Chromatin-state barriers enforce an irreversible mammalian cell fate decision
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Abstract
Stem and progenitor cells have the capacity to balance self-renewal and differentiation. Hematopoietic myeloid progenitors replenish more than 25 billion terminally differentiated neutrophils every day under homeostatic conditions and can increase this output in response to stress or infection. At what point along the spectrum of maturation do progenitors lose capacity for self-renewal and become irreversibly committed to differentiation? Using a system of conditional myeloid development that can be toggled between self-renewal and differentiation, we interrogate determinants of this "point of no return" in differentiation commitment. Irreversible commitment is due primarily to loss of open regulatory site access and disruption of a positive feedback transcription factor activation loop. Restoration of the transcription factor feedback loop extends the window of cell plasticity and alters the point of no return. These findings demonstrate how the chromatin state enforces and perpetuates cell fate and identify potential avenues for manipulating cell identity.
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Development is fundamentally irreversible, providing a strong analogy for the irreversible changes that churn during chromosome and genome evolution.
“Interestingly, development is fundamentally irreversible (181–183), providing a strong analogy for the irreversible changes that churn during chromosome and genome evolution.”
From Topological Approaches in Animal Comparative Genomics (2026) · cites this paper as [182]
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- Authors
- Blanco, M. A., Sykes, D. B., Gu, L., Wu, M., Petroni, R., Karnik, R., Wawer, M., Rico, J., Li, H., Jacobus, W. D., Jambhekar, A., Cheloufi, S., Meissner, A., Hochedlinger, K., Scadden, D. T., & Shi, Y.
- Affiliations
- Harvard University (US)
- Boston Children's Hospital (US)
- University of Pennsylvania (US)
- Broad Institute (US)
- University of California, Riverside (US)
- Corresponding author
- Scadden, David T.
- Shi, Yang
- ORCID
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- Cell Reports
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- Elsevier BV
- Published
- 2021-11
- Volume
- 37
- Issue
- 6
- Pages
- 109967
- ISSN
- 2211-1247 (ISSN-L)
- OpenAlex
- W3211895395
- Cited by
- 45
- References
- 10
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- 2026: 8 · 2025: 7 · 2024: 10 · 2023: 7 · 2022: 12 · 2021: 1
- FWCI
- 2.35
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- journal article
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- en
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- gold
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- Locations
- Cell Reports (publishedVersion, cc-by-nc-nd)
- bioRxiv (Cold Spring Harbor Laboratory) (acceptedVersion, cc-by-nc-nd)
- PubMed (publishedVersion)
- Oxford University Research Archive (ORA) (University of Oxford) (submittedVersion, cc-by-nc-nd)
- Funders
- Boston Children's Hospital
- Ludwig Institute for Cancer Research
- National Institutes of Health (5R01HD058013-10)
- Cancer Research Coordinating Committee (5P01GM099117)
- National Cancer Institute
- Deutsche Forschungsgemeinschaft (390649896, EXC 2026)
- Max-Planck-Gesellschaft
- Leukemia and Lymphoma Society (3353-15)
- American Society of Hematology
- Topics
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › Genomics and Chromatin Dynamics
- Health Sciences › Medicine › Hematology › Hematopoietic Stem Cell Transplantation
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › Epigenetics and DNA Methylation
- Keywords
- chromatin state, cell fate determination, myeloid progenitor cells, granulocytic differentiation, self-renewal, cellular plasticity, point of no return, hematopoiesis, cell identity
- MeSH terms
- Animals, Bone Marrow, Cell Differentiation, Cells, Cultured, Chromatin, Female, Hematopoiesis, Hematopoietic Stem Cells, Transcription Factors, Cell Lineage, Gene Expression Profiling, Myeloid Cells, Mice
About these checks
Registry, retraction, Cites and statistics results are computed, not judged, with one exception: a printed reference that no index lists is read once by a model before it counts as a citation error. Claims are extracted by a model and kept only when their quote appears verbatim in the text; each cited source is then checked, with a model’s help, for whether it says what the claim relies on. Those verdicts can be wrong — read the claim’s quote and the cited source before relying on one.
Statistics and arithmetic are recomputed, not judged.
Confidence bands are shown only for fields calibrated on our annotated test set. None is calibrated yet, so no band is shown.
What counts as a claim ›How we measure confidence ›How we check this ›
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