Cryo-EM structure of gas vesicles for buoyancy-controlled motility
Open accessPublished version of a preprint
Abstract
Gas vesicles allow a diverse group of bacteria and archaea to move in the water column by controlling their buoyancy (1). These gas-filled cellular nanocompartments are formed by up to micrometers long protein shells that are permeable only to gas. The molecular basis of their unique properties and mechanism of assembly remains unknown. Here, we solve the 3.2 Å cryo-EM structure of the B . megaterium gas vesicle shell made from the structural protein GvpA that self-assembles into hollow helical cylinders closed off by cone-shaped tips. Remarkably, the unique fold adopted by GvpA generates a corrugated cylinder surface typically found in force-bearing thin-walled structures. We identified pores in the vesicle wall that enable gas molecules to freely diffuse in and out of the GV shell, while the exceptionally hydrophobic interior surface effectively repels water. Our results show that gas vesicles consist of two helical half-shells connected through a unique arrangement of GvpA monomers, suggesting a mechanism of gas vesicle biogenesis. Comparative structural analysis confirms the evolutionary conservation of gas vesicle assemblies and reveals molecular details of how the secondary structural protein GvpC reinforces the GvpA shell. Our findings provide a structural framework that will further research into the biology of gas vesicles, and enable rational molecular engineering to harness their unique properties for acoustic imaging (2, 3).
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Highly accurate protein structure prediction with AlphaFold
Jumper, J., Evans, R., Pritzel, A., Green, T., Figurnov, M., Ronneberger, O., Tunyasuvunakool, K., Bates, R., Žídek, A., Potapenko, A., et al. (2021) · Nature · doi:10.1038/s41586-021-03819-2 · Cited by 43,764 · see citing works
ColabFold - Making protein folding accessible to all
Mirdita, M., Schütze, K., Moriwaki, Y., Heo, L., Ovchinnikov, S., & Steinegger, M. (2021) · doi:10.1101/2021.08.15.456425 · Cited by 9,391 · see citing works
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- Authors
- Huber, S. T., Terwiel, D., Evers, W. H., Maresca, D., & Jakobi, A. J.
- Affiliations
- Delft University of Technology (NL)
- Corresponding author
- Maresca, David
- Jakobi, Arjen J.
- Venue
- Cell
- Publisher
- Elsevier BV
- Published
- 2023-03
- Volume
- 186
- Issue
- 5
- Pages
- 975-986.e13
- ISSN
- 0092-8674 (ISSN-L)
- PMC
- PMC9994262
- OpenAlex
- W4322762547
- Cited by
- 62
- References
- 2
- Citations by year
- 2026: 10 · 2025: 28 · 2024: 18 · 2023: 6
- FWCI
- 5.49
- Type
- journal article
- Language
- en
- Open access
- hybrid
- doi.org
- Licence
- Locations
- Cell (publishedVersion, cc-by)
- bioRxiv (Cold Spring Harbor Laboratory) (acceptedVersion, cc-by-nc-nd)
- PubMed Central (publishedVersion, cc-by)
- PubMed (publishedVersion)
- Research Repository (Delft University of Technology) (submittedVersion)
- Data Archiving and Networked Services (DANS) (submittedVersion, cc-by)
- Funders
- Netherlands Centre for Electron Nanoscopy
- European Commission (HORIZON2020, 852880)
- Nederlandse Organisatie voor Wetenschappelijk Onderzoek (184.034.014, NWO.STU.018-2.007, STU.019.021)
- Medical Delta
- Topics
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Structural Biology › Advanced Electron Microscopy Techniques and Applications
- Physical Sciences › Materials Science › Materials Chemistry › Enzyme Structure and Function
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › Protein Structure and Dynamics
- Keywords
- gas vesicles, buoyancy control, bacterial motility, archaea, evolutionary conservation
- MeSH terms
- Archaea, Engineering, Biological Evolution, Reinforcement, Psychology, Cryoelectron Microscopy
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