The Integrative Human Microbiome Project: Dynamic Analysis of Microbiome-Host Omics Profiles during Periods of Human Health and Disease

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Items 201–300 of 536

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2. Emerging microfluidic technologies for microbiome research
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3. In Vitro Models for Investigating Intestinal Host–Pathogen Interactions
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4. Best Practices for Microbiome Study Design in Companion Animal Research
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5. Human host status inference from temporal microbiome changes via recurrent neural networks
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6. Histamine-producing bacteria and their role in gastrointestinal disorders
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7. Machine Learning Modeling from Omics Data as Prospective Tool for Improvement of Inflammatory Bowel Disease Diagnosis and Clinical Classifications
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8. Ecosystem-specific microbiota and microbiome databases in the era of big data
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9. Gut Microbiota
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10. Metaproteomics Study of the Gut Microbiome
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11. HMPDACC: a Human Microbiome Project Multi-omic data resource
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12. Integrating pan-genome with metagenome for microbial community profiling
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13. The Female Reproductive Tract Microbiome—Implications for Gynecologic Cancers and Personalized Medicine
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14. Structural disruption of Ntox15 nuclease effector domains by immunity proteins protects against type VI secretion system intoxication in Bacteroidales
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15. The MITRE trial protocol: a study to evaluate the microbiome as a biomarker of efficacy and toxicity in cancer patients receiving immune checkpoint inhibitor therapy
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16. Atlas of mRNA translation and decay for bacteria
    Susanne Huch, Lilit Nersisyan, Maria Ropat, Donal Barrett, Mengjun Wu, Jing Wang, Valerie Diane Valeriano, Nelli Vardazaryan, Jaime Huerta‐Cepas, Wei Wu et al. · 2023 · Nature Microbiology
17. Small intestinal bacterial overgrowth: current update
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18. CAMISIM: Simulating metagenomes and microbial communities
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19. Ecological Structuring of Temperate Bacteriophages in the Inflammatory Bowel Disease-Affected Gut
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20. Brain-gut axis and psychiatric disorders: A perspective from bibliometric and visual analysis
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21. Evaluation of Compatibility of 16S rRNA V3V4 and V4 Amplicon Libraries for Clinical Microbiome Profiling
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22. A Metabolome- and Metagenome-Wide Association Network Reveals Microbial Natural Products and Microbial Biotransformation Products from the Human Microbiota
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23. Current and Future Approaches for Monitoring Responses to Anti-complement Therapeutics
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24. Microbial Modulation of Coagulation Disorders in Venous Thromboembolism
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25. Effects of β-Lactam Antibiotics on Gut Microbiota Colonization and Metabolites in Late Preterm Infants
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26. The Clinical Relevance of the Microbiome in Hidradenitis Suppurativa: A Systematic Review
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27. Gut–bladder axis in recurrent UTI
    Mark A. Schembri, Nguyen Thi Khanh Nhu, Minh‐Duy Phan · 2022 · Nature Microbiology
28. Comparative evaluation of a new magnetic bead-based DNA extraction method from fecal samples for downstream next-generation 16S rRNA gene sequencing
    Kara D. McGaughey, Tulay Yilmaz-Swenson, Nourhan M. Elsayed, Dianne A. Cruz, Ramona Rodriguez, Michael D. Kritzer, Angel V. Peterchev, Megan Gray, Samantha R. Lewis, Jeffrey M. Roach et al. · 2018 · PLoS ONE
29. Impact of Amoxicillin-Clavulanate followed by Autologous Fecal Microbiota Transplantation on Fecal Microbiome Structure and Metabolic Potential
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30. Unique roles of vaginal Megasphaera phylotypes in reproductive health
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31. The First 1000 Days: Assembly of the Neonatal Microbiome and Its Impact on Health Outcomes
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32. Deciphering Human Gut Microbiota–Nutrient Interactions: A Role for Biochemistry
    Carina L. Chittim, Stephania M. Irwin, Emily P. Balskus · 2018 · Biochemistry
33. Gut Microbial Protein Expression in Response to Dietary Patterns in a Controlled Feeding Study: A Metaproteomic Approach
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34. Multiple-Disease Detection and Classification across Cohorts via Microbiome Search
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35. Insights into the Human Virome Using CRISPR Spacers from Microbiomes
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36. Ménage à trois: Virus, Host, and Microbiota in Experimental Infection Models
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37. From microbial technology to microbiota medicine as a clinical discipline: Sustainable development goal
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38. Decoding the diagnostic and therapeutic potential of microbiota using pan-body pan-disease microbiomics
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39. Urinary Microbiota Associated with Preterm Birth: Results from the Conditions Affecting Neurocognitive Development and Learning in Early Childhood (CANDLE) Study
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40. Functional relevance of microbiome signatures: The correlation era requires tools for consolidation
    Ludovica F. Buttó, Dirk Haller · 2017 · Journal of Allergy and Clinical Immunology
41. Oral Microbiome and Host Health: Review on Current Advances in Genome-Wide Analysis
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42. Implications of Gut Microbiota in Epithelial–Mesenchymal Transition and Cancer Progression: A Concise Review
    Ishita Gupta, Shona Pedersen, Semir Vranić, Ala‐Eddin Al Moustafa · 2022 · Cancers
43. Statistical modeling of gut microbiota for personalized health status monitoring
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44. Construction, comparison and evolution of networks in life sciences and other disciplines
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45. Foodomics Applications
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46. Vitamin biosynthesis in the gut: interplay between mammalian host and its resident microbiota
    Chiara Tarracchini, Cathy Lordan, Christian Milani, Luiza de Paula Dias Moreira, Qusai M. Alabedallat, Alejandra de Moreno de LeBlanc, Francesca Turroni, Gabriele Andrea Lugli, Leonardo Mancabelli, Giulia Longhi et al. · 2025 · Microbiology and Molecular Biology Reviews
47. Microbiome-Mediated Immune Signaling in Inflammatory Bowel Disease and Colorectal Cancer: Support From Meta-omics Data
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48. Integrating microbiome and metabolome revealed microbe-metabolism interactions in the stomach of patients with different severity of peptic ulcer disease
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49. Harnessing AI and Gut Microbiome Research for Precision Health
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50. Statistical Considerations in the Design and Analysis of Longitudinal Microbiome Studies
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51. Recent advances in deep learning and language models for studying the microbiome
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52. Comparison of two commercial DNA extraction kits for the analysis of nasopharyngeal bacterial communities
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53. Signatures of vaginal microbiota by 16S rRNA gene: potential bio-geographical application in Chinese Han from three regions of China
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54. ImmUniverse Consortium: Multi-omics integrative approach in personalized medicine for immune-mediated inflammatory diseases
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55. Longitudinal Analysis of Serum Cytokine Levels and Gut Microbial Abundance Links IL-17/IL-22 With Clostridia and Insulin Sensitivity in Humans
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56. The association of maternal factors with the neonatal microbiota and health
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57. Phenetic Comparison of Prokaryotic Genomes Using k-mers
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58. Sample pre-treatment procedures for the omics analysis of human gut microbiota: Turning points, tips and tricks for gene sequencing and metabolomics
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59. DNA methylation biomarkers of future health outcomes in children
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60. A joint modeling approach for longitudinal microbiome data improves ability to detect microbiome associations with disease
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61. Metabolome and microbiome multi-omics integration from a murine lung inflammation model of bronchopulmonary dysplasia
    Ahmed El‐Saie, Chenlian Fu, Sandra L. Grimm, Matthew J. Robertson, Kristi Louise Hoffman, Vasanta Putluri, Chandra Shekar R. Ambati, Nagireddy Putluri, Binoy Shivanna, Cristian Coarfa et al. · 2022 · Pediatric Research
62. A Platform for Co-Culture of Primary Human Colonic Epithelium With Anaerobic Probiotic Bacteria
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63. EXPERT: transfer learning-enabled context-aware microbial community classification
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64. Comparison of Methods for Biological Sequence Clustering
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65. Multi-omic Microbiome Profiles in the Female Reproductive Tract in Early Pregnancy
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66. Impaired blood‐brain barrier in the microbiota‐gut‐brain axis: Potential role of bipolar susceptibility gene TRANK1
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67. Exploring microbial diversity and biosynthetic potential in zoo and wildlife animal microbiomes
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68. Emerging Concepts in Periprosthetic Joint Infection Research: The Human Microbiome
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69. Human microbiota-associated animal models: a review
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70. Gardnerella diversity and ecology in pregnancy and preterm birth
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71. Circulating microbial RNA and health
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72. Metaproteomic analysis of human gut microbiome in digestive and metabolic diseases
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73. Changes in microbiome during and after travellers’ diarrhea: what we know and what we do not
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74. Diversity in Biology: definitions, quantification, and models
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75. Health State Estimation
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76. Standards for Collection, Preservation, and Transportation of Fecal Samples in TCM Clinical Trials
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77. The Role of the Gut Microbiome in Urinary Tract Infections: A Narrative Review
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78. Exploration of the Vaginal and Gut Microbiome in African American Women by Body Mass Index, Class of Obesity, and Gestational Weight Gain: A Pilot Study
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79. The cutaneous ecosystem: the roles of the skin microbiome in health and its association with inflammatory skin conditions in humans and animals
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80. Enriched pathways in gut microbiome predict response to immune checkpoint inhibitor treatment across demographic regions and various cancer types
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81. Association of distinct microbial and metabolic signatures with microscopic colitis
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82. Gut microbiota and autism spectrum disorders: where do we stand?
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83. High Resolution Melt Assays to Detect and Identify Vibrio parahaemolyticus, Bacillus cereus, Escherichia coli, and Clostridioides difficile Bacteria
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84. WHAM!: a web-based visualization suite for user-defined analysis of metagenomic shotgun sequencing data
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85. Wise Roles and Future Visionary Endeavors of Current Emperor: Advancing Dynamic Methods for Longitudinal Microbiome Meta‐Omics Data in Personalized and Precision Medicine
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86. AGAMEMNON: an Accurate metaGenomics And MEtatranscriptoMics quaNtificatiON analysis suite
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87. High-throughput screening of the effects of 90 xenobiotics on the simplified human gut microbiota model (SIHUMIx): a metaproteomic and metabolomic study
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88. Ambient long-term exposure to organophosphorus pesticides and the human gut microbiome: an observational study
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89. Bioinformatics and machine learning in gastrointestinal microbiome research and clinical application
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90. Machine Learning Based Metagenomic Prediction of Inflammatory Bowel Disease
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91. The Human Microbiota and Obesity: A Literature Systematic Review of In Vivo Models and Technical Approaches
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92. The Human Microbiome in Health and Disease
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93. Large scale microbiome profiling in the cloud
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94. Comparative genomics identifies thousands of candidate structured RNAs in human microbiomes
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95. Nanostructured biomaterials with antimicrobial activity for tissue engineering
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96. Constructing personalized longitudinal holo’omes of colon cancer-prone humans and their modeling in flies and mice
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97. Relationship between gut microbiota and multiple sclerosis: a scientometric visual analysis from 2010 to 2023
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98. Systems Biology of Human Microbiome for the Prediction of Personal Glycaemic Response
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99. Challenges for pathologists in implementing clinical microbiome diagnostic testing
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100. A data-centric perspective on exposomics data analysis
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