Microbial Respiration and Formate Oxidation as Metabolic Signatures of Inflammation-Associated Dysbiosis

Hughes, Elizabeth R., Winter, Maria G., Duerkop, Breck A., Spiga, Luisella, Furtado de Carvalho, Tatiane, Zhu, Wenhan, Gillis, Caroline C., Büttner, Lisa +6 more·2017·Cell Host & Microbe
DOI 10.1016/j.chom.2017.01.005

Cited by (353)

Items 301–353 of 353

  1. Intestinal microbiota and broiler health: hype or hope?
    Kers, Annelies · 2020
  2. Designing New Foods or Food Ingredients Targeting the Gut Microbiota to Reduce FODMAP-Induced Irritable Bowel Syndrome (IBS)
    Shane Thomas O’Donnell, R. Paul Ross, Elke K. Arendt, Catherine Stanton · 2021 · Elsevier eBooks
  3. Oxidative respiration through the bd -I and cbb 3 oxidases is required for Vibrio cholerae pathogenicity and proliferation in vivo
    Andrew J. Van Alst, Lucas M. Demey, Victor J. DiRita · 2021 · bioRxiv (Cold Spring Harbor Laboratory)
  4. Faculty Opinions recommendation of Infection-Induced Intestinal Dysbiosis Is Mediated by Macrophage Activation and Nitrate Production.
    David Cánovas · 2019 · Faculty Opinions – Post-Publication Peer Review of the Biomedical Literature
  5. Faculty Opinions recommendation of Precision editing of the gut microbiota ameliorates colitis.
    Sarah E. F. D’Orazio · 2018 · Faculty Opinions – Post-Publication Peer Review of the Biomedical Literature
  6. Impact of indigenous microbiota in gut inflammatory disorders
    Raquel Duque do Nascimento Arifa, Camila Bernardo de Brito, Rafaela R.A. Batista, Micheli Fagundes, Danielle G. Souza, Caio T. Fagundes · 2022 · Elsevier eBooks
  7. Partially hydrolyzed guar gum attenuates the symptoms of SARS-CoV-2 infection through gut microbiota modulation in an animal model
    Jiayue Yang, Isaiah Song, Misa Saito, Tenagy Hartanto, Takeshi Ichinohe, Shinji Fukuda · 2023 · bioRxiv (Cold Spring Harbor Laboratory)
  8. Insertion Sequence Driven Evolution of the Microbiota Revealed by a Novel Metagenomics Pipeline
    Joshua M. Kirsch, Andrew J. Hryckowian, Breck A. Duerkop · 2023 · SSRN Electronic Journal
  9. Perfil metabólico de mulheres sedentárias em diferentes faixas etárias e submetidas a sessões agudas de exercícios físicos distintos
    Joice Cristina dos Santos Trombeta · 2021
  10. Chronic Pm2.5 Exposure Disrupts Intestinal Barrier Integrity Via Microbial Dysbiosis-Triggered Tlr2/5-Myd88-Nlrp3 Inflammasome Activation
    Rui Li, Zihan Ran, Jingcheng Yang, Liang Liu, Shaobo Wu, Yanpeng An, Wanwan Hou, Tianyuan Cheng, Youyi Zhang, Yiqing Zhang et al. · 2024 · SSRN Electronic Journal
  11. Identification and Functional Characterization of Genomic Islands: Application to Pseudomonas aeruginosa PAO1
    Ronika De · 2024
  12. Seed-extracted mucilages: Galactomannan
    Jingrui Yang, Huizi Tan · 2025 · Elsevier eBooks
  13. Complex system modelling reveals oxalate homeostasis is driven by diverse oxalate-degrading bacteria
    Sromona Mukherjee, Carlos Batagello, Ava Adler, Jose Agudelo, Anna M. Zampini, Mangesh Vasant Suryavanshi, Andrew H. Nguyen, Teri J. Orr, M. Denise Dearing, Manoj Monga et al. · 2025 · eLife
  14. Unraveling the Role of Ctla-4 in Intestinal Immune Homeostasis: Insights from a novel Zebrafish Model of Inflammatory Bowel Disease
    Lulu Qin, Chongbin Hu, Qiong Zhao, Yong Wang, Dongdong Fan, Aifu Lin, Lixin Xiang, Ye Chen, Jian-zhong Shao · 2025 · eLife
  15. Complex system modelling reveals oxalate homeostasis is driven by diverse oxalate-degrading bacteria
    Sromona Mukherjee, Carlos Batagello, Ava Adler, Jose Agudelo, Anna M. Zampini, Mangesh Vasant Suryavanshi, Andrew H. Nguyen, Teri J. Orr, M. Denise Dearing, Manoj Monga et al. · 2025 · eLife
  16. Gut Microbiota's Role in Optimizing the Chicken Digestive System
    aymen Al-Alhially, Ahmed N. Flayyih · 2025 · Basrah Journal of veterinary Research
  17. D-glucaro-1,4-lactone alleviates acetaminophen-induced hepatotoxicity in mice via modulating gut microbiota and metabolites associated with Lactobacillus–glutamine and nicotinic acid pathways
    Zhiying Song, Yiran Pan, Zeyu Wang, Yujing Chen, Yufeng Deng, Lele Wang, Qi Hu, Wenxiang Huang, Shuilin Sun, Baogang Xie · 2025 · Frontiers in Pharmacology
  18. Fitness gene Characterization of Human Infant-Derived Commensal Escherichia coli LFYP5 in the Murine Gut
    Danyi Lu, Lihui Feng · 2025 · Current Microbiology
  19. Engineering Escherichia coli Nissle as safe chassis for delivery of therapeutic peptides
    Aarón Pantoja‐Angles, Zahir Ali, Sherin Abdelrahman, Cynthia Olivia Baldelamar-Juárez, Shahid Chaudhary, Misjudeen Raji, Luis F. Rivera, Lingyun Zhao, Charlotte A. E. Hauser, Magdy M. Mahfouz · 2025 · bioRxiv (Cold Spring Harbor Laboratory)
  20. Physicochemical characterization and enteroprotective activity of triple-helix Gleditsia seed polysaccharides prepared by the probiotic fermentation method
    Lu Yuan, Qikai Liu, Yuxuan Liang, Jian Qiu, Hongtao Lei, Huitian Cai, Xiaoqun Wei · 2025 · Food Chemistry
  21. Formate
    Mohaned Benzarti, Elisabeth Letellier, Johannes Meiser · 2025 · Trends in Endocrinology and Metabolism
  22. Intestinal metabolomics analysis reveals lysophosphatidylcholine is the key regulatory metabolite in mouse models of necrotizing enterocolitis
    Zhenglin Ou, Xin Wu, Wei Jiang · 2025 · Scientific Reports
  23. Trajectories of Short-Chain Fatty Acids and Risk of Adverse Kidney Outcomes in Type 2 Diabetes: A Prospective Cohort Study
    Hui-Ju Tsai, Ping-Shaou Yu, Wei‐Wen Hung, Ping‐Hsun Wu, Wei‐Chun Hung, Shang‐Jyh Hwang, Mei‐Chuan Kuo, Yi‐Chun Tsai · 2025 · Research Square
  24. Functional Shotgun Metagenomic Insights into Gut Microbial Pathway and Enzyme Disruptions Linking Metabolism, Affect, Cognition, and Suicidal Ideation in Major Depressive Disorder
    Michael H. J. Maes, Abbas Firras Almulla, Asara Vasupanrajit, Ketsupar Jirakran, Chavit Tunvirachaisakul, Annabel Maes, Prangwalai Chanchaem, Pavit Klomkliew, Sunchai Payungporn, Yingqian Zhang · 2025 · medRxiv
  25. Additional file 1 of Early-life gut dysbiosis linked to juvenile mortality in ostriches
    Elin Videvall, Song, Se Jin, Hanna M. Bensch, Maria Strandh, Engelbrecht, Anel, Naomi Serfontein, Olof Hellgren, Adriaan Olivier, Cloete, Schalk, Rob D. Knight et al. · 2020 · Figshare
  26. Additional file 2 of Utilizing a reductionist model to study host-microbe interactions in intestinal inflammation
    Amy M. Tsou, Jeremy A. Goettel, Bin Bao, Amlan Biswas, Yu Hui Kang, Naresh Singh Redhu, Peng, Kaiyue, Gregory Putzel, Jeffrey S. Saltzman, Kelly, Ryan et al. · 2021 · Figshare
  27. Additional file 5 of Early-life gut dysbiosis linked to juvenile mortality in ostriches
    Elin Videvall, Song, Se Jin, Hanna M. Bensch, Maria Strandh, Engelbrecht, Anel, Naomi Serfontein, Olof Hellgren, Adriaan Olivier, Cloete, Schalk, Rob D. Knight et al. · 2020 · Figshare
  28. Additional file 1 of Multi-proxy analyses of a mid-15th century Middle Iron Age Bantu-speaker palaeo-faecal specimen elucidates the configuration of the ‘ancestral’ sub-Saharan African intestinal microbiome
    Riaan F. Rifkin, Surendra Vikram, Ramond, Jean-Baptiste, Alba Rey‐Iglesia, Tina B. Brand, Guillaume Porraz, Aurore Val, Grant Hall, Woodborne, Stephan, Matthieu Le Bailly et al. · 2020 · Figshare
  29. Additional file 1 of Irinotecan-gut microbiota interactions and the capability of probiotics to mitigate Irinotecan-associated toxicity
    Marwa S. Mahdy, Azmy, Ahmed F., Tarek Dishisha, Wafaa R. Mohamed, Ahmed, Kawkab A., Hassan, Ahmed, Sahar El Aidy, El-Gendy, Ahmed O. · 2023 · Figshare
  30. Additional file 1 of Colonocyte-derived lactate promotes E. coli fitness in the context of inflammation-associated gut microbiota dysbiosis
    Taylor, Savannah J., Maria G. Winter, Caroline C. Gillis, Silva, Laice Alves da, Amanda Lee Dobbins, Matthew K. Muramatsu, Angel G. Jimenez, Rachael B. Chanin, Luisella Spiga, Ernesto M. Llano et al. · 2022 · Figshare
  31. Computational Assessment of Lactobacillus helveticus and Bifidobacterium longum Metabolites for Perinatal Depression Therapy
    Oumaima Anachad, Wafaa Taha, Chaimaa Saadoune, Houssam Assioui, Imad Fenjar, Imane Thaifa, Faïza Bennis, Fatima Chegdani · 2026 · Bacteria
  32. Sex- and mouse strain-related differences in body weight gain, composition of the gut microbiota, and levels of selected metabolites in response to a Western-style diet
    Katarzyna Unrug-Bielawska, Monika Dziełak, Zuzanna Sandowska-Markiewicz, Magdalena Piątkowska, Paweł Czarnowski, Krzysztof Goryca, Natalia Żeber‐Lubecka, Michalina Dąbrowska, Aneta Bałabas, Małgorzata Statkiewicz et al. · 2026 · BMC Gastroenterology
  33. Genomic association of Campylobacter concisus for colonization advantages and virulence in children and adolescents with inflammatory bowel disease
    Stefan Neuenschwander, Carlo Casanova, Nicole Liechti, Susanne Schibli, Alban Ramette, Christiane Sokollik · 2026 · BMC Microbiology
  34. La signalisation insuline comme garant de la fonction barrière intestinale
    Dalale Gueddouri · 2021 · theses.fr (ABES)
  35. Optimisation de la respiration du nitrate à travers l'organisation de ses acteurs
    Suzy Bulot · 2019
  36. Les cellules MAIT et la riboflavine dans les interactions hôte-microbiote
    Yara El Morr · 2021
  37. Exploring the metabolic mechanisms used by Enterobacteriaceae to thrive in the dysbiotic gut of patients suffering from intestinal or extra-intestinal inflammatory diseases
    Maria Ines Moreira de Gouveia · 2022 · theses.fr (ABES)
  38. Etudes des voies de biosynthèse de l’ubiquinone chez les protéobactéries
    Katayoun Kazemzadeh · 2023 · theses.fr (ABES)
  39. Evidence for a shift towards a proinflammatory/pronociceptive signature of gut dysbiosis in patients with axial chronic low back pain: A preliminary cross-sectional analysis
    Anitha Saravanan, Jinbing Bai, Prempreet Bajaj, Mark Khemmani, Adriana Rodriguez, Sonali Choudhury, Alan J. Wolfe, Erin E. Young · 2026 · Journal of Pain
  40. Identification of novel enolase negative Segatella copri subspecies supports notion of Segatella copri speciation via alternative phosphoenolpyruvate synthesis pathways
    Luke M. Bosnar, Steve Petrovski, Anya E. Shindler, Ashley Edwin Franks · 2026 · bioRxiv (Cold Spring Harbor Laboratory)
  41. Mixed acid fermentation products from Lachnospira eligens counteract myotube atrophy
    Sophie Lecop, Edwige Piron, Audrey M. Neyrinck, Axelle E. Loriot, Sarah A. Pötgens, Raphaël Helaers, Amandine Jacquet, Pauline Morigny, Eleonora Scorletti, Josh Bilson et al. · 2026 · bioRxiv (Cold Spring Harbor Laboratory)
  42. A comparative evaluation of new prebiotic candidates. Part 2: In vitro assays using faecal inoculum from IBD patients
    Sergio Martínez-Gómez, Joana Sousa, Ana Cordeiro, Sónia G. Barbosa, Ricardo Franco‐Duarte, Ana C. Pinheiro, Ligia R. Rodrigues, Sara C. Silvério, Remedios Yáñez, José L. Alonso · 2026 · Food Research International
  43. A polymer that reinforces luminal barrier function and attenuates inflammation in murine colitis
    Luiz Fernando Würdig Roesch, Jessica Xhumari, Ariana M. Tamura, Amanda E. Ojeda, Oluwamayowa Akinsuyi, Diego Ivan Pedro, Christian Jobin, Ye Yang, Francesco Pinto Boeno, Orlando Laitano et al. · 2026 · Research Square
  44. Pyruvate-formate lyase-derived formate regulates the response of Salmonella Typhimurium to meropenem and ciprofloxacin
    Debapriya Mukherjee, Sakshi Vasant Wagle, Pallab Ghosh, Abhishek Biswas, Dipshikha Chakravortty · 2026 · Cell Reports
  45. Epithelial brush border as a gatekeeper for gut barrier integrity and microbiota eubiosis
    Yu-Chen Pai, Yi-Hsuan Li, Linda Chia-Hui Yu · 2026 · Elsevier eBooks
  46. Metabolic strategies of Enterobacteriaceae gut colonization
    Christopher Schubert, Wolf‐Dietrich Hardt · 2026 · Nature Reviews Microbiology
  47. Salmonella lipopolysaccharide stimulates uptake of long-chain fatty acids in the small intestine
    Eugene Koo, Gabriella M. Quinn, Cassie L. Behrendt, Brian Hassell, Katie N. Kang, Kelly A. Ruhn, Goncalo Dias do Vale, Jeffrey G. McDonald, Wenhan Zhu, Sebastian Winter et al. · 2026 · Proceedings of the National Academy of Sciences
  48. The hidden cost of antibiotics: microbial dysbiosis-induced SCFA imbalance and its underlying mechanisms
    Sona R. Ayvazyan, Olga V. Darvina, Klavdiya A. Turkadze, Sergey G. Gerasimov, Каншина Нина Николаевна · 2026 · Frontiers in Immunology
  49. Microbial-derived exerkines as a model of drug discovery
    Benjamin I. Burke, Taylor R. Valentino, Ahmed Ismaeel, Yuan Wen, John Joseph McCarthy · 2026 · American Journal of Physiology-Cell Physiology
  50. Effects of Dietary Allicin Supplementation on Laying Performance, Egg Quality, Serum Lipid Indices, and Gut Microbiota Composition in Kangle Chickens
    Qingcan Fan, Jinsheng Yang, Manyan Chen, Wenbo Yan, Haigen Li, Lucheng Zheng, Wei Hu, Hu Yang, Ben Liu, Qianqian Wang · 2026 · Animals
  51. Engineering Escherichia coli Nissle as a Safe Chassis for the Production of Therapeutic Peptides
    Aarón Pantoja‐Angles, Zahir Ali, Sherin Abdelrahman, Cynthia Olivia Baldelamar-Juárez, Shahid Chaudhary, Misjudeen A. Raji, Luis Fernando Rivera-Serna, Lingyun Zhao, Charlotte A. E. Hauser, Magdy M. Mahfouz · 2026 · ACS Synthetic Biology
  52. Considering evolved heat tolerance helps predict the immunological consequences of climate change
    Jordan M. Lucore, Andrew J. Marshall · 2026 · Seminars in Immunopathology
  53. Klebsiella-dominant gut communities are associated with impeded oral rotavirus vaccine response in infants
    Cale O. Seymour, Gertrude Ecklu-Mensah, Yesun Lee, Alexander R. Nicols, Wesley A. Cheng, Jaycee M. Jumarang, Carolyn Jennifer Marentes Ruiz, Jocelyn Navarro, Rafaella Navarro, Yamile Rodríguez Angeles et al. · 2026 · Nature Communications