The DOI matches its Crossref record; 12 of the 12 references it cites were found in a registry or an index.
The Interrelationships of Land Plants and the Nature of the Ancestral Embryophyte
Open accessAbstract
The evolutionary emergence of land plant body plans transformed the planet. However, our understanding of this formative episode is mired in the uncertainty associated with the phylogenetic relationships among bryophytes (hornworts, liverworts, and mosses) and tracheophytes (vascular plants). Here we attempt to clarify this problem by analyzing a large transcriptomic dataset with models that allow for compositional heterogeneity between sites. Zygnematophyceae is resolved as sister to land plants, but we obtain several distinct relationships between bryophytes and tracheophytes. Concatenated sequence analyses that can explicitly accommodate site-specific compositional heterogeneity give more support for a mosses-liverworts clade, "Setaphyta," as the sister to all other land plants, and weak support for hornworts as the sister to all other land plants. Bryophyte monophyly is supported by gene concatenation analyses using models explicitly accommodating lineage-specific compositional heterogeneity and analyses of gene trees. Both maximum-likelihood analyses that compare the fit of each gene tree to proposed species trees and Bayesian supertree estimation based on gene trees support bryophyte monophyly. Of the 15 distinct rooted relationships for embryophytes, we reject all but three hypotheses, which differ only in the position of hornworts. Our results imply that the ancestral embryophyte was more complex than has been envisaged based on topologies recognizing liverworts as the sister lineage to all other embryophytes. This requires many phenotypic character losses and transformations in the liverwort lineage, diminishes inconsistency between phylogeny and the fossil record, and prompts re-evaluation of the phylogenetic affinity of early land plant fossils, the majority of which are considered stem tracheophytes.
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Cites
Multiple Comparisons of Log-Likelihoods with Applications to Phylogenetic Inference
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“[7] (Hornwort, ((Liverwort, Moss), Tracheophyta)) Coleochaetales nuclear rDNA Hedderson et al.”
BackgroundMethodResultInfluentialThe Rise of Plants and Their Effect on Weathering and Atmospheric CO 2
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Genomic data do not support comb jellies as the sister group to all other animals
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“, [32, 33]), but, at present, it is unable to definitively resolve early land plant relationships (Figure 4).”
BackgroundSelf-citationTrichomonas hydrogenosomes contain the NADH dehydrogenase module of mitochondrial complex I
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Statistical binning enables an accurate coalescent-based estimation of the avian tree
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Genome-wide interrogation advances resolution of recalcitrant groups in the tree of life
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“Furthermore, modeling of compositional heterogeneity between sites may not be sufficiently complex to resolve land plant relationships, as it will not capture compositional heterogeneity among lineages [24] or non-reversibility in sequence evolution [34].”
Self-citation
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One thousand plant transcriptomes and the phylogenomics of green plants
Initiative, O. T. P. T. (2019) · Nature · doi:10.1038/s41586-019-1693-2 · Cited by 1,734
Harris, B. J., Clark, J. W., Schrempf, D., Szöllősi, G. J., Donoghue, P. C. J., Hetherington, A. M., & Williams, T. A. (2022) · Nature Ecology & Evolution · doi:10.1038/s41559-022-01885-x · Cited by 187
Self-citationRevisiting the Great Ordovician Diversification of land plants: Recent data and perspectives
Servais, T., Cascales-Miñana, B., Cleal, C. J., Gerrienne, P., Harper, D. A. T., & Neumann, M. (2019) · Palaeogeography, Palaeoclimatology, Palaeoecology · doi:10.1016/j.palaeo.2019.109280 · Cited by 77
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Metadata
- Authors
- Puttick, M. N., Morris, J. L., Williams, T. A., Cox, C. J., Edwards, D., Kenrick, P., Pressel, S., Wellman, C. H., Schneider, H., Pisani, D., & Donoghue, P. C. J.
- Venue
- Current Biology
- Publisher
- Elsevier BV
- Published
- 2018-03
- Volume
- 28
- Issue
- 5
- Pages
- 733-745.e2
- ISSN
- 0960-9822 (ISSN-L)
- OpenAlex
- W2787651215
- Cited by
- 498
- References
- 12
- FWCI
- 49.24
- Type
- journal article
- Language
- en
- Open access
- hybrid
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- Puttick, M. N., Morris, J. L., Williams, T. A., Cox, C. J., Edwards, D., Kenrick, P., Pressel, S., Wellman, C. H., Schneider, H., Pisani, D., & Donoghue, P. C. J. (2018). The Interrelationships of Land Plants and the Nature of the Ancestral Embryophyte. Current Biology. https://doi.org/10.1016/j.cub.2018.01.063
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