journal of Urology
- Deciphering the Effects of the PYCR Family on Cell Function, Prognostic Value, Immune Infiltration in ccRCC and Pan-CancerHongquan Chen, Qing Chen, Jinyang Chen, Yazhen Mao, Lidi Duan, Dongjie Ye, Wenxiu Cheng, Jiaxi Chen, Xinrong Gao, Renxi Lin et al. · 2024 · International Journal of Molecular Sciences
- Multi-omics peripheral and core regions of cancerBingbo Wang, Xianan Dong, Jie Hu, Lin Gao · 2022 · npj Systems Biology and Applications
- Activation of E3 ubiquitin ligase WWP2 by non‐receptor tyrosine kinase ACK1Jun Zhu, Ziluo Peng, Xianyan Tian, Tiantian Wu, Aiqin Sun, Wannian Yang, Qiong Lin · 2023 · IUBMB Life
- Pan-Cancer Pharmacogenetics: Targeted Sequencing Panels or Exome Sequencing?Laurentijn Tilleman, Björn Heindryckx, Dieter L. D. Deforce, Filip Van Nieuwerburgh · 2020 · Pharmacogenomics
- Unified views on variant impact across many diseasesSushant Kumar, Mark Gerstein · 2023 · Trends in Genetics
- Global Alliance for Genomics and Health Meets Bioconductor: Toward Reproducible and Agile Cancer Genomics at Cloud ScaleVincent J. Carey, Marcel Ramos, Benjamin J. Stubbs, Shweta Gopaulakrishnan, Sehyun Oh, Nitesh Turaga, Levi Waldron, Martin T. Morgan · 2020 · JCO Clinical Cancer Informatics
- Genetic characterisation of adult primary pleomorphic uterine rhabdomyosarcoma and comparison with uterine carcinosarcomaCharles W. Ashley, Arnaud Da Cruz Paula, Lorenzo Ferrando, Rodrigo Gularte‐Mérida, Ana Paula Martins Sebastião, David N. Brown, Andrea M. Gazzo, Fresia G. Pareja, Anthe A. Stylianou, Nadeem R. Abu‐Rustum et al. · 2021 · Histopathology
- Bioinformatic reanalysis of public proteomics data reveals that nuclear proteins are recurrent in cancer secretomesJuliana de Morais, André Zelanis · 2021 · Traffic
- OnkoRiskNET: a multicenter, interdisciplinary, telemedicine-based model to improve care for patients with a genetic tumor risk syndromeJohanna Tecklenburg, Beate Vajen, Susanne Morlot, Petra Anders, Paula Memenga, Elena Link, Eva Baumann, Sarah Wölffling, Evelin Schröck, Anke Katharina Bergmann et al. · 2022 · BMC Health Services Research
- Early contribution of germline and nevi genetic alterations to a rapidly-progressing cutaneous melanoma patient: a case reportAna Mordoh, Juan Carlos Triviño Pardo, Ibel Carri, María Marcela Barrio, José Mordoh, Mariana Aris · 2023 · BMC Medical Genomics
- Recent Approaches Encompassing the Phenotypic Cell Heterogeneity for Anticancer Drug Efficacy EvaluationAurimas Stulpinas, Aušra Imbrasaitė, Natalija Krestnikova, Audronė Valerija Kalvelytė · 2020 · IntechOpen eBooks
- Integrating germline and somatic genetics to identify genes associated with lung cancerJack W. Pattee, Xiaowei Zhan, Guanghua Xiao, Wei Pan · 2019 · Genetic Epidemiology
- Role of Bclaf1 in Promoting Adrenocortical Carcinoma Proliferation: A Study Combining the Use of Bioinformatics and Molecular EventsHui Zhou, Mengchen Zou, Xinyi Ding, Fei Zou · 2021 · Cancer Management and Research
- dN/dS-H, a New Test to Distinguish Different Selection Modes in Protein Evolution and Cancer EvolutionXun Gu · 2022 · Journal of Molecular Evolution
- Machine Learning and Bioinformatics Analysis for Laboratory Data in Pan‐Cancers DetectionYin Hua Jia, Zixin Liu, Jie Fang Guo, Chengwen He, Xinru Zhou, Miao Xue, Tian Nie, Tingting Sun, Jinsong Kang, Qiong Lu et al. · 2023 · Advanced Intelligent Systems
- Transcriptional profiles reveal histologic origin and prognosis across 33 The Cancer Genome Atlas tumor typesHui Xiao, Liang Hu, Qi Tan, Jinping Jia, Ping Xie, Junai Li, Minghua Wang · 2023 · Translational Cancer Research
- A multiomics approach reveals RNA dynamics promote cellular sensitivity to DNA hypomethylationGe, Alex Y., Arab, Abolfazl, Dai, Raymond, Navickas, Albertas, Fish, Lisa, Garcia, Kristle, Asgharian, Hosseinali, Goudreau, Jackson, Lee, Sean, Keenan, Kathryn et al. · 2024 · Scientific Reports
- Role of Artificial Intelligence in Nanomedicine and Organ-specific Therapy: An Updated ReviewKuldeep Rajpoot · 2025 · Current Drug Targets
- Aberrant methylation limits antitumoral inflammation in lung adenocarcinoma by restricting RIPK3 expressionDeepti Agrawal, Katarina Vizar Cisarova, Sebastian Vosberg, F. Allmendinger, Enkhtsetseg Munkhbaatar, Nadia Dandachi, Francisco José Fernández Hernández, Marta Tonietto, Vanessa Jäger, M Anton et al. · 2026 · Science Advances
- Priority European strategies for sustainable access to high-quality genetic counselling in cancer: A Delphi studyJ. Matt McCrary, Els Van Valckenborgh, Denis Horgan, Evgenia Aleksandrova, Ralf Christian Bargou, Regina Lohajova Behulova, Ivica Belina, Ann Liza Egesberg Bøhme, Joan Brunet, Florin Burada et al. · 2026 · European Journal of Human Genetics
- Precision oncology in gynecologic cancers: molecular taxonomy, biomarker-guided therapeutics, and the challenge of therapeutic resistanceShanza Waseem, Jun Zhan, Xue Xiao, Peng Bai · 2026 · Frontiers in Oncology
- Luminal B Breast Cancer Coexpressingp62andALDH1A3Is Less Susceptible to RadiotherapyAyaka Ozaki, AKARI MATSUDA, Yuki Maemura, Yuna Tada, Takahiro Kasai, Yuka Nagashima, Chotaro Onaga, Yasushi Hara, Kazuki Kitabatake, Mitsutoshi Tsukimoto et al. · 2023 · Anticancer Research
- Aberrations of DNA methylation in cancerМаксимова Варвара Павловна, Olga Usalka, Julia Makus, Valeriia G. Popova, Ekaterina Trapeznikova, Guzel Khayrieva, Guzel R. Sagitova, Жидкова Екатерина Михайловна, A. Yu. Bukina, Якубовская Марианна Геннадиевна et al. · 2022 · Advances in molecular oncology
- Immune landscape and heterogeneity of cervical squamous cell carcinoma and adenocarcinomaBinghan Liu, Yashi Xu, Bai Hu, Xiaole Song, Shitong Lin, Jiaxuan Wang, Lingfang Wang, Tian Chu, Ting Peng, Miaochun Xu et al. · 2024 · Aging
- A comprehensive analysis of clinical and polygenic germline influences on somatic mutational burdenKodi Taraszka, Stefan Groha, David King, Robert W. Tell, Kevin P. White, Elad Ziv, Noah Zaitlen, Alexander Gusev · 2024 · The American Journal of Human Genetics
- Integrating bioinformatics and machine learning to identify AhR-related gene signatures for prognosis and tumor microenvironment modulation in melanomaQianru Li, Heli Li · 2025 · Frontiers in Immunology
- MUC1 and MUC4 expression are inversely correlated and trigger immunological response and transport pathways in adult-type diffuse gliomasGabriel Cardoso Machado, Valéria Pereira Ferrer · 2025 · Computers in Biology and Medicine
- Genomic Signatures of Recurrence After Resection of Early-Stage Node-Negative Colon CancerDaniel Aryeh Metzger, Benjamin C. Greenspun, Julianna Brouwer, Ying Li, Alessio Pigazzi, Despina Siolas, Mehraneh Dorna Jafari · 2025 · Annals of Surgical Oncology
- Specific oncogene activation of the cell of origin in mucosal melanomaSwathy Babu, Jiajia Chen, Chloé S. Baron, Kaiwen Sun, Emily J. Robitschek, Alicia M. McConnell, Constance Wu, Aikaterini Dedeilia, Moshe Sade-Feldman, Rodsy Modhurima et al. · 2025 · Nature Communications
- Constructing and Visualizing Models using Mime-based Machine-learning FrameworkH. B. Liu, Wei Zhang, Yihao Zhang, Xuejun Li, Siyi Wanggou · 2025 · Journal of Visualized Experiments
- Overexpression of the PPAR‑γ protein in primary Ta/T1 non‑muscle‑invasive urothelial carcinomaShinichi S. Tanaka, Yasunori Tokuhara, Sho Hosokawa, Hiroyuki Ohsaki, Tatsuya Morinishi, Tamami Yamamoto, Norihiro Teramoto, Eiichiro Hirakawa · 2021 · Molecular and Clinical Oncology
- Angiopoietin-Like Protein 2 Expression in Tumor Cells Supports Tumor-Associated Macrophage-Induced Tumor Progression in Esophageal CancerTaichi Horino, Haruki Horiguchi, Shinsei Yumoto, Tsuyoshi Kadomatsu, Yoshihiro Hara, Taisuke Yagi, Yoshifumi Baba, Yuji Miyamoto, Hideo Baba, Yuichi Oike · 2024 · Annals of Surgical Oncology
- Proinflammatory Signaling Pathways and Genomic Signatures in Head and Neck CancersZhong Chen, Ramya Viswanathan, Ethan L. Morgan, Jun Jeon, Carter Van Waes · 2021 · Springer eBooks
- A data-driven pan-cancer proteogenomic analysis reveals the characteristics of human cancer protein expressionYing Li, Clementine Xin Liu, Zhen Wang, Qiong Wu, Chulin Sha, Xiaolin Li · 2025 · iScience
- Predicting and interpreting protein and phosphoprotein abundance from pan-cancer and single-cell transcriptomesHui-Mei Tsai, Tzu‐Hung Hsiao, Yu‐Chiao Chiu, Yufei Huang, Eric Y. Chuang, Yidong Chen · 2026 · iScience
- Recurrent ZC3H18 mutations stabilize oncogenic endogenous retroviral RNATanzina Tanu, Anna M. Cox, Jennifer A. Karlow, Priyanka Sharma, Kaiwen Sun, Xueyang He, Swathy Babu, Madeline K. Roelofs, Ethan Jeon, Jiajia Chen et al. · 2026 · Cell Reports
- Ephexin3/ARHGEF5 Together with Cell Migration Signaling Partners within the Tumor Microenvironment Define Prognostic Transcriptional Signatures in Multiple Cancer TypesDante Gustavo Juan-Guadarrama, Yarely Mabell Beltrán‐Navarro, Guadalupe Reyes‐Cruz, José Vázquez‐Prado · 2023 · International Journal of Molecular Sciences
- Computational modeling of aging-related gene networks: a reviewJosé Américo Nabuco Leva Ferreira de Freitas, Oliver Bischof · 2024 · Frontiers in Applied Mathematics and Statistics
- Reframing Cancer as an Immunological Disorder Through Personalized Nutrition and AI IntegrationJoyeta Ghosh, Asmita Roy · 2025 · Advances in computational intelligence and robotics book series
- Mapping cancer gene dynamics through state-specific interactionsAdrian Maqueda Real, Laia Ollé-Monràs, Solip Park · 2025 · Cell Reports
- The Pathology according to p53 PathwayYuichiro Hatano · 2023 · Pathobiology
- Role of artificial intelligence in cancer diagnostics and therapeuticsRahul Soloman Singh, Gladson David Masih, Rupa Joshi, Saurabh Sharma, Ashutosh Kumar Singh, Bikash Medhi · 2024 · Elsevier eBooks
- Personalized prediction of anticancer potential of non-oncology drugs through learning from genome derived molecular pathwaysXiaobao Dong, Huanhuan Liu, Ting Tong, Liuxing Wu, Jianhua Wang, Tianyi You, Yongjian Wei, Xianfu Yi, Hongxi Yang, Jie Hu et al. · 2025 · npj Precision Oncology
- Reproducible processing of TCGA regulatory networksViola Fanfani, Katherine Hoff Shutta, Panagiotis Mandros, Jonas Fischer, Enakshi Saha, Soel Micheletti, Chen Chen, Marouen Ben Guebila, Camila M. Lopes‐Ramos, John F Quackenbush · 2025 · GigaScience
- A protein‐centric approach for exome variant aggregation enables sensitive association analysis with clinical outcomesGinny Xiaohe Li, Daniel B. Munro, Damian Fermin, Christine Vogel, Hyungwon Choi · 2020 · Human Mutation
- Prediction of breast cancer proteins using molecular descriptors and artificial neural networks: a focus on cancer immunotherapy proteins, metastasis driver proteins, and RNA-binding proteinsAndrés López‐Cortés, Alejandro Cabrera‐Andrade, José M. Vázquez-Naya, Alejandro Pazos, Humberto González‐Díaz, César Paz‐y‐Miño, Santiago Xavier Guerrero, Yunierkis Pérez‐Castillo, Eduardo Tejera, Cristian Robert Munteanu · 2019 · bioRxiv (Cold Spring Harbor Laboratory)
- Development of Integrated Machine Learning and Data Science Approaches for the Prediction of Cancer Mutation and Autonomous Drug Discovery of Anti-Cancer Therapeutic AgentsSteve Agajanian · 2021 · Chapman University Digital Commons (Chapman University)
- Deciphering the effects of PYCR family on cell function, prognostic value, immune infiltration in ccRCC and pan-cancerHongquan Chen, Qing Chen, Jinyang Chen, Yazhen Mao, Lidi Duan, Dongjie Ye, Wenxiu Cheng, Jiaxi Chen, Xinrong Gao, Renxi Lin et al. · 2024 · Research Square
- NGS-based profiling of key cancer genes in Indian triple-negative breast cancer patients reinforces molecular heterogeneity of the diseaseNandiniA Sahasrabuddhe, Aruna Korlimarla, Madhura Kulkarni, Vinay Kusuma, Jyothi S. Prabhu, Santosh Dixit, Chetan Deshmukh, TS Sridhar, Aditya Phatak, Chaitanyananda Koppiker · 2021 · Indian Journal of Cancer
- Chemotherapy enhances HMGA1 secretion through the mutant p53-CK2 axis in pancreatic ductal adenocarcinoma cellsFederica Danzi, Giovanna Butera, Damien Sutton, Matthew D. Perricone, Yushu Hu, Adriana Celesia, Marcello Manfredi, Jessica Brandi, Narges Pourmandi, Noah S. Nelson et al. · 2025 · Cell Death and Disease
- STUB1 (CHIP) – a prognostic marker in cancerSubhajit Karmakar, Mouli Chatterjee, Malini Basu, Mrinal K. Ghosh · 2025 · Molecular Omics
- Chinese pan‐cancer patient genomic characteristics: A comprehensive analysis based on the National Cancer Center–Clinical Diagnostics Knowledgebase real‐world clinical sequencing cohortHong-Rui Li, Shun Wang, Guo-Wei Zhao, Jiang-Tao Li, Xin Li, Bing-Ning Wang, Yi Zhang, Meng-Fei Yao, Lei Guo, Jian-Ming Ying et al. · 2026 · Interdisciplinary Medicine
- Delineation of the Germline and Somatic Mutation Interaction Landscape in Triple-Negative and Non-Triple-Negative Breast CancerJiande Wu, Tarun Karthik Kumar Mamidi, Lu Zhang, Chindo Hicks · 2020 · International Journal of Genomics
- Development and evaluation of INT2GRATE: a platform for comprehensive assessment of the role of germline variants informed by tumor signature profile in Lynch syndromeRaymond A. Isidro, Anu B. Chittenden, McKenzie Walker, Alison Schwartz, Diane Renee Koeller, Connor P. Hayes, Busra Unal, Monica Devi Manam, Ryan M. Buehler, Danielle K. Manning et al. · 2024 · Frontiers in Oncology
- Natural Kinds as Homeorhetic Dynamic SystemsDavide Serpico, Francesco Guala · 2025 · The British Journal for the Philosophy of Science
- Integrative In-Silico Analysis of Retroperitoneal Tumors in Colorectal Surgery: Advancements and ImplicationsWenqing Liu, Weida Chen, M. Tang, Shibo Liu, Haicheng Gao, Chengli Miao · 2025 · Cell Biochemistry and Biophysics
- Elastic Net Models Based on DNA Copy Number Variations Predicts Clinical Features, Expression Signatures, and Mutations in Lung AdenocarcinomaYi Xiang, Xiaohuan Zou, Huaqiu Shi, Xueming Xu, Caixia Wu, Wenjuan Zhong, Jinfeng Wang, Wenting Zhou, Xiaoli Zeng, Miao He et al. · 2021 · Frontiers in Genetics
- Genetic Screening Approaches to Cancer Driver Characterization and Synthetic Lethal Target DiscoveryKristen E. Mengwasser · 2018 · Digital Access to Scholarship at Harvard (DASH) (Harvard University)
- Systematic Identification of Novel Cancer Genes through Analysis of Deep shRNA Perturbation ScreensHesam Montazeri, Mairene Coto‐Llerena, Gaia Bianco, Ehsan Zangene, Stephanie Taha‐Mehlitz, Viola Paradiso, Sumana Srivatsa, Antoine de Weck, Guglielmo Roma, Manuela Lanzafame et al. · 2019 · bioRxiv (Cold Spring Harbor Laboratory)
- Personalized Perturbation Profiles Reveal Concordance between Autism Blood Transcriptome DatasetsJason Laird, Alexandra Maertens · 2021 · bioRxiv (Cold Spring Harbor Laboratory)
- Multimodal genomic markers predict immunotherapy response in the head and neck squamous cell carcinomaGaurav Kumar, Andrew P. South, Joseph Curry, Alban J. Linnenbach, Larry A. Harshyne, Adam Ertel, Paolo M. Fortina, Adam Luginbuhl · 2021 · bioRxiv (Cold Spring Harbor Laboratory)
- Network-guided supervised learning on gene expression using a graph convolutional neural networkHatairat Yingtaweesittikul, Chayaporn Suphavilai · 2021 · bioRxiv (Cold Spring Harbor Laboratory)
- Applications of CRISPRi and CRISPRa in Drug DiscoveryLuke A. Gilbert · 2022 · Wiley eBooks
- Pan-cancer evolution signatures link clonal expansion to dynamic changes in the tumour immune microenvironmentXinyu Yang, Wei Liu, Geoff Macintyre, Peter Van Loo, Florian M. Markowetz, Peter J. Bailey, Ke Yuan · 2023 · bioRxiv (Cold Spring Harbor Laboratory)
- Deciphering the Functional Roles of Individual Cancer Alleles Across Comprehensive Cancer Genomic StudiesJiayan Ma, Stephanie Ting, Bartholomew Tam, Timothy V. Pham, Michael M. Reich, Jill P. Mesirov, Pablo Tamayo, William Kim · 2023 · bioRxiv (Cold Spring Harbor Laboratory)
- Amino acid substitutomics: profiling amino acid substitutions at proteomic scale unveils biological implication and escape mechanism in cancerPeize Zhao, Shengzhi Lai, Shuaijian Dai, Chen Zhou, Ning Li, Weichuan Yu · 2024 · bioRxiv (Cold Spring Harbor Laboratory)
- Recurrent oncogenic ZC3H18 mutations stabilize endogenous retroviral RNATanzina Tanu, Anna M. Cox, Jennifer A. Karlow, Priyanka Sharma, Xueyang He, Constance Wu, Swathy Babu, Jared Brown, Kevin M. Brown, Stephen Jacob Chanock et al. · 2025 · bioRxiv (Cold Spring Harbor Laboratory)
- A generative deep neural network for pan-digestive tract cancer survival analysisLekai Xu, Tianjun Lan, Yiqian Huang, Liansheng Wang, Junqi Lin, Xinpeng Song, Hui Tang, Haotian Cao, Hua Chai · 2025 · BioData Mining
- Exploring the link between low germline mutational load and low breast cancer incidence: Lessons from the Xavante IndiansJosé Rueff, João Conde, Guilherme Castro · 2025 · Translational Oncology
- LOXHD1 is an oncofusion-regulated antigen of ewing sarcomaTatiana Blanchard, Pouya Faridi, Chong Bing Xu, Adham Sean Bear, Reyaz ur Rasool, Grace Huang, Terry Lim, Rochelle Ayala, Khatuna Gabunia, Mei Ji et al. · 2025 · Scientific Reports
- Association of DDR pathway proteins and breast cancer risk in a Pakistani populationAzhar Mehmood, Ishrat Mahjabeen, Simon Huw Reed, Rachel J. Errington, Muhammad Umar, Farrah Pervaiz, Mahmood Akhtar Kayani · 2025 · Future Oncology