A Single-Cell Atlas of In Vivo Mammalian Chromatin Accessibility
Cusanovich, Darren A., Hill, Andrew J., Aghamirzaie, Delasa, Daza, Riza M., Pliner, Hannah A., Berletch, Joel B., Filippova, Galina N., Huang, Xingfan, Christiansen, Lena, DeWitt, William S., Lee, Choli, Regalado, Samuel G., Read, David F., Steemers, Frank J., Disteche, Christine M., Trapnell, Cole, Shendure, Jay·2018·Cell
Cited by (789)
Items 401–500 of 789
- Decoding the IGF1 signaling gene regulatory network behind alveologenesis from a mouse model of bronchopulmonary dysplasiaFan Gao, Changgong Li, SM Smith, Neil Peinado, GoleNaz Adeli Kohbodi, Evelyn Tran, Yong‐Hwee Eddie Loh, Wei Li, Zea Borok, Parviz Minoo · 2022 · eLife
- AtacAnnoR: a reference-based annotation tool for single cell ATAC-seq dataLejin Tian, Yunxiao Xie, Zhaobin Xie, Jasmine Tian, Weidong Tian · 2023 · Briefings in Bioinformatics
- MOCHA’s advanced statistical modeling of scATAC-seq data enables functional genomic inference in large human cohortsSamir Rachid Zaim, Mark-Phillip Pebworth, Imran McGrath, Lauren Y. Okada, Morgan D. A. Weiss, Julian Reading, Julie Czartoski, Troy R. Torgerson, M. Juliana McElrath, Thomas F. Bumol et al. · 2024 · Nature Communications
- Benchmarking automated cell type annotation tools for single-cell ATAC-seq dataYuge Wang, Xingzhi Sun, Hongyu Zhao · 2022 · Frontiers in Genetics
- scEMAIL: Universal and Source-Free Annotation Method for scRNA-Seq Data with Novel Cell-Type PerceptionHui Song Wan, Liang Chen, Minghua Deng · 2022 · Genomics Proteomics & Bioinformatics
- Breaking enhancers to gain insights into developmental defectsDaniel A. Armendariz, Anjana Sundarrajan, Gary C. Hon · 2023 · eLife
- Principles and methods of integrative chromatin analysis in primary tissues and tumorsPaloma Cejas, Henry W. Long · 2019 · Biochimica et Biophysica Acta (BBA) - Reviews on Cancer
- Single‐cell dynamics of chromatin activity during cell lineage differentiation in Caenorhabditis elegans embryosZhiguang Zhao, Rong Fan, Weina Xu, Yahui Kou, Yangyang Wang, Xuehua Ma, Zhuo Du · 2021 · Molecular Systems Biology
- Are dropout imputation methods for scRNA-seq effective for scATAC-seq data?Yue Liu, Junfeng Zhang, Shulin Wang, Xiangxiang Zeng, Wei Zhang · 2021 · Briefings in Bioinformatics
- Breaking the Immune Complexity of the Tumor Microenvironment Using Single-Cell TechnologiesSimone Caligola, Francesco De Sanctis, Stefania Canè, Stefano Ugel · 2022 · Frontiers in Genetics
- scATACpipe: A nextflow pipeline for comprehensive and reproducible analyses of single cell ATAC-seq dataKai Hu, Haibo Liu, Nathan D. Lawson, Lihua Julie Zhu · 2022 · Frontiers in Cell and Developmental Biology
- Droplet-based combinatorial indexing for massive scale single-cell epigenomicsCaleb A. Lareau, Fabiana M. Duarte, Jennifer G. Chew, Vinay K. Kartha, Zach D. Burkett, Andrew S. Kohlway, Dmitry Pokholok, Martin J. Aryee, Frank J. Steemers, Ronald Lebofsky et al. · 2019 · bioRxiv (Cold Spring Harbor Laboratory)
- Information retrieval in single cell chromatin analysis using TF-IDF transformation methodsMehrdad Zandigohar, Yang David Dai · 2022 · IEEE International Conference on Bioinformatics and Biomedicine (BIBM)
- scCorrector: a robust method for integrating multi-study single-cell dataZhenhao Guo, Yanbin Wang, Siguo Wang, Qinhu Zhang, De-Shuang Huang · 2023 · Briefings in Bioinformatics
- Recent advances in methodologies of epigenomicsHiroaki Ohishi, Wan Kin Au Yeung · 2025 · Epigenomics
- Single-cell biology to decode the immune cellular composition of kidney inflammationYu Zhao, Ulf Panzer, Stefan Bonn, Christian F. Krebs · 2021 · Cell and Tissue Research
- TooManyPeaks identifies drug-resistant-specific regulatory elements from single-cell leukemic epigenomesGregory W. Schwartz, Yeqiao Zhou, Jelena Petrovic, Warren S. Pear, Robert B. Faryabi · 2021 · Cell Reports
- Epigenetic perspectives of COVID-19: Virus infection to disease progression and therapeutic controlSamir Kumar Patra, Moshe Szyf · 2022 · Biochimica et Biophysica Acta (BBA) - Molecular Basis of Disease
- Cellular dynamics of distinct skeletal cells and the development of osteosarcomaShohei Otani, Mizuho Ohnuma, Kosei Ito, Yuki Matsushita · 2023 · Frontiers in Endocrinology
- The use of bioinformatic analysis to study intracerebral hemorrhageГареев Ильгиз Фанилевич, Ozal Beylerli, Tatiana Ilyasova, Машкин Андрей Михайлович, Huaizhang Shi · 2024 · Brain Hemorrhages
- Network diffusion for scalable embedding of massive single-cell ATAC-seq dataKangning Dong, Shihua Zhang · 2021 · 中国科学通报:英文版
- Simultaneous cellular and molecular phenotyping of embryonic mutants using single-cell regulatory trajectoriesStefano Secchia, Mattia Forneris, Tobias Heinen, Oliver Stegle, Eileen E. M. Furlong · 2022 · Developmental Cell
- Epigenetics in cardiovascular health and diseaseNicholas Chew, Shaun Seh Ern Loong, Roger Foo · 2023 · Progress in molecular biology and translational science
- Innovative strategies for annotating the “relationSNP” between variants and molecular phenotypesJason E. Miller, Yogasudha Veturi, Marylyn DeRiggi Ritchie · 2019 · BioData Mining
- Integrative single-cell analysis of cardiogenesis identifies developmental trajectories and non-coding mutations in congenital heart diseaseMohamed Ameen, Laksshman Sundaram, Abhimanyu Banerjee, Mengcheng Shen, Soumya Kundu, Surag Nair, Anna Shcherbina, Mingxia Gu, Kitchener D. Wilson, Avyay Varadarajan et al. · 2022 · bioRxiv (Cold Spring Harbor Laboratory)
- Multi-omic single cell sequencing: Overview and opportunities for kidney disease therapeutic developmentSteven K Pregizer, Thom Vreven, Mohit Mathur, Luke N. Robinson · 2023 · Frontiers in Molecular Biosciences
- A review of single-cell transcriptomics and epigenomics studies in maternal and child healthChang Shu, Kelly Street, Carrie V. Breton, Theresa M. Bastain, Melissa L. Wilson · 2024 · Epigenomics
- Identifying cross-lineage dependencies of cell-type-specific regulators in mouse gastruloidsLuca Braccioli, Teun van den Brand, Noemí Alonso Saiz, Charis Fountas, Patrick H. N. Celie, Justina Kazokaitė-Adomaitienė, Elzo de Wit · 2025 · Developmental Cell
- Unveiling causal regulatory mechanisms through cell-state parallaxAlexander P. Wu, Rohit Singh, Christopher A. Walsh, Bonnie Berger · 2025 · Nature Communications
- The Art of Reprogramming for Regenerative MedicineJunqi Kuang, Tao Huang, Duanqing Pei · 2022 · Frontiers in Cell and Developmental Biology
- TFSyntax: a database of transcription factors binding syntax in mammalian genomesYongbing Zhao · 2022 · Nucleic Acids Research
- Single-cell chromatin accessibility and transcriptomic characterization of Behcet’s diseaseWen Shi, Jinguo Ye, Zhuoxing Shi, Caineng Pan, Qikai Zhang, Yuheng Lin, Dan Liang, Yizhi Liu, Xianchai Lin, Yingfeng Zheng · 2023 · Communications Biology
- scATAC-seq preprocessing and imputation evaluation system for visualization, clustering and digital footprintingPavel Akhtyamov, Layal Shaheen, Mikhail Raevskiy, Alexey Stupnikov, Yulia A. Medvedeva · 2023 · Briefings in Bioinformatics
- scMGCN: A Multi-View Graph Convolutional Network for Cell Type Identification in scRNA-seq DataHongmin Sun, Haowen Qu, Kaifu Duan, Wei Du · 2024 · International Journal of Molecular Sciences
- scMDCL: A Deep Collaborative Contrastive Learning Framework for Matched Single-Cell Multiomics Data ClusteringWenhao Wu, Shudong Wang, Kuijie Zhang, Hengxiao Li, Sibo Qiao, Yuanyuan Zhang, Shanchen Pang · 2025 · Journal of Chemical Information and Modeling
- Single-cell RNA Sequencing: In-depth Decoding of Heart Biology and Cardiovascular DiseasesZhongli Chen, Wei Liang, Fırat Duru, Liang Chen · 2020 · Current Genomics
- Molecular mechanism for the multiple sclerosis risk variant rs17594362Dongkyeong Kim, Yungki Park · 2019 · Human Molecular Genetics
- Saturation mutagenesis of disease-associated regulatory elementsM. Kircher, Chenling Xiong, B. Martin, M. Schubach, Fumitaka Inoue, Robert J. A. Bell, J. Costello, J. Shendure, N. Ahituv · 2018 · bioRxiv (Cold Spring Harbor Laboratory)
- EpiFoundation: A Foundation Model for Single-Cell ATAC-seq via Peak-to-Gene AlignmentJun-Cheng Wu, Changxin Wan, Zhicheng Ji, Yuyin Zhou, Wenpin Hou · 2025 · bioRxiv (Cold Spring Harbor Laboratory)
- Depth-corrected multi-factor dissection of chromatin accessibility for scATAC-seq data with PACSZhen Miao, Jianqiao Wang, Kernyu Park, Da Kuang, Junhyong Kim · 2025 · Nature Communications
- A hierarchical, count-based model highlights challenges in scATAC-seq data analysis and points to opportunities to extract finer-resolution informationAaron Wing Cheung Kwok, Heejung Shim, Davis James McCarthy · 2025 · Genome biology
- Multiscale predictive cellular modeling: integrating hypothesis grammars, digital twins, and multi-omics for In silico oncology and precision theranosticsS.T. Gopukumar, Dyumn Dwivedi, Mohamed Rahamathulla, Mohammed Muqtader Ahmed, Tanveen Kaur Soni, Praveen Ganesh Natarajan, S. Ramkanth, Arpita Mitra, Uddalak Das · 2026 · Functional & Integrative Genomics
- Benchmarking Algorithms for Gene Set Scoring of Single-cell ATAC-seq DataXi Wang, Qiwei Lian, Haoyu Dong, Shuo Xu, Yaru Su, Xiaohui Wu · 2024 · Genomics Proteomics & Bioinformatics
- Single‐cell sequencing: Current applications in various tuberculosis specimen typesYuqin Zeng, Quan Ma, Jinyun Chen, Xingxing Kong, Zhanpeng Chen, Huazhen Liu, Lanlan Liu, Qian Yan, Xiaomin Wang, Shuihua Lu · 2024 · Cell Proliferation
- Modular organization of enhancer network provides transcriptional robustness in mammalian developmentHongli Lin, Xinyun Ye, Wenyan Chen, Danni Hong, Lifang Liu, Feng Chen, Ning Sun, Keying Ye, Jizhou Hong, Yalin Zhang et al. · 2025 · Nucleic Acids Research
- Informing disease modelling with brain-relevant functional genomic annotationsRegina Hertfelder Reynolds, John Hardy, Mina Ryten, Sarah A. Gagliano Taliun · 2019 · Brain
- Heart Enhancers: Development and Disease Control at a DistanceXuefei Yuan, Ian C. Scott, Michael D. Wilson · 2021 · Frontiers in Genetics
- Single-nuclei chromatin profiling of ventral midbrain reveals cell identity transcription factors and cell-type-specific gene regulatory variationYujuan Gui, Kamil Grzyb, Mélanie H. Thomas, Jochen Ohnmacht, Pierre Garcia, Manuel Buttini, Alexander Skupin, Thomas Sauter, Lasse Sinkkonen · 2021 · Epigenetics & Chromatin
- Epigenetic toxicity and cytotoxicity of perfluorooctanoic acid and its effects on gene expression in embryonic mouse hypothalamus cellsHun Kim, Min-Wook Hong, Yun-Ho Bae, Sung‐Jin Lee · 2021 · Archives of Industrial Hygiene and Toxicology
- scAWMV: an adaptively weighted multi-view learning framework for the integrative analysis of parallel scRNA-seq and scATAC-seq dataPengcheng Zeng, Yuanyuan Ma, Zhixiang Lin · 2022 · Bioinformatics
- Single Cell TranscriptomicsYoshiharu Muto, Haikuo Li, Benjamin D. Humphreys · 2022 · Springer eBooks
- scENT for Revealing Gene Clusters From Single-Cell RNA-Seq DataFan Rao, Minghan Chen, Defu Yang, Bess Morrell, Qianqian Song, Wentao Zhu · 2023 · IEEE Transactions on Computational Biology and Bioinformatics
- Role of Coactivator Associated Arginine Methyltransferase 1 (CARM1) in the Regulation of the Biological Function of 1,25-Dihydroxyvitamin D3Leila Jean Mady, Yan Zhong, Puneet Dhawan, Sylvia Christakos · 2023 · Cells
- scENCORE: leveraging single-cell epigenetic data to predict chromatin conformation using graph embeddingZiheng Duan, Siwei Xu, Shushrruth Sai Srinivasan, Ahyeon Hwang, Che-Yu Lee, Feng Yue, Mark Gerstein, Yu Luan, Matthew J. Girgenti, Jing Zhang · 2024 · Briefings in Bioinformatics
- An upstream enhancer regulates Gpihbp1 expression in a tissue-specific mannerChristopher M. Allan, Patrick J. Heizer, Yiping Tu, Norma P. Sandoval, Rachel S. Jung, Jazmin E. Morales, Enikö Sajti, Ty D. Troutman, Thomas L. Saunders, Darren A. Cusanovich et al. · 2018 · Journal of Lipid Research
- Emerging Roles of Single-Cell Multi-Omics in Studying Developmental Temporal PatterningAndrea Lopes, Elia Magrinelli, Ludovic Telley · 2020 · International Journal of Molecular Sciences
- Experience-independent transformation of single-cell 3D genome structure and transcriptome during postnatal development of the mammalian brainLongzhi Tan, Wenping Ma, Honggui Wu, Yinghui Zheng, Dong Xing, Ritchie Chen, Xiang Li, Nicholas Daley, Karl A. Deisseroth, X. Sunney Xie · 2020 · bioRxiv (Cold Spring Harbor Laboratory)
- scJoint: transfer learning for data integration of atlas-scale single-cell RNA-seq and ATAC-seqYingxin Lin, Tung-Yu Wu, Sheng Wan, Jean Yee Hwa Yang, Wing Hung Wong, Y. X. Rachel Wang · 2021 · bioRxiv (Cold Spring Harbor Laboratory)
- Multiscale PHATE Exploration of SARS-CoV-2 Data Reveals Multimodal Signatures of DiseaseManik Razdan Kuchroo, Jessie Huang, Patrick Wong, Jean‐Christophe Grenier, Dennis Legen Shung, Alexander Tong, Carolina Gonçalves de Oliveira Lucas, Jon Klein, Daniel B. Burkhardt, Scott Gigante et al. · 2020 · bioRxiv (Cold Spring Harbor Laboratory)
- A scATAC-seq atlas of chromatin accessibility in axolotl brain regionsWeimin Feng, Shuai Liu, Qiuting Deng, Sulei Fu, Yunzhi Yang, Xi Dai, Shuai Wang, Yijin Wang, Yang Liu, Xiumei Lin et al. · 2023 · Scientific Data
- Recent Advances in Cellular and Molecular Bioengineering for Building and Translation of Biological SystemsGuohao Dai, Adam W. Feinberg, Leo Q. Wan · 2021 · Cellular and Molecular Bioengineering
- Single‐cell transcriptome and chromatin accessibility mapping of upper lip and primary palate fusionSini Cai, Ningbei Yin · 2024 · Journal of Cellular and Molecular Medicine
- Recruitment of homodimeric proneural factors by conserved CAT–CAT E-boxes drives major epigenetic reconfiguration in cortical neurogenesisXabier de Martin, Baldomero Oliva, Gabriel Santpere · 2024 · Nucleic Acids Research
- Integration of unpaired single cell omics data by deep transfer graph convolutional networkYulong Kan, Yunjing Qi, Zhongxiao Zhang, Xikeng Liang, Weihao Wang, Shuilin Jin · 2025 · PLoS Computational Biology
- Dynamic regulation of chromatin accessibility during melanocyte stem cell activationSeo Yeon Lee, Luye An, Paul D. Soloway, Andrew C. White · 2023 · Pigment Cell & Melanoma Research
- Ploidy inference from single-cell data: application to human and mouse cell atlasesFumihiko Takeuchi, Norihiro Kato · 2024 · Genetics
- GFETM: Genome Foundation-Based Embedded Topic Model for scATAC-seq ModelingYimin Fan, Yu Li, Jun Ding, Yue Li · 2024 · Lecture notes in computer science
- Deciphering the Retinal Epigenome during Development, Disease and Reprogramming: Advancements, Challenges and PerspectivesCristina Zibetti · 2022 · Cells
- Narrative engineering of the liverInkyu S Lee, Takanori Takebe · 2022 · Current Opinion in Genetics & Development
- Joint analysis of scATAC-seq datasets using epiConvLi Lin, Liye Zhang · 2022 · BMC Bioinformatics
- Analyzing the gene regulatory network in hepatitis B patients by single-cell ATAC sequencingHuixuan Xu, Haiyan Yu, Fengping Zheng, Cantong Zhang, Wanxia Cai, Xinzhou Zhang, Donge Tang, Yong Dai · 2022 · Clinical Rheumatology
- Proximal tubule responses to injury: interrogation by single-cell transcriptomicsPietro E. Cippà, Andrew P. McMahon · 2023 · Current Opinion in Nephrology & Hypertension
- High-capacity sample multiplexing for single cell chromatin accessibility profilingGregory T. Booth, Riza M. Daza, Sanjay R Srivatsan, José L. McFaline‐Figueroa, Rula Green Gladden, Andrew C. Mullen, Scott N. Furlan, Jay Shendure, Cole Trapnell · 2023 · BMC Genomics
- BAF Complexes and the Glucocorticoid Receptor in Breast CancersNicholas Dietrich, Jackson A. Hoffman, T. Archer · 2020 · Current Opinion in Endocrine and Metabolic Research
- Single-cell multi-omic profiling of chromatin conformation and DNA methylomeDong-Sung Lee, Chongyuan Luo, Jingtian Zhou, Sahaana Chandran, Angeline C. Rivkin, Anna Bartlett, Joseph R. Nery, Conor Fitzpatrick, Carolyn O’Connor, Jesse R. Dixon et al. · 2018 · bioRxiv (Cold Spring Harbor Laboratory)
- Tethering distinct molecular profiles of single cells by their lineage histories to investigate sources of cell state heterogeneityAnna Minkina, Junyue Cao, Jay Shendure · 2022 · bioRxiv (Cold Spring Harbor Laboratory)
- Identifying cross-lineage dependencies of cell-type specific regulators in gastruloidsLuca Braccioli, Teun van den Brand, Noemí Alonso Saiz, Charis Fountas, Patrick H. N. Celie, Justina Kazokaitė-Adomaitienė, Elzo de Wit · 2022 · bioRxiv (Cold Spring Harbor Laboratory)
- Non-CG DNA methylation and MeCP2 stabilize repeated tuning of long genes that distinguish closely related neuron typesJ. Russell Moore, Mati T. Nemera, Rinaldo D. D’Souza, Nicole Hamagami, Adam W. Clemens, Diana C. Beard, Alaina Urman, Victoria Rodriguez Mendoza, Harrison W. Gabel · 2024 · bioRxiv (Cold Spring Harbor Laboratory)
- Epigenomic profiling of mouse nucleus accumbens at single-cell resolutionBhatia, Parth, Yang, Lite, Luo, Jay X.J., Xu, Mengyi, Renthal, William · 2023 · Molecular and Cellular Neuroscience
- DiabetesOmic: A comprehensive multi-omics diabetes databaseFu-hong Cai, Fengcui Qian, Binglong Li, Lidong Li, Bihong Liao, Zhengyang Yu, Qiao-Li Fang, Yanyu Li, Fu-Juan Dong, Li-wei Zhou et al. · 2025 · Computational and Structural Biotechnology Journal
- Robust integration and annotation of single-cell and spatial omics data using interpretable gene programsYuelei Zhang, Wenxuan Ming, Bianjiong Yu, Lele Wang, Kaiyan Lu, Lei Xu, Yanhong Ni, Runzhi Deng, Dijun Chen · 2025 · Cell Genomics
- ATAC-Seq Analysis of Accessible Chromatin: From Experimental Steps to Data AnalysisMayu Tatara, Taiyo Ikeda, Satoshi H. Namekawa, So Maezawa · 2022 · Methods in molecular biology
- Uncovering oligodendrocyte enhancers that control Cnp expressionChuandong Fan, Hongjoo An, Dongkyeong Kim, Yungki Park · 2023 · Human Molecular Genetics
- Range of chromatin accessibility configurations are permissive of GABAergic fate acquisition in developing mouse brainSami K. Kilpinen, Heidi Heliölä, Kaia Achim · 2023 · BMC Genomics
- Single-cell multi-omics analysis identifies context-specific gene regulatory gates and mechanismsSeyed Amir Malekpour, Laleh Haghverdi, Mehdi Sadeghi · 2024 · Briefings in Bioinformatics
- Characterization of Single-Cell Cis-regulatory Elements Informs Implications for Cell DifferentiationYing-Ying Ren, Zhen Liu · 2024 · Genome Biology and Evolution
- Cross-species comparative single-cell transcriptomics highlights the molecular evolution and genetic basis of male infertilityXiaoyan Wang, Liping Cheng, Xiaojian Lu, He Jin, Lina Cui, Yifei Guo, Jingtao Guo, Eugene Yujun Xu · 2024 · Cell Reports
- Facilitate integrated analysis of single cell multiomic data by binarizing gene expression valuesRohan Misra, Alexander Ferrena, Deyou Zheng · 2025 · Nature Communications
- Single Cell Transcriptomic and Chromatin Profiles Suggest Layer Vb Is the Only Layer With Shared Excitatory Cell Types in the Medial and Lateral Entorhinal CortexStefan Blankvoort, Lene Christin Olsen, Clifford G. Kentros · 2022 · Frontiers in Neural Circuits
- scMoresDB: A comprehensive database of single-cell multi-omics data for human respiratory systemKang Chen, Yutong Han, Yanni Wang, Dingli Zhou, Fanjie Wu, Wenhao Cai, Shikang Zheng, Qinyuan Xiao, Haiyue Zhang, Weizhong Li · 2024 · iScience
- Fast clustering and cell-type annotation of scATAC data using pre-trained embeddingsNathan J. LeRoy, Jason P. Smith, Guangtao Zheng, Julia Rymuza, Erfaneh Gharavi, Donald E. Brown, Aidong Zhang, Nathan C. Sheffield · 2024 · NAR Genomics and Bioinformatics
- Exploring the Unknown: How Can We Improve Single-cell RNAseq Cell Type Annotations in Non-model Organisms?Kevin H. Wong, Natalia Andrade-Rodriguez, Nikki Traylor‐Knowles · 2024 · Integrative and Comparative Biology
- Long Noncoding RNA TRIBAL Links the 8q24.13 Locus to Hepatic Lipid Metabolism and Coronary Artery DiseaseSébastien Soubeyrand, Paulina Lau, Majid Nikpay, Lijiang Ma, Johan Björkegren, Ruth McPherson · 2024 · Circulation Genomic and Precision Medicine
- Modelling the genetic aetiology of complex disease: human–mouse conservation of noncoding features and disease-associated lociGeorge Powell, Helen Long, Louisa Zolkiewski, Rebecca Dumbell, Ann‐Marie Mallon, Cecilia M. Lindgren, Michelle M. Simon · 2022 · Biology Letters
- Single-cell sequencing analysis within biologically relevant dimensionsRobert Kousnetsov, Jessica Bourque, Alexey Surnov, Ian Fallahee, Daniel Hawiger · 2024 · Cell Systems
- Sequencing the Human Brain at Single-Cell ResolutionMalosree Maitra, Corina Nagy, Gustavo Turecki · 2019 · Current Behavioral Neuroscience Reports
- A single-cell atlas of mouse olfactory bulb chromatin accessibilityYin Chen, Xiangning Ding, Shiyou Wang, Peiwen Ding, Zaoxu Xu, Jiankang Li, Mingyue Wang, Rong Xiang, Xiaoling Wang, Haoyu Wang et al. · 2021 · Journal of genetics and genomics/Journal of Genetics and Genomics
- The “computable egg”: Myth or useful concept?Kilian Biasuz, Bruno Leggio, Emmanuel Faure, Patrick Lemaire · 2018 · Current Opinion in Systems Biology
- Super-resolution microscopy of chromatin fibers and quantitative DNA methylation analysis of DNA fiber preparations.M. Franek, Agata M. Kilar, P. Fojtík, Marie Olšinová, A. Benda, V. Rotrekl, M. Dvořáčková, J. Fajkus · 2021 · Journal of Cell Science
- Integrated profiling of single cell epigenomic and transcriptomic landscape of Parkinson’s disease mouse brainJixing Zhong, Gen Tang, Jiacheng Zhu, Xin Qiu, Weiying Wu, Ge Li, Xiumei Lin, Langchao Liang, Chaochao Chai, Yuying Zeng et al. · 2020 · bioRxiv (Cold Spring Harbor Laboratory)