Polony gels enable amplifiable DNA stamping and spatial transcriptomics of chronic pain

Fu, Xiaonan, Sun, Li, Dong, Runze, Chen, Jane Y., Silakit, Runglawan, Condon, Logan F., Lin, Yiing, Lin, Shin +2 more·2022·Cell

Cited by (161)

Items 101–161 of 161

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  3. Temperature-sensitive metallized gel fuel: Enhanced combustion and rheology performance with micron-sized aluminum particles
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    Kaitong Dang, Yue Zhao, Kaiqiang Ye, Yunxia Guo, Wenjia Wang, Qinyu Ge, Xiangwei Zhao · 2023 · Biotechnology Journal
  5. Single-Cell Transcriptomics: Technical Advances, Applications and Challenges in Cancer Drug Discovery
    Yueying Yang, Lingyu Meng, Teng Zhang, Jianjun Tan · 2025 · Current Cancer Drug Targets
  6. Decoding spatial transcriptomics: Current trends and future prospects in data analysis methodologies
    Runze Li, Xu Chen, Xuerui Yang · 2024 · Chinese Science Bulletin (Chinese Version)
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    Michael A. Skinnider, Matthieu Gautier, Alan Yue Yang Teo, Claudia Kathe, Thomas Haynes Hutson, Achilleas Laskaratos, Alexandra de Coucy, Nicola Regazzi, Viviana Aureli, Nicholas D. James et al. · 2023 · bioRxiv (Cold Spring Harbor Laboratory)
  8. Sequencing-based Spatial Transcriptomics with scRNA-seq Sensitivity
    Renjie Liao, Defeng Fu, Zaoxu Xu, Han Liang, Xiaoran Zhou, Yiling Elaine Chen, Xue‐Qi Liu, Ji Cheng, Ruidong Guo, Li Chen et al. · 2025 · bioRxiv (Cold Spring Harbor Laboratory)
  9. Advances in spatial multi-omics technologies
    Wenyi Zhang, Xingye Huang, Liyong He, Xiangwei Zhao · 2025 · Chinese Science Bulletin (Chinese Version)
  10. Spatially Resolved Profiling of Compartmentalized Muscle and Brain Inflammation
    Thorge Dobbertin, L. Schirmer · 2025 · European Journal of Immunology
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  14. 3D multi-omics tumour atlases: from technology to biology and clinical translation
    Miao Liu, Jorge I. Villazon, André Forjaz, Xiaolong Tian, Rong Fan, Siyuan Wang, Lingyan Shi, Denis Wirtz, Ashley L. Kiemen · 2026 · Nature reviews. Cancer
  15. Integrating cytological images and spatial transcriptomics for cell segmentation with DISSECT
    Yufeng He, Y ZHAO, Rui Zhang, Heli Yang, Zongxu Zhang, Pengfei Ren, Ce Luo, Peng Zhang, Z K Zhang, Sen Hou et al. · 2026 · Nature Computational Science
  16. Large field of view and spatial region of interest transcriptomics in fixed tissue
    Xiaonan Cui, Dong Xue, Mengzhu Hu, Wenjian Zhou, Weiyang Shi · 2024 · Communications Biology
  17. Well-ST-seq: cost-effective spatial transcriptomics at cellular level and high RNA capture efficiency
    Nianzuo Yu, Zhengyang Jin, Chongyang Liang, Junhu Zhang, Bai Yang · 2023 · bioRxiv (Cold Spring Harbor Laboratory)
  18. Spatially tuneable multi-omics sequencing using light-driven combinatorial barcoding of molecules in tissues
    Giorgia Battistoni, Sito Torres-Garcia, Chee Ying Sia, Silvia Corriero, Carla Boquetale, Elena Williams, Martina Alini, Nicole Hemmer, Shankar Balasubramanian, Benjamin Czech et al. · 2024 · bioRxiv (Cold Spring Harbor Laboratory)
  19. OpenFISH enables integrated high-resolution spatial transcriptomics and metabolomics on a single tissue section
    Xinyang Li, Yuan Huang, Shuo Wang, Ya Li, Fengting Jiang, Jiawei Gao, Yaran Yang, Qingfeng Wu, Woo‐Ping Ge, Lihui Duan · 2025 · bioRxiv (Cold Spring Harbor Laboratory)
  20. Decoder-FFPE-seq enables sensitive, genome-wide spatial transcriptomics of archival tissues at single-cell resolution
    Jiao Cao, Jun Zeng, Yiwei Meng, Shanqing Huang, Jing Zhang, Xing Fang, Yang Guo, Weixiong Shi, Yutong Liu, Zhong Zheng et al. · 2026 · Science Advances
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    Weige Zhou, Xueying Fan, Lanxiang Li, Jianrong Zheng, Xiaodong Liu, Wenfei Jin, Luyi Tian · 2026 · Briefings in Bioinformatics
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    Kayleigh Casmey, Maria Zimmermann, Yuxin Xie, Sierra A. Codeluppi-Arrowsmith, Gustavo Turecki · 2025 · Genes
  24. Deep Learning‐Based Quality Control Using Subcellular RNA Spatial Distribution Patterns for Cell Segmentation in Spatial Transcriptomics Data
    Renpeng Ding, Kerem Celikay, Ming Ni, Yong Hou, Yan Zhou, Karl Rohr · 2025 · Small Methods
  25. DANST enables cell-type deconvolution in spatial transcriptomics using deep domain adversarial neural networks
    Xueqin Zhang, Zhichao Wu, Tianqi Wang, Yunlan Zhou, Weihong Ding, Huitong Zhu, Qing Zhang · 2026 · Communications Biology
  26. Dissecting human organ development using spatial technologies
    Xiaoshan Zhang, J. Jeya Vandana, Benjamin C. Greenspun, Shuibing Chen · 2026 · Developmental Cell
  27. Amplification bias in sequencing-based spatial transcriptomics: sources, mechanisms, impacts, and mitigation strategies
    Yuting Shan, Yanyan Piao, Qinyu Ge · 2026 · Briefings in Bioinformatics
  28. Dendrimeric DNA Coordinate Barcoding Design for Spatial RNA Sequencing
    Jiao Cao, Zhong Zheng, Di Sun, Xin Chen, Rui Cheng, Tianpeng Lv, Yu An, Junhua Zheng, Jia Tao Song, Lingling Wu et al. · 2023 · bioRxiv (Cold Spring Harbor Laboratory)
  29. scResolve: Recovering single cell expression profiles from multi-cellular spatial transcriptomics
    Hao Chen, Young Je Lee, Jose A. Ovando, Lorena Rosas, Mauricio Rojas, Ana Lucia Mora, Ziv Bar‐Joseph, Jose Lugo-Martinez · 2023 · bioRxiv (Cold Spring Harbor Laboratory)
  30. scBSP: A fast and accurate tool for identifying spatially variable genes from spatial transcriptomic data
    Jinpu Li, Yiqing Wang, Mauminah Raina, Chunhui Xu, Li Su, Qi Guo, Qin Ma, Juexin Wang, Dong He Xu · 2024 · bioRxiv (Cold Spring Harbor Laboratory)
  31. Optics-free reconstruction of shapes, images and volumes with DNA barcode proximity graphs
    Hanna Liao, Sanjay V. Kottapalli, Yuqi Huang, Matthew Chaw, Jase Gehring, Olivia Waltner, Melissa Phung-Rojas, Riza M. Daza, Frederick A. Matsen IV, Cole Trapnell et al. · 2026 · eLife
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  33. Embryo-scale Visual Cell Sorting reveals a conserved transcriptomic signature of nucleolar size linked to proteostasis
    Hyeon-Jin Kim, Sriram Pendyala, Josephine Lin, Tony Cooke, Gang Li, William Stafford Noble, Xinxian Deng, Christine M. Distèche, Cole Trapnell, Douglas M. Fowler · 2026 · bioRxiv (Cold Spring Harbor Laboratory)
  34. Development of spatial transcriptomics and its application in tumor study
    Fulin Liu, Wenqi Duan, Guohui Zhang · 2024 · Elsevier eBooks
  35. Learning Phenotype Associated Signature in Spatial Transcriptomics with PASSAGE
    Chen‐Kai Guo, Chen‐Rui Xia, Guangdun Peng, Zhi‐Jie Cao, Ge Gao · 2025 · Small Methods
  36. Advances in single-cell RNA-seq for nascent transcriptome and epitranscriptome
    Minsong Gao, Jianzhao Liu · 2025 · Scientia Sinica Vitae
  37. Sequencing-based Spatial Transcriptomics with scRNA-seq Sensitivity
    Gufeng Wang, Renjie Liao, Defeng Fu, Zaoxu Xu, Han Liang, Xiaoran Zhou, Chen Yiling, Xue‐Qi Liu, Ji Cheng, Ruidong Guo et al. · 2025 · Research Square
  38. Advances and breakthroughs in single-cell nucleic acid omics
    Zhongxing Sun, Zhuoning Li, Yin Tang, Fang Dong · 2025 · Scientia Sinica Vitae
  39. DNA-barcoded microneedle array patch enabling the profiling of in vivo spatiotemporal transcriptomics
    Yuanbin Guo, Yile Zhang, Xinyin Li, Jingwen Kuang, Ke Cao, Feng Chen, Chunhai Fan, Yongxi Zhao · 2025 · bioRxiv (Cold Spring Harbor Laboratory)
  40. Spatial mapping of RNA turnover kinetics and regulatory landscapes of mRNA stability in the mammalian brain
    Qi Qiu, Hongjie Zhang, Zijie Xia, William N. D. Gao, Julie Leu, Dongming Liang, Ying Li, Yijing Su, Emily R. Feierman, Van Horn et al. · 2026 · bioRxiv (Cold Spring Harbor Laboratory)
  41. Molecular regulation of spermatogenesis: Insights from spatial transcriptomics
    Fei-Chen Wang, Zhen He, Hai-Ping Tao, Qi-en Yang · 2026 · Current topics in developmental biology/Current Topics in Developmental Biology
  42. Central targets for itch
    Di Mu, Yan-Gang Sun · 2026 · Elsevier eBooks
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    Torben Redmer, Josefine Radke, Helena Radbruch · 2026 · Die Pathologie
  44. Mosaic: Single-Cell Atlas of Stress
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  45. Towards digital biology: Recent advances in spatial biology for organogenesis and regeneration
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  46. Cell Type-informed Characterization of Spatial Niches from Spatial Multimodal and Multi-omics Data
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  47. Spatially tunable multiomic sequencing using light-driven combinatorial barcoding of molecules in tissues
    Giorgia Battistoni, Sito Torres-Garcia, Chee Ying Sia, Silvia Corriero, Carla Boquetale, Elena Williams, Anna Cregeen, Karolina Wasilewska, Martina Alini, Nicole Hemmer et al. · 2026 · Proceedings of the National Academy of Sciences
  48. An Integrated and Robust Deep Learning Framework for Denoising and Analyzing Single‐Cell Spatial Transcriptomics
    Yaxuan Cui, Yang Cui, Ruheng Wang, Xin Zeng, Zheyong Zhu, Ding Yi, Ruihua Guo, Tetsuya Sakurai, Kenta Nakai, Xiucai Ye et al. · 2026 · Advanced Intelligent Systems
  49. Methods toward Single-Cell Total-Analysis
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  50. Well-ST-seq: Cost-Effective and Near-Cellular Spatial Transcriptomics Using Deterministic Barcoded Bead Arrays
    Nianzuo Yu, Zhengyang Jin, Shoujun Zhu, Zhiying Hu, Xiaoduo Tang, Chongyang Liang, Junhu Zhang, Bai Yang · 2026 · Analytical Chemistry
  51. Correcting spatial transcriptomics data affected by a prevalent transcript leakage problem across platforms, species, and tissues
    Christina Huan Shi, Yibo Zhai, Savio Ho-Chit Chow, Li Li, Chase Matthew Carver, Marcos G. Teneche, Jesus Flores, Colin Kern, Peter D. Adams, Bing Ren et al. · 2026 · bioRxiv (Cold Spring Harbor Laboratory)
  52. Spatial omics illuminates tumor heterogeneity
    Neha Srinivas, Serap Erdogmus, Gürkan Mollaoglu · 2026 · Cell Reports Methods
  53. Spatial omics in the AI era: Technologies, algorithmic ecosystems, biological applications, and large model perspectives
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  54. dbverse scales spatial omics analysis with embedded analytical databases
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  55. Spatial transcriptomic and proteomic approaches for profiling prognostic cell communities in solid tumors
    Xia Lei, Xuan Cui, Yuanli Ni, Yihan Ding, Yadi Miao, Cheng Qian, Juanjuan Shan · 2026 · Journal of Advanced Research
  56. Spatial chromatin architecture and accessibility co-profiling of mammalian tissues
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  57. Spatial multiomics in biomedical research: advances beyond transcriptomics
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  58. Linking hydration capacity to network topology and viscoelasticity in HEMA-based hydrogels
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  60. Navigating the rapidly evolving landscape of sequencing-based spatial transcriptomics technologies: a comprehensive multi-platform benchmark
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  61. Artificial intelligence in spatial transcriptomics: a review of methods, datasets, and directions
    Neelam Sharma, Rabia Şen, Cemal Erdem · 2026 · Briefings in Bioinformatics