Quantification of Differential Transcription Factor Activity and Multiomics-Based Classification into Activators and Repressors: diffTF
Berest, Ivan, Arnold, Christian, Reyes-Palomares, Armando, Palla, Giovanni, Rasmussen, Kasper Dindler, Giles, Holly, Bruch, Peter-Martin, Huber, Wolfgang +3 more·2019·Cell Reports
Cited by (128)
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- Supplementary Information from β-Catenin–Driven Differentiation Is a Tissue-Specific Epigenetic Vulnerability in Adrenal CancerDipika R. Mohan, Kleiton Silva Borges, Isabella Finco, Christopher Ryan LaPensee, Juilee Rege, April L. Solon, Donald W. Little, Tobias Else, Madson Queiroz Almeida, Derek Dang et al. · 2023
- Supplementary Information from β-Catenin–Driven Differentiation Is a Tissue-Specific Epigenetic Vulnerability in Adrenal CancerDipika R. Mohan, Kleiton Silva Borges, Isabella Finco, Christopher Ryan LaPensee, Juilee Rege, April L. Solon, Donald W. Little, Tobias Else, Madson Queiroz Almeida, Derek Dang et al. · 2023
- Additional file 11 of Epigenetic regulation of innate immune memory in microgliaXiaoming Zhang, Laura Kracht, Antônio Marcondes Lerário, Marissa Lisa Dubbelaar, Nieske Brouwer, Evelyn M. Wesseling, Erik Boddeke, Bart J. L. Eggen, Susanne M. Kooistra · 2022 · Figshare
- Additional file 6 of Epigenetic regulation of innate immune memory in microgliaXiaoming Zhang, Laura Kracht, Antônio Marcondes Lerário, Marissa Lisa Dubbelaar, Nieske Brouwer, Evelyn M. Wesseling, Erik Boddeke, Bart J. L. Eggen, Susanne M. Kooistra · 2022 · Figshare
- Additional file 13 of Epigenetic regulation of innate immune memory in microgliaXiaoming Zhang, Laura Kracht, Antônio Marcondes Lerário, Marissa Lisa Dubbelaar, Nieske Brouwer, Evelyn M. Wesseling, Erik Boddeke, Bart J. L. Eggen, Susanne M. Kooistra · 2022 · Figshare
- Additional file 14 of Epigenetic regulation of innate immune memory in microgliaXiaoming Zhang, Laura Kracht, Antônio Marcondes Lerário, Marissa Lisa Dubbelaar, Nieske Brouwer, Evelyn M. Wesseling, Erik Boddeke, Bart J. L. Eggen, Susanne M. Kooistra · 2022 · Figshare
- Additional file 8 of Epigenetic regulation of innate immune memory in microgliaXiaoming Zhang, Laura Kracht, Antônio Marcondes Lerário, Marissa Lisa Dubbelaar, Nieske Brouwer, Evelyn M. Wesseling, Erik Boddeke, Bart J. L. Eggen, Susanne M. Kooistra · 2022 · Figshare
- Additional file 10 of Epigenetic regulation of innate immune memory in microgliaXiaoming Zhang, Laura Kracht, Antônio Marcondes Lerário, Marissa Lisa Dubbelaar, Nieske Brouwer, Evelyn M. Wesseling, Erik Boddeke, Bart J. L. Eggen, Susanne M. Kooistra · 2022 · Figshare
- Additional file 9 of Epigenetic regulation of innate immune memory in microgliaXiaoming Zhang, Laura Kracht, Antônio Marcondes Lerário, Marissa Lisa Dubbelaar, Nieske Brouwer, Evelyn M. Wesseling, Erik Boddeke, Bart J. L. Eggen, Susanne M. Kooistra · 2022 · Figshare
- Additional file 7 of Epigenetic regulation of innate immune memory in microgliaXiaoming Zhang, Laura Kracht, Antônio Marcondes Lerário, Marissa Lisa Dubbelaar, Nieske Brouwer, Evelyn M. Wesseling, Erik Boddeke, Bart J. L. Eggen, Susanne M. Kooistra · 2022 · Figshare
- Additional file 5 of Epigenetic regulation of innate immune memory in microgliaXiaoming Zhang, Laura Kracht, Antônio Marcondes Lerário, Marissa Lisa Dubbelaar, Nieske Brouwer, Evelyn M. Wesseling, Erik Boddeke, Bart J. L. Eggen, Susanne M. Kooistra · 2022 · Figshare
- Additional file 12 of Epigenetic regulation of innate immune memory in microgliaXiaoming Zhang, Laura Kracht, Antônio Marcondes Lerário, Marissa Lisa Dubbelaar, Nieske Brouwer, Evelyn M. Wesseling, Erik Boddeke, Bart J. L. Eggen, Susanne M. Kooistra · 2022 · Figshare
- Integrative Data Analysis to Uncover Transcription Factors Involved in Gene Dysregulation of Nine Autoimmune and Inflammatory DiseasesNader Hosseini Naghavi, Steven M. Kerfoot, Parisa Shooshtari · 2024 · bioRxiv (Cold Spring Harbor Laboratory)
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- Additional file 1 of Epigenetic regulation of innate immune memory in microgliaZhang, Xiaoming, Laura Kracht, Antônio Marcondes Lerário, Marissa Lisa Dubbelaar, Nieske Brouwer, Evelyn M. Wesseling, Erik Boddeke, Bart J. L. Eggen, Susanne M. Kooistra · 2022 · Figshare
- Additional file 2 of Epigenetic regulation of innate immune memory in microgliaZhang, Xiaoming, Laura Kracht, Antônio Marcondes Lerário, Marissa Lisa Dubbelaar, Nieske Brouwer, Evelyn M. Wesseling, Erik Boddeke, Bart J. L. Eggen, Susanne M. Kooistra · 2022 · Figshare
- Additional file 3 of Epigenetic regulation of innate immune memory in microgliaZhang, Xiaoming, Laura Kracht, Antônio Marcondes Lerário, Marissa Lisa Dubbelaar, Nieske Brouwer, Evelyn M. Wesseling, Erik Boddeke, Bart J. L. Eggen, Susanne M. Kooistra · 2022 · Figshare
- Additional file 4 of Epigenetic regulation of innate immune memory in microgliaZhang, Xiaoming, Laura Kracht, Antônio Marcondes Lerário, Marissa Lisa Dubbelaar, Nieske Brouwer, Evelyn M. Wesseling, Erik Boddeke, Bart J. L. Eggen, Susanne M. Kooistra · 2022 · Figshare
- Systematic comparison of estimates of transcription factor activity by ATAC-seq and multiplexed reporter assaysMax Trauernicht, Vinícius H. Franceschini-Santos, H. Yücel, Teodora Filipovska, B. van Steensel · 2026 · bioRxiv
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- transfactor : transcription factor activity estimation via probabilistic gene expression deconvolutionKoen Van den Berge, Peter J. Bickel, Sandrine Dudoit · 2026 · Biostatistics