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The many roles of molecular complexity in drug discovery
Abstract
Molecular complexity is becoming a crucial concept in drug discovery. It has been associated with target selectivity, success in progressing into clinical development and compound safety, among other factors. Multiple metrics have been developed to quantify molecular complexity and explore complexity-property relationships. However, there is no general agreement regarding how to measure this molecular feature. Herein, we have surveyed the many roles of molecular complexity in drug discovery discussing in a critical manner different quantification methods. Through the analysis of various reference compound databases, common pitfalls and workarounds of the quantification of molecular complexity are discussed.
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Victoria-Muñoz, F., Sánchez‐Cruz, N., Medina‐Franco, J. L., & López-Vallejo, F. (2022) · RSC Advances · doi:10.1039/d1ra08352j · Cited by 8
“For this study, the fractions of sp(3) atoms (Fsp(3)) and chiral centers (FCC) were used as complexity metrics based on topological and physicochemical descriptors [28].”
MethodSelf-citationHarnessing C–O Bonds in Stereoselective Cross-Coupling and Cross-Electrophile Coupling Reactions
Jarvo, E. R., & Sanford, A. B. (2020) · Synlett · doi:10.1055/s-0040-1705987 · Cited by 8
Phosphine ligands in the ruthenium-catalyzed reductive amination without an external hydrogen source
Makarova, M., Afanasyev, O. I., Kliuev, F. S., Nelyubina, Y. V., Godovikova, M. I., & Chusov, D. A. (2021) · Journal of Organometallic Chemistry · doi:10.1016/j.jorganchem.2021.121806 · Cited by 8
Measuring Molecular Complexity
Slocombe, L., & Walker, S. I. (2024) · ACS Central Science · doi:10.1021/acscentsci.4c00697 · Cited by 8
Yaremenko, I. A., Belyakova, Y. Y., Radulov, P. S., Medvedev, M. G., Krivoshchapov, N. V., Alabugin, I. V., & Terent'ev, A. O. (2023) · The Journal of Organic Chemistry · doi:10.1021/acs.joc.3c01415 · Cited by 7
Chemoinformatic Characterization of NAPROC-13: A Database for Natural Product 13 C NMR Dereplication
Avellaneda-Tamayo, J. F., Agudo-Muñoz, N. A., Sánchez-Galán, J. E., López‐Pérez, J. L., & Medina‐Franco, J. L. (2024) · Journal of Natural Products · doi:10.1021/acs.jnatprod.4c00530 · Cited by 7
Self-citationCopper(I)-Catalyzed Skeletal Rearrangement-Driven Cycloisomerization of 1,11-Diynes
Zhang, J.-Q., Li, Q., Chen, S.-L., Li, H., Chen, C., Zhong, X., & Mo, D. (2025) · Organic Letters · doi:10.1021/acs.orglett.5c02326 · Cited by 7
Broad assessment of bioactivity of a collection of spiroindane pyrrolidines through “cell painting”
Singh, M. P., Garza, N., Pearson, Z., Douglas, J. T., & Bošković, Ž. (2020) · Bioorganic & Medicinal Chemistry · doi:10.1016/j.bmc.2020.115547 · Cited by 8
Itoh, K., Ishii, N., Takashino, A., Hara, A., Kon, S., Mizuguchi, T., Karaki, F., Hirayama, S., Shibagaki, Y., Nagai, K., et al. (2022) · Journal of Photochemistry and Photobiology A Chemistry · doi:10.1016/j.jphotochem.2022.114239 · Cited by 7
Classification of some chemical drugs by genetic algorithm and deep neural network hybrid method
Karakaplan, M., & Avcu, F. M. (2021) · Concurrency and Computation Practice and Experience · doi:10.1002/cpe.6242 · Cited by 6
“16 Although both sets of ligands, agonists and antagonists, bind to the same region of the receptor, they occupy partially different binding pockets.”
BackgroundLi, Z. J., Lu, Y., Wang, R., Dong, X., Chen, P., Duan, J., Shi, M., Wang, L., & Liu, Y. (2024) · Journal of Pharmaceutical Sciences · doi:10.1016/j.xphs.2024.10.045 · Cited by 6
Contributions of African Medicinal Plants to Modern Drug Discovery
Babandi, A. (2025) · Interdisciplinary biotechnological advances · doi:10.1007/978-981-96-8590-5_16 · Cited by 7
Xu, L. B., Zhong, Q., Zhou, Y., Liu, R., Sun, X., Liu, X.-Y., Qin, Y., & Song, H. (2025) · Organic Chemistry Frontiers · doi:10.1039/d5qo01029b · Cited by 6
Metadata
- Authors
- Méndez-Lucio, O., & Medina-Franco, J. L.
- Venue
- Drug Discovery Today
- Publisher
- Elsevier BV
- Published
- 2017-01
- Volume
- 22
- Issue
- 1
- Pages
- 120-126
- ISSN
- 1359-6446 (ISSN-L)
- OpenAlex
- W2516032265
- Cited by
- 180
- References
- 45
- Citations by year
- 2026: 14 · 2025: 19 · 2024: 32 · 2023: 20 · 2022: 24 · 2021: 20 · 2020: 19 · 2019: 11 · 2018: 11 · 2017: 9
- FWCI
- 0.82
- Type
- journal article
- Language
- en
- Open access
- closed
- Locations
- Drug Discovery Today (publishedVersion)
- PubMed (publishedVersion)
- Topics
- Life Sciences › Pharmacology, Toxicology and Pharmaceutics › Drug Discovery › Computational Drug Discovery Methods
- Physical Sciences › Chemistry › Organic Chemistry › Synthesis and Characterization of Heterocyclic Compounds
- Social Sciences › Arts and Humanities › History and Philosophy of Science › History and advancements in chemistry
- Keywords
- molecular complexity, complexity measures, drug discovery, target selectivity
- MeSH terms
- Pharmaceutical Preparations, Models, Chemical, Structure-Activity Relationship, Drug Design, Molecular Structure, Databases, Factual, Drug Discovery
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