The DOI matches its Crossref record; 1 of the 1 references it cites were found in a registry or an index.
Autorepression of yeast Hsp70 cochaperones by intramolecular interactions involving their J-domains
Open accessPublished version of a preprint
Abstract
Abstract The Hsp70 chaperones control protein homeostasis in all ATP-containing cellular compartments. J-domain proteins (JDPs) co-evolved with Hsp70s to trigger ATP-hydrolysis and catalytically upload various substrate polypeptides in need to be structurally modified by the chaperone. Here, we measured the protein disaggregation and refolding activities of the main yeast cytosolic Hsp70, Ssa1, in the presence of its most abundant JDPs, Sis1 and Ydj1, and two swap mutants, in which the J-domains have been interchanged. The observed differences by which the four constructs differently cooperate with Ssa1 and cooperate with each other, as well as their observed intrinsic ability to bind misfolded substrates and trigger Ssa1’s ATPase, indicates the presence of yet uncharacterized intra-molecular dynamic interactions between the J-domains and their remaining C-terminal domains. Taken together, the data suggest an auto-regulatory role to these intra-molecular interactions within both type A and B JDPs, which might have evolved to reduce energy-costly ATPase cycles by the Ssa1-4 chaperones that are the most abundant Hsp70s in the yeast cytosol. Graphical abstract: Lower panel: autoinhibited DnaJA or DnaJB dimers, drawn here as Swiss army knives with sequestered J-domains as folded blades, can bind misfolded polypeptides (violet). Upper panel: DnaJA or DnaJB become active when their J-domains are exposed and can bind ATP-Hsp70s, and transfer the misfolded polypeptides, respectively, onto Hsp70’s nucleotide binding (Cyan) and protein binding domains (Orange and Green). Hsp70’s interdomain linker (DLLLLDV, Magenta).
Overview
The claims and statistics of this paper haven’t been checked yet.
Run the check — free, no account needed. It reads the open-access text and checks the sources it cites.
Integrity signals
Registry
Cites
Statistics
Verification
Claims the paper makes
The claims and statistics of this paper haven’t been checked yet.
Run the check — free, no account needed. It reads the open-access text and checks the sources it cites.
Self-check
Percentages, sums and reported differences re-computed from the paper’s own numbers.
The self-check needs the paper’s full text.
Citations
Cites
Highly accurate protein structure prediction with AlphaFold
Jumper, J., Evans, R., Pritzel, A., Green, T., Figurnov, M., Ronneberger, O., Tunyasuvunakool, K., Bates, R., Žídek, A., Potapenko, A., et al. (2021) · Nature · doi:10.1038/s41586-021-03819-2 · Cited by 43,764
Flagged first, then by citations
Research works printed but not linked: 51
- Fauvet, 2021, Repair or degrade: the thermodynamic dilemma of cellular protein quality-control, Front Mol Biosci, 8, 10.3389/fmolb.2021.768888 · DOI
- Sweeney, 2017, Protein misfolding in neurodegenerative diseases: implications and strategies, Transl Neurodegener, 6, 6, 10.1186/s40035-017-0077-5 · DOI · Paper page
- Rebeaud, 2021, On the evolution of chaperones and cochaperones and the expansion of proteomes across the Tree of Life, Proc Natl Acad Sci, 118, 10.1073/pnas.2020885118 · DOI
- Goloubinoff, 2018, Chaperones convert the energy from ATP into the nonequilibrium stabilization of native proteins, Nat Chem Biol, 14, 388, 10.1038/s41589-018-0013-8 · DOI
- Zhang, 2023, J-domain protein chaperone circuits in proteostasis and disease, Trends Cell Biol, 33, 30, 10.1016/j.tcb.2022.05.004 · DOI
- Kampinga, 2010, The HSP70 chaperone machinery: J proteins as drivers of functional specificity, Nat Rev Mol Cell Biol, 11, 579, 10.1038/nrm2941 · DOI
- Marszalek, 2024, J-domain proteins: From molecular mechanisms to diseases, Cell Stress Chaperones, 29, 21, 10.1016/j.cstres.2023.12.002 · DOI
- Mayer, 2015, Insights into the molecular mechanism of allostery in Hsp70s, Front Mol Biosci, 2, 58, 10.3389/fmolb.2015.00058 · DOI
- Kampinga, 2019, Function, evolution, and structure of J-domain proteins, Cell Stress Chaperones, 24, 7, 10.1007/s12192-018-0948-4 · DOI
- Kityk, 2018, Molecular mechanism of J-domain-triggered ATP hydrolysis by Hsp70 chaperones, Mol Cell, 69, 227, 10.1016/j.molcel.2017.12.003 · DOI
- Russell, 1999, DnaJ dramatically stimulates ATP hydrolysis by DnaK: insight into targeting of Hsp70 proteins to polypeptide substrates, Biochemistry, 38, 4165, 10.1021/bi9824036 · DOI
- Han, 2004, cis-Effect of DnaJ on DnaK in ternary complexes with chimeric DnaK/DnaJ-binding peptides, FEBS Lett, 563, 146, 10.1016/S0014-5793(04)00290-X · DOI
- De Los Rios, 2014, Hsp70 chaperones are non-equilibrium machines that achieve ultra-affinity by energy consumption, Elife, 3, 10.7554/eLife.02218 · DOI
- Yu, 2015, Roles of intramolecular and intermolecular interactions in functional regulation of the Hsp70 J-protein co-chaperone Sis1, J Mol Biol, 427, 1632, 10.1016/j.jmb.2015.02.007 · DOI
- Yan, 1999, The glycine-phenylalanine-rich region determines the specificity of the yeast Hsp40 Sis1, Mol Cell Biol, 19, 7751, 10.1128/MCB.19.11.7751 · DOI
- Faust, 2020, HSP40 proteins use class-specific regulation to drive HSP70 functional diversity, Nature, 587, 489, 10.1038/s41586-020-2906-4 · DOI
- Fan, 2004, Exchangeable chaperone modules contribute to specification of type I and type II Hsp40 cellular function, Mol Biol Cell, 15, 761, 10.1091/mbc.e03-03-0146 · DOI
- Johnson, 2022, Two distinct classes of cochaperones compete for the EEVD motif in heat shock protein 70 to tune its chaperone activities, J Biol Chem, 298, 10.1016/j.jbc.2022.101697 · DOI
- Jiang, 2019, Structural basis for client recognition and activity of Hsp40 chaperones, Science, 365, 1313, 10.1126/science.aax1280 · DOI
- Wyszkowski, 2021, Class-specific interactions between Sis1 J-domain protein and Hsp70 chaperone potentiate disaggregation of misfolded proteins, Proc Natl Acad Sci USA, 118, 10.1073/pnas.2108163118 · DOI
- Kumar, 2024, Yeast J-protein Sis1 prevents prion toxicity by moderating depletion of prion protein, Genetics, 23
- Cajo, 2006, The role of the DIF motif of the DnaJ (Hsp40) co-chaperone in the regulation of the DnaK (Hsp70) chaperone cycle, J Biol Chem, 281, 12436, 10.1074/jbc.M511192200 · DOI
- Wall, 1995, The conserved G/F motif of the DnaJ chaperone is necessary for the activation of the substrate binding properties of the DnaK chaperone, J Biol Chem, 270, 2139, 10.1074/jbc.270.5.2139 · DOI
- Karamanos, 2019, Unraveling the structure and dynamics of the human DNAJB6b chaperone by NMR reveals insights into Hsp40-mediated proteostasis, Proc Natl Acad Sci, 116, 21529, 10.1073/pnas.1914999116 · DOI
- Ryder, 2021, Regulatory inter-domain interactions influence Hsp70 recruitment to the DnaJB8 chaperone, Nat Commun, 12, 946, 10.1038/s41467-021-21147-x · DOI
- Nillegoda, 2015, Crucial HSP70 co-chaperone complex unlocks metazoan protein disaggregation, Nature, 524, 247, 10.1038/nature14884 · DOI
- Schilke, 2017, Broadening the functionality of a J-protein/Hsp70 molecular chaperone system, PLoS Genet, 13, 10.1371/journal.pgen.1007084 · DOI
- Johnson, 2001, An essential role for the substrate-binding region of Hsp40s in Saccharomyces cerevisiae, J Cell Biol, 152, 851, 10.1083/jcb.152.4.851 · DOI
- Shorter, 2011, The mammalian disaggregase machinery: Hsp110 synergizes with Hsp70 and Hsp40 to catalyze protein disaggregation and reactivation in a cell-free system, PLoS One, 6, 10.1371/journal.pone.0026319 · DOI
- Tiwari, 2023, A fluorescent multi-domain protein reveals the unfolding mechanism of Hsp70, Nat Chem Biol, 19, 198, 10.1038/s41589-022-01162-9 · DOI
- Cho, 2021, J-domain proteins promote client relay from Hsp70 during tail-anchored membrane protein targeting, J Biol Chem, 296, 10.1016/j.jbc.2021.100546 · DOI
- Yu, 2015, Functionality of Class A and Class B J-protein co-chaperones with Hsp70, FEBS Lett, 589, 2825, 10.1016/j.febslet.2015.07.040 · DOI
- Lu, 1998, Protein folding activity of Hsp70 is modified differentially by the hsp40 co-chaperones Sis1 and Ydj1, J Biol Chem, 273, 27824, 10.1074/jbc.273.43.27824 · DOI
- Laufen, 1999, Mechanism of regulation of hsp70 chaperones by DnaJ cochaperones, Proc Natl Acad Sci USA, 96, 5452, 10.1073/pnas.96.10.5452 · DOI
- Mackenzie, 2016, Absolute protein quantification of the yeast chaperome under conditions of heat shock, Proteomics, 16, 2128, 10.1002/pmic.201500503 · DOI
- Ghaemmaghami, 2003, Global analysis of protein expression in yeast, Nature, 425, 737, 10.1038/nature02046 · DOI · Paper page
- Lawless, 2016, Direct and absolute quantification of over 1800 yeast proteins via selected reaction monitoring, Mol Cell Proteom, 15, 1309, 10.1074/mcp.M115.054288 · DOI
- Fauvet, 2021, Bacterial Hsp90 facilitates the degradation of aggregation-prone Hsp70-Hsp40 substrates, Front Mol Biosci, 8, 10.3389/fmolb.2021.653073 · DOI
- UniProt, 2015, UniProt: a hub for protein information, Nucleic Acids Res, 43, D204, 10.1093/nar/gku989 · DOI · Paper page
- Leitner, 2014, Chemical cross-linking/mass spectrometry targeting acidic residues in proteins and protein complexes, Proc Natl Acad Sci, 111, 9455, 10.1073/pnas.1320298111 · DOI
- Manalastas-Cantos, 2024, Modeling flexible protein structure with AlphaFold2 and crosslinking mass spectrometry, Mol Cell Proteom, 23, 10.1016/j.mcpro.2024.100724 · DOI
- Malinovska, 2023, Proteome-wide structural changes measured with limited proteolysis-mass spectrometry: an advanced protocol for high-throughput applications, Nat Protoc, 18, 659, 10.1038/s41596-022-00771-x · DOI
- Schopper, 2017, Measuring protein structural changes on a proteome-wide scale using limited proteolysis-coupled mass spectrometry, Nat Protoc, 12, 2391, 10.1038/nprot.2017.100 · DOI
- Velasco-Carneros, 2023, The self-association equilibrium of DNAJA2 regulates its interaction with unfolded substrate proteins and with Hsc70, Nat Commun, 14, 5436, 10.1038/s41467-023-41150-8 · DOI
- Bischofberger, 2003, d-Peptides as inhibitors of the DnaK/DnaJ/GrpE chaperone system, J Biol Chem, 278, 19044, 10.1074/jbc.M300922200 · DOI
- Sharma, 2010, The kinetic parameters and energy cost of the Hsp70 chaperone as a polypeptide unfoldase, Nat Chem Biol, 6, 914, 10.1038/nchembio.455 · DOI
- Mattoo, 2014, Synergism between a foldase and an unfoldase: reciprocal dependence between the thioredoxin-like activity of DnaJ and the polypeptide-unfolding activity of DnaK, Front Mol Biosci, 1, 7, 10.3389/fmolb.2014.00007 · DOI
- Lee, 2019, Cryo-EM structures of the Hsp104 protein disaggregase captured in the ATP conformation, Cell Rep, 26, 29, 10.1016/j.celrep.2018.12.037 · DOI
- Fritz, 2013, A versatile toolkit to produce sensitive FRET biosensors to visualize signaling in time and space, Sci Signal, 6, rs12, 10.1126/scisignal.2004135 · DOI
- Wood, 2018, A biosensor-based framework to measure latent proteostasis capacity, Nat Commun, 9, 287, 10.1038/s41467-017-02562-5 · DOI
- Meng, 2023, UCSF ChimeraX: tools for structure building and analysis, Protein Sci, 32, e4792, 10.1002/pro.4792 · DOI
Metadata
- Authors
- Rebeaud, M. E., Tiwari, S., Fauvet, B., Mohr, A., Goloubinoff, P., & De Los Rios, P.
- Affiliations
- École Polytechnique Fédérale de Lausanne (CH)
- University of Lausanne (CH)
- Corresponding author
- Goloubinoff, Pierre
- Venue
- Cell Stress and Chaperones
- Publisher
- Elsevier BV
- Published
- 2024-04
- Volume
- 29
- Issue
- 2
- Pages
- 338-348
- ISSN
- 1355-8145 (ISSN-L)
- PMC
- PMC10999819
- OpenAlex
- W4393058061
- Cited by
- 6
- References
- 1
- Citations by year
- 2026: 1 · 2025: 5
- FWCI
- 0.82
- Type
- journal article
- Language
- en
- Open access
- gold
- doi.org
- Licence
- Locations
- Cell Stress and Chaperones (publishedVersion, cc-by-nc-nd)
- bioRxiv (Cold Spring Harbor Laboratory) (acceptedVersion, cc-by-nc-nd)
- PubMed Central (publishedVersion, cc-by-nc-nd)
- PubMed (publishedVersion)
- SERVAL (Université de Lausanne) (publishedVersion, cc-by-nc-nd)
- IRIS (submittedVersion, cc-by-nc-nd)
- Infoscience (Ecole Polytechnique Fédérale de Lausanne) (submittedVersion, cc-by-nc-nd)
- Funders
- Schweizerischer Nationalfonds zur Förderung der wissenschaftlichen Forschung (31003A_175453)
- Topics
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › Heat shock proteins research
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › Ubiquitin and proteasome pathways
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › Protein Structure and Dynamics
- Keywords
- Hsp70 chaperones, Hsp40, autorepression, intramolecular interactions, Ssa1, Sis1, Ydj1, protein disaggregation, protein refolding, ATPase activation, ATP hydrolysis, proteostasis
- MeSH terms
- Adenosine Triphosphatases, Adenosine Triphosphate, Protein Binding, Saccharomyces cerevisiae, Molecular Chaperones, HSP70 Heat-Shock Proteins, Saccharomyces cerevisiae Proteins, HSP40 Heat-Shock Proteins
About these checks
Registry, retraction, Cites and statistics results are computed, not judged, with one exception: a printed reference that no index lists is read once by a model before it counts as a citation error. Claims are extracted by a model and kept only when their quote appears verbatim in the text; each cited source is then checked, with a model’s help, for whether it says what the claim relies on. Those verdicts can be wrong — read the claim’s quote and the cited source before relying on one.
Statistics and arithmetic are recomputed, not judged.
Confidence bands are shown only for fields calibrated on our annotated test set. None is calibrated yet, so no band is shown.
What counts as a claim ›How we measure confidence ›How we check this ›
Are you an author, or do you see a problem with this page? Request a review