Cited by 156Microbial Community Ecology and PhysiologyGeochemistry and Elemental AnalysisMetal Extraction and Bioleaching

The DOI matches its Crossref record; 1 of the 1 references it cites were found in a registry or an index.

Quantifying inorganic sources of geochemical energy in hydrothermal ecosystems, Yellowstone National Park, USA

Overview

Integrity signals

Registry

Crossref · 10.1016/j.gca.2009.08.036

Cites

1 of 1 references verified0 citation errors · 0 not checkable

Statistics

Recomputing p-values needs the paper’s full text.

Verification

Claims the paper makes

We couldn’t retrieve this paper’s full text, so its claims and self-check weren’t run. The registry and citation checks still apply.

Claims other papers make about this one

Each is checked against this paper’s own text: does it say what the citing paper says it does?

  • Energy supply is mediated by the thermodynamics and kinetics of available redox reactions.

    “In this conceptual model, the generation of energy supply is mediated by the thermodynamics and kinetics of available redox reactions, and much work has been done to understand the impact of other environmental constraints (Amend et al., 2003; Shock et al., 2010).”

    From The Astrobiology Primer v2.0 (2016) · cites this paper as Shock et al., 2010

Citations

Cites

Flagged first, then by citations

Research works printed but not linked: 215

  1. Adams, 2008, Phosphorous deprivation responses and phosphonate utilization in a thermophilic Synechococcus sp. from microbial mats, J. Bacteriol., 190, 8171, 10.1128/JB.01011-08 · DOI
  2. Allewalt, 2006, Effect of temperature and light on growth of and photosynthesis by Synechococcus isolates typical of those predominating in the Octopus Spring microbial mat community of Yellowstone National Park, Appl. Environ. Microbiol., 72, 544, 10.1128/AEM.72.1.544-550.2006 · DOI
  3. Amend, 2001, Energetics of overall metabolic reactions in thermophilic and hyperthermophilic Archaea and bacteria, FEMS Microbiol. Rev., 25, 175, 10.1111/j.1574-6976.2001.tb00576.x · DOI
  4. Amend, 2003, Energetics of chemolithoautotrophy in the hydrothermal system of Vulcano Island, southern Italy, Geobiology, 1, 37, 10.1046/j.1472-4669.2003.00006.x · DOI · Paper page
  5. Balistrieri L. S., Shanks III W. C., Cuhel R. L., Aguilar, C., and Klump, J. V. (2007). The influence of sublacustrine hydrothermal vent fluids on the geochemistry of Yellowstone Lake. In Integrated geoscience studies in the greater Yellowstone area – Volcanic, tectonic and hydrothermal processes in the Yellowstone geoecosystem (ed. L. A. Morgan). US Geological Survey Paper, vol. 1717, pp. 173–199.
  6. Ball, 1998, Chemical analyses of hot springs, pools, geysers and surface waters from Yellowstone National Park, Wyoming, and vicinity, 1974–1975, USGS Open File Rep., OF 98–183, 45
  7. Ball, 1998, Water–chemical and on-site sulfur-speciation data for selected springs in Yellowstone National Park, Wyoming 1994–1995, USGS Open File Rep., OF 98–574, 35
  8. Ball, 2001, Water–chemical and on-site sulfur-speciation data for selected springs in Yellowstone National Park, Wyoming, 1996–1998, USGS Open File Rep., OF 98–574, 35
  9. Ball, 2002, Water–chemistry data for selected springs, geysers and streams in Yellowstone National Park, Wyoming, 1999–2000, USGS Open File Rep., OF 02–382, 103
  10. Bargar, 1978, Geology and thermal history of Mammoth Hot Springs, Yellowstone National Park, Wyoming, US Geol. Soc. Bull., 1444, 55 p
  11. Bargar, 1981, Hydrothermal alteration in research drill hole Y-2, Lower Geyser Basin, Yellowstone National Park, Wyoming, Am. Mineral., 66, 473
  12. Bargar, 1984, Hydrothermal alteration in research drill hole Y-6, Upper Firehole River, Yellowstone National Park, Wyoming, USGS Prof. Pap.
  13. Bargar, 1984, Hydrothermal mineralogy of research drill hole Y-3, Yellowstone National Park, Wyoming, Geother. Resour. Counc., 8, 111
  14. Bargar, 1985, Hydrothermal alteration in research drill hole Y-3, Lower Geyser Basin, Yellowstone National Park, Wyoming, USGS Prof. Pap.
  15. Bargar, 1973, Present-day deposition of lepidolite from thermal waters in Yellowstone National Park, Am. Mineral., 58, 901
  16. Barns, 1996, Perspectives on archaeal diversity, thermophily and monophyly from environmental rRNA sequences, Proc. Natl. Acad. Sci. USA, 93, 9188, 10.1073/pnas.93.17.9188 · DOI
  17. Barns, 1994, Remarkable archaeal diversity detected in a Yellowstone National Park hot spring environment, Proc. Natl. Acad. Sci. USA, 91, 1609, 10.1073/pnas.91.5.1609 · DOI
  18. Beeson, 1984, Major and trace element analyses of drill cores from thermal areas in Yellowstone National Park, Wyoming, USGS Open File Rep., 84–373, 40
  19. Ben-Bassat, 1981, Thermobacteroides acetoethylicus gen. nov. and spec. nov., a new chemoorganotrophic, anaerobic, thermophilic bacterium, Arch. Microbiol., 128, 365, 10.1007/BF00405914 · DOI
  20. Bhaya, 2007, Population level functional diversity in a microbial community revealed by comparative genomic and metagenomic analyses, Int. Soc. Microb. Ecol. J., 1, 703
  21. Bischoff, 1996, The alteration of rhyolite in CO2 charged water at 200 and 350°C: the unreactivity of CO2 at higher temperature, Geochim. Cosmochim. Acta, 60, 3859, 10.1016/0016-7037(96)00208-6 · DOI
  22. Blank, 2002, Microbial composition of near-boiling silica-depositing thermal springs throughout Yellowstone National Park, Appl. Environ. Microbiol., 68, 5123, 10.1128/AEM.68.10.5123-5135.2002 · DOI
  23. Boomer, 2002, Molecular characterization of novel red green nonsulfur bacteria from five distinct hot spring communities in Yellowstone National Park, Appl. Environ. Microbiol., 68, 346, 10.1128/AEM.68.1.346-355.2002 · DOI
  24. Boomer, 2009, Formation of multilayered photosynthetic biofilms in an alkaline thermal spring in Yellowstone National Park, Wyoming, Appl. Environ. Microbiol., 75, 2464, 10.1128/AEM.01802-08 · DOI
  25. Botero, 2004, Thermobaculum terrenum gen. nov., sp., nov.: a non-phototrophic gram-positive thermophile representing an environmental clone group related to the Chloroflexi (green non-sulfur bacteria) and Thermomicrobia, Arch. Microbiol., 181, 269, 10.1007/s00203-004-0647-7 · DOI
  26. Botero, 2005, Poly(A) polymerase modification and reverse transcriptase PCR amplification of environmental RNA, Appl. Environ. Microbiol., 71, 1267, 10.1128/AEM.71.3.1267-1275.2005 · DOI
  27. Boyd, 2007, Isolation, characterization, and ecology of sulfur-respiring Crenarchaea inhabiting acid–sulfate–chloride-containing geothermal springs in Yellowstone National Park, Appl. Environ. Microbiol., 73, 6669, 10.1128/AEM.01321-07 · DOI
  28. Boyd, 2009, Methylmercury enters an aquatic food web though acidophilic microbial mats in Yellowstone National Park, Wyoming, Environ. Microbiol., 11, 950, 10.1111/j.1462-2920.2008.01820.x · DOI
  29. Bryant, 2007, Candidatus Chloracidobacterium thermophilum: an aerobic phototrophic acidobacterium, Science, 317, 523, 10.1126/science.1143236 · DOI
  30. Clark, 1990, Time scale of hydrothermal water–rock reactions in Yellowstone National Park based on radium isotopes and radon, J. Volcanol. Geoth. Res., 40, 169, 10.1016/0377-0273(90)90119-Z · DOI
  31. Costa, 2009, Microbiology and geochemistry of great boiling and mud hot springs in the United States Great Basin, Extremophiles, 13, 447, 10.1007/s00792-009-0230-x · DOI
  32. Cox, 1969, Results of water-resources investigations through 1968 in Yellowstone National Park Wyoming, USGS Open File Rep., OF 69–60, 87
  33. Cox, 1973, Water resources of Yellowstone National Park, Wyoming, Montana and Idaho, USGS Open File Rep., OF 73–53, 161
  34. Cox, 1978, Preliminary study of wastewater movement in Yellowstone National Park, Wyoming July 1975 through September 1976, USGS Open File Rep., OF 78–227, 54
  35. Cox, 1979, Preliminary study of wastewater movement in Yellowstone National Park, Wyoming October 1976 through September 1977, USGS Open File Rep., OF 79–684, 59
  36. Davis, 1897, The vegetation of the hot springs of Yellowstone park, Science, 6, 145, 10.1126/science.6.135.145 · DOI
  37. Davis, 2009, Assessment of the diversity, abundance, and ecological distribution of members of candidate division SR1 reveals a high level of phylogenetic diversity but limited morphotypic diversity, Appl. Environ. Microbiol., 75, 4139, 10.1128/AEM.00137-09 · DOI
  38. Davis, 2005, Effects of growth medium, inoculation size, and incubation time on culturability and isolation of soil Bacteria, Appl. Environ. Microbiol., 71, 823, 10.1128/AEM.71.2.826-834.2005 · DOI
  39. de la Torre, 2008, Cultivation of a thermophilic ammonia oxidizing archaeon synthesizing crenarchaeol, Environ. Microbiol., 10, 810, 10.1111/j.1462-2920.2007.01506.x · DOI
  40. DeLong, 2006, Community genomics among stratified microbial assemblages in the ocean’s interior, Science, 311, 496, 10.1126/science.1120250 · DOI
  41. Desbues, 2008, Biodiversity and biogeography of phages in modern stromatolites and thrombolites, Nature, 452, 340, 10.1038/nature06735 · DOI
  42. D’Imperio, 2008, Relative importance of H2 and H2S as energy sources for primary production in geothermal springs, Appl. Environ. Microbiol., 74, 5802, 10.1128/AEM.00852-08 · DOI
  43. Donahoe-Christiansen, 2004, Arsenite-oxidizing Hydrogenobaculum strain isolated from an acid–sulfate–chloride geothermal spring in Yellowstone National Park, Appl. Environ. Microbiol., 70, 1865, 10.1128/AEM.70.3.1865-1868.2004 · DOI
  44. Eder, 2002, New isolates and physiological properties of the Aquificales and description of Thermocrinis albus sp. nov, Extremophiles, 6, 309, 10.1007/s00792-001-0259-y · DOI
  45. Engle, 1995, Isolation and characterization of a novel alkalitolerant thermophile, Anaerobranca horikoshii gen. nov., sp. nov, Int. J. Syst. Bacteriol., 45, 454, 10.1099/00207713-45-3-454 · DOI
  46. Fenner, 1936, Bore-hole investigations in Yellowstone Park, J. Geol., 44, 225, 10.1086/624425 · DOI
  47. Ferris, 1997, Seasonal distributions of dominant 16S rRNA-defined populations in a hot spring microbial mat examined by denaturing gradient gel electrophoresis, Appl. Environ. Microbiol., 63, 1375, 10.1128/AEM.63.4.1375-1381.1997 · DOI
  48. Ferris, 1996, Denaturing gradient gel electrophoresis profiles of 16S rRNA-defined populations inhabiting a hot spring microbial mat community, Appl. Environ. Microbiol., 62, 340, 10.1128/AEM.62.2.340-346.1996 · DOI
  49. Ferris, 1996, Enrichment culture and microscopy conceal diverse thermophilic Synechococcus populations in a single hot spring microbial mat habitat, Appl. Environ. Microbiol., 62, 1045, 10.1128/AEM.62.3.1045-1050.1996 · DOI
  50. Ferris, 1997, Population structure and physiological changes within a hot spring microbial mat community following disturbance, Appl. Environ. Microbiol., 63, 1367, 10.1128/AEM.63.4.1367-1374.1997 · DOI
  51. Ferris, 2003, Cyanobacterial ecotypes in different optical microenvironments of a 68°C hot spring mat community revealed by 16S–23S rRNA internal transcribed spacer region variation, Appl. Environ. Microbiol., 69, 2893, 10.1128/AEM.69.5.2893-2898.2003 · DOI
  52. Ferris, 2003, Microbially mediated sulphide production in a thermal, acidic algal met community in Yellowstone National Park, Environ. Microbiol., 5, 954, 10.1046/j.1462-2920.2003.00494.x · DOI
  53. Fishbain, 2003, Linkage of high rates of sulfate reduction in Yellowstone hot springs to unique sequence types in the dissimilatory sulfate respiration pathway, Appl. Environ. Microbiol., 69, 3663, 10.1128/AEM.69.6.3663-3667.2003 · DOI
  54. Fouke, 2000, Depositional facies and aqueous-solid geochemistry of travertine-depositing springs (Angel Terrace, Mammoth Hot Springs, Yellowstone National Park, USA), J. Sed. Res., 70, 565, 10.1306/2DC40929-0E47-11D7-8643000102C1865D · DOI
  55. Fouke, 2003, Partitioning of bacterial communities between travertine depositional facies at Mammoth Hot Springs, Yellowstone National Park, USA, Can. J. Earth Sci., 40, 1531, 10.1139/e03-067 · DOI
  56. Fournier, 1989, Geochemistry and dynamics of the Yellowstone National Park hydrothermal system, Annu. Rev. Earth Planet. Sci., 17, 13, 10.1146/annurev.ea.17.050189.000305 · DOI
  57. Fournier, 1994, A field-trip guide to Yellowstone National Park, Wyoming, Montana and Idaho – Volcanic, hydrothermal, and glacial activity in the region, USGS Bull., 2099, 46 p
  58. Fournier, 2002, Results of weekly chemical, isotopic monitoring of selected springs in Norris Geyser Basin, Yellowstone National Park during June–September, 1995, USGS Open File Rep., OF 02–344, 50
  59. Friedman, 1990, Anomalous chloride flux discharges form Yellowstone National Park, J. Volcanol. Geoth. Res., 42, 225, 10.1016/0377-0273(90)90001-V · DOI
  60. Friedman, 2000, Data used for calculating chloride flux out of Yellowstone National Park for the water years 1983–1999, USGS Open File Rep., OF 00–194, 48
  61. Friedman I. and Norton D. R. (2007) Is Yellowstone losing its steam? – Chloride flux out of Yellowstone National Park. In Integrated geoscience studies in the greater Yellowstone area – Volcanic, tectonic and hydrothermal processes in the Yellowstone geoecosystem (ed. L. A. Morgan), US Geological Survey Paper, 1717, pp. 275–297.
  62. Friedman, 1988, Monitoring of thermal activity in southwestern Yellowstone National Park, USGS Open File Rep., OF 88–532, 23
  63. Friedman, 1993, Monitoring of thermal activity in southwestern Yellowstone National Park and vicinity, 1980–1993, USGS Bull., 2067, 19
  64. Gemery-Hill P. A., Shanks III W. C., Balistrieri L. S. and Lee G. K. (2007) Geochemical data doe selected rivers, lake waters, hydrothermal vents, and subaerial geysers in Yellowstone National Par, Wyoming and vicinity, 1996–2004. In Integrated geoscience studies in the greater Yellowstone area – Volcanic, tectonic and hydrothermal processes in the Yellowstone geoecosystem (ed. L. A. Morgan), US Geological Survey Paper, vol. 1717, pp. 367–426.
  65. Giggenbach, 1975, A simple method for the collection and analysis of volcanic gas samples, Bull. Volcanol., 39, 132, 10.1007/BF02596953 · DOI
  66. Giggenbach, 2001, Evaluation of results from the fourth and fifth IAVCEI field workshop on volcanic gases, Volcano island, Italy and Java, Indonesia, J. Volcanol. Geoth. Res., 108, 157, 10.1016/S0377-0273(00)00283-3 · DOI
  67. Gihring, 2001, Rapid arsenite oxidation by Thermus aquaticus and Thermus thermophilus: field and laboratory investigations, Environ. Sci. Technol., 35, 3857, 10.1021/es010816f · DOI
  68. Gooch, 1888, Analyses of waters of the Yellowstone National Park with an account of the methods of analysis employed, USGS Bull., 47, 82p
  69. Hague, 1911, Origin of the thermal waters of the Yellowstone National Park, Bull. Geol. Soc. Am., 22, 103, 10.1130/GSAB-22-103 · DOI
  70. Hall, 2008, Molecular characterization of the diversity and distribution of a thermal spring microbial community by using rRNA and metabolic genes, Appl. Environ. Microbiol., 74, 4910, 10.1128/AEM.00233-08 · DOI
  71. Hamamura, 2005, Diversity and functional analysis of bacterial communities associated with natural hydrocarbon seeps in acidic soils at Rainbow Springs, Yellowstone National Park, Appl. Environ. Microbiol., 71, 5943, 10.1128/AEM.71.10.5943-5950.2005 · DOI
  72. Havig J. R. (2009) Geochemistry of Hydrothermal Biofilms: Compositions of Biofilms in Siliceous-Sinter Depositing Hot Springs. Ph.D. Thesis, Arizona State University, 272 p.
  73. Heidelberg, 2009, Germ warfare in a microbial mat community: CRISPRs provide insights into the co-evolution of host and viral genomes, PLoS ONE, 4, e4169, 10.1371/journal.pone.0004169 · DOI
  74. Helgeson, 1969, Thermodynamics of hydrothermal systems at elevated temperatures and pressures, Am. J. Sci., 267, 729, 10.2475/ajs.267.7.729 · DOI
  75. Helgeson, 1978, Summary and critique of the thermodynamic properties of rock-forming minerals, Am. J. Sci., 278A, 1
  76. Henry, 1994, Characterization of a new thermophilic sulfate-reducing bacterium. Thermodesulfovibrio yellowstonii, gen. nov. and sp. nov.: its phylogenetic relationship to Thermodesulfobacterium commune and their origins deep within the bacterial domain, Arch. Microbiol., 161, 62, 10.1007/BF00248894 · DOI
  77. Hinman, 1996, Seasonal changes in silica deposition in hot spring systems, Chem. Geol., 132, 237, 10.1016/S0009-2541(96)00060-5 · DOI
  78. Hoehler, 2004, Biological energy requirements as quantitative boundary conditions for life in the subsurface, Geobiology, 2, 205, 10.1111/j.1472-4677.2004.00033.x · DOI · Paper page
  79. Honda, 1970, Hydrothermal alteration in core from research drill hole Y-1, Upper Geyser Basin, Yellowstone National Park, Wyoming, Am. Mineral., 55, 1714
  80. Huber, 1998, Thermocrinis ruber gen. nov., sp. nov., a pink-filament-forming hyperthermophilic bacterium isolated from Yellowstone National Park, Appl. Environ. Microbiol., 64, 3576, 10.1128/AEM.64.10.3576-3583.1998 · DOI
  81. Huber, 1998, Sulfur-inhibited Thermosphaera aggregans sp. nov., a new genus of hyperthermophilic archaea isolated after its prediction form environmentally derived 16s rRNA sequences, Int. J. Syst. Bacteriol., 48, 31, 10.1099/00207713-48-1-31 · DOI
  82. Hugenholtz, 1998, Novel division level bacterial diversity in a Yellowstone hot spring, J. Bacteriol., 180, 366, 10.1128/JB.180.2.366-376.1998 · DOI
  83. Hurwitz, 2007, Spatial and temporal geochemical trends in the hydrothermal system of Yellowstone National Park: inferences from river solute fluxes, J. Volcanol. Geoth. Res., 162, 149, 10.1016/j.jvolgeores.2007.01.003 · DOI
  84. Inskeep, 2004, Biomineralization of As(V)-hydrous ferric oxyhydroxide in microbial mats on as acid–sulfate–chloride geothermal spring, Yellowstone National Park, Geochim. Cosmochim. Acta, 68, 3141, 10.1016/j.gca.2003.09.020 · DOI
  85. Inskeep, 2005, On the energetics of chemolithotrophy in nonequilibrium systems: case studies of geothermal springs in Yellowstone National Park, Geobiology, 3, 297, 10.1111/j.1472-4669.2006.00059.x · DOI
  86. Jackson, 2001, Molecular analysis of microbial community structure in an arsenite-oxidizing acidic thermal spring, Environ. Microbiol., 3, 532, 10.1046/j.1462-2920.2001.00221.x · DOI
  87. Jahnke, 2001, Signature lipids and stable carbon isotope analyses of Octopus Spring hyperthermophilic communities compared with those of Aquificales representatives, Appl. Environ. Microbiol., 67, 5179, 10.1128/AEM.67.11.5179-5189.2001 · DOI
  88. Johnson, 2003, Novel thermo-acidophilic bacteria isolated from geothermal sites in Yellowstone National Park: physiological and phylogenetic characteristics, Arch. Microbiol., 180, 60, 10.1007/s00203-003-0562-3 · DOI
  89. Johnson, 1992, SUPCRT92: a software package for calculating the standard molal thermodynamic properties of minerals, gases, aqueous species, and reactions from 1 to 5000 bar and 0 to 1000°C, Comput. Geosci., 18, 899, 10.1016/0098-3004(92)90029-Q · DOI
  90. Kaeberlein, 2002, Isolating “uncultivable” microorganisms in pure culture in a simulated natural environment, Science, 296, 1127, 10.1126/science.1070633 · DOI
  91. Kashefi, 2002, Use of Fe(III) as an electron acceptor to recover previously uncultured hyperthermophiles: isolation and characterization of Geothermobacterium ferrireducens gen. nov., sp. nov., Appl. Environ. Microbiol., 68, 1735, 10.1128/AEM.68.4.1735-1742.2002 · DOI
  92. Keith, 1978, Minerals produced during cooling and hydrothermal alteration of ash flow tuff from Yellowstone drill hole Y-5, J.Volcanol. Geother. Resour., 3, 373, 10.1016/0377-0273(78)90044-6 · DOI
  93. Keith T. E. C., White D. E. and Beeson M. H. (1978) Hydrothermal alteration and self-sealing in Y-7 and Y-8 drill holes in northern part of Upper Geyser Basin, Yellowstone National Park, Wyoming. USGS Prof. Pap. 1054-A. · DOI
  94. Kempner, 1963, Upper temperature limit of life, Science, 142, 1318, 10.1126/science.142.3597.1318 · DOI
  95. Kharaka, 2002, Isotope and chemical compositions of meteoric and thermal waters and snow from the greater Yellowstone National Park region, USGS Open File Rep., OF 02–194, 75
  96. Kilian, 2007, Responses of a thermophilic Synechococcus isolate from the microbial mat of Octopus Spring to light, Appl. Environ. Microbiol., 73, 4268, 10.1128/AEM.00201-07 · DOI
  97. Kimble, 1995, Heliobacterium modesticaldum, sp. nov., a thermophilic heliobacterium of hot springs and volcanic soils, Arch. Microbiol., 163, 259, 10.1007/BF00393378 · DOI
  98. King, 2006, Mercury in water and biomass of microbial communities in hot springs of Yellowstone National Park, USA, Appl. Geochem., 21, 1868, 10.1016/j.apgeochem.2006.08.004 · DOI
  99. Klatt, 2007, Comparative genomics provides evidence for the 3-hydroxypropionate autotrophic pathway in filamentous anoxygenic phototrophic bacteria and in hot spring microbial mats, Environ. Microbiol., 9, 2067, 10.1111/j.1462-2920.2007.01323.x · DOI
  100. Kozubal, 2008, Isolation and distribution of a novel iron-oxidizing crenarchaeon from acidic geothermal springs in Yellowstone National Park, Appl. Environ. Microbiol., 74, 942, 10.1128/AEM.01200-07 · DOI
  101. Langer, 2001, Rapid oxidation of arsenite in a hot spring ecosystem, Yellowstone National Park, Environ. Sci. Technol., 35, 3302, 10.1021/es0105562 · DOI
  102. Lau, 2005, Molecular diversity of cyanobacteria inhabiting coniform structures and surrounding mat in a Yellowstone hot spring, Astrobiology, 5, 83, 10.1089/ast.2005.5.83 · DOI
  103. Lewis, 1997, The rare earth element geochemistry of acid–sulphate and acid–sulphate–chloride geothermal systems from Yellowstone National Park, Wyoming, USA, Geochim. Cosmochim. Acta, 61, 695, 10.1016/S0016-7037(96)00384-5 · DOI
  104. Lewis, 1998, Rare earth element speciation in geothermal fluids from Yellowstone National Park, Wyoming, USA, Geochim. Cosmochim. Acta, 62, 657, 10.1016/S0016-7037(97)00367-0 · DOI
  105. Lowry, 1964, Ground-water investigations in Yellowstone National Park, October 1960 to October 1963, USGS Open File Rep., 39
  106. Macur, 2004, Linking geochemical processes with microbial community analysis: successional dynamics in an arsenic-rich, acid–sulphate–chloride geothermal spring, Geobiology, 2, 163, 10.1111/j.1472-4677.2004.00032.x · DOI
  107. Martín-Cuadrado, 2007, Metagenomics of the deep Mediterranean, a warm bathypelagic habitat, PLoS ONE, 2, e914, 10.1371/journal.pone.0000914 · DOI
  108. Mazor, 1973, More on noble gases in Yellowstone National Park hot waters, Geochim. Cosmochim. Acta, 37, 515, 10.1016/0016-7037(73)90215-9 · DOI
  109. McCleskey, 2005, Water–chemistry data for selected hot springs, geysers, and streams in Yellowstone National Park, Wyoming, 2001–2002, USGS Open File Rep., OF 2004–1316, 94
  110. McCollom, 1997, Geochemical constraints on chemolithoautotrophic metabolism by microorganisms in seafloor hydrothermal systems, Geochim. Cosmochim. Acta, 61, 4375, 10.1016/S0016-7037(97)00241-X · DOI
  111. McCollom, 2000, Geochemical constraints on primary productivity in submarine hydrothermal vent plumes, Deep-Sea Res. I, 47, 85, 10.1016/S0967-0637(99)00048-5 · DOI
  112. McCollom, 2007, Geochemical constraints on sources of metabolic energy for chemolithoautotrophy in ultramafic-hosted deep-sea hydrothermal systems, Astrobiology, 7, 933, 10.1089/ast.2006.0119 · DOI
  113. McKenzie, 1977, Geothermal reservoir temperatures estimated from the oxygen isotope compositions of dissolved sulfate and water for hot springs and shallow drillholes, Geothermics, 5, 51, 10.1016/0375-6505(77)90008-6 · DOI
  114. Meyer-Dombard D. R. (2004) Geochemical Constraints on Microbial Diversity in Yellowstone National Park, Thesis, Doctor of Philosophy. Department of Earth and Planetary Sciences, Washington University in St. Louis, St. Louis, MO, p. 210.
  115. Meyer-Dombard, 2005, Archaeal and bacterial communities in geochemically diverse hot springs of Yellowstone National Park, USA, Geobiology, 3, 211, 10.1111/j.1472-4669.2005.00052.x · DOI
  116. Miller, 1998, Effects of visible light and UV radiation on photosynthesis in a population of a hot spring Cyanobacterium, a Synechococcus sp., subjected to high-temperature stress, Appl. Environ. Microbiol., 64, 3893, 10.1128/AEM.64.10.3893-3899.1998 · DOI
  117. Miller, 2006, Molecular population genetics and phenotypic diversification of two populations of the thermophilic cyanobacterium Mastigocladus laminosus, Appl. Environ. Microbiol., 72, 2793, 10.1128/AEM.72.4.2793-2800.2006 · DOI
  118. Miller, 2007, Phylogeography of the thermophilic cyanobacterium Mastigocladus laminosus, Appl. Environ. Microbiol., 73, 4751, 10.1128/AEM.02945-06 · DOI
  119. Miller, 2009, Bar-coded pyrosequencing reveals shared bacterial community properties along the temperature gradients of two alkaline hot springs in Yellowstone National Park, Appl. Environ. Microbiol., 75, 4565, 10.1128/AEM.02792-08 · DOI
  120. Miller, 1997, Geochemical processes and baselines for stream waters for Soda-Butte-Lamar Basin and Firehole-Gibbon Basin, Yellowstone National Park, USGS Open File Rep., OF 97–550, 28
  121. Mohagheghi, 1986, Isolation and characterization of Acidothermus cellulyticus gen. nov., sp. nov., a new genus of thermophilic, acidophilic cellulolytic bacteria, Int. J. Syst. Bacteriol., 36, 435, 10.1099/00207713-36-3-435 · DOI
  122. Mou, 2008, Bacterial carbon processing by generalist species in the coastal ocean, Nature, 451, 708, 10.1038/nature06513 · DOI
  123. Munster, 1986, Isolation and preliminary taxonomic studies of Thermus strains isolated from Yellowstone National Park, USA, J. Gen. Microbiol., 132, 1677
  124. Nakagawa, 2005, Int. J. Syst. Evol. Microbiol., 55, 2263, 10.1099/ijs.0.63708-0 · DOI
  125. Noguchi, 1963, Geochemical studies of some geysers in Yellowstone National Park, Proc. Jpn. Acad., 39, 370, 10.2183/pjab1945.39.370 · DOI
  126. Nold, 1995, Diverse Thermus species inhabit a single hot spring microbial mat, Syst. Appl. Microbiol., 18, 274, 10.1016/S0723-2020(11)80398-X · DOI
  127. Norris, 2002, The long-term effects of UV exclusion on the microbial composition and photosynthetic competence of bacteria in hot-spring microbial mats, FEMS Microbiol. Ecol., 39, 193, 10.1111/j.1574-6941.2002.tb00922.x · DOI
  128. Norton, 1985, Chloride flux out of Yellowstone National Park, J. Volcanol. Geoth. Res., 26, 231, 10.1016/0377-0273(85)90058-7 · DOI
  129. Norton, 1991, Chloride flux and surface water discharge out of Yellowstone national Park, 1982–1989, USGS Bull., 1959, 42
  130. Norton, 1988, Monitoring of thermal activity in the northern part of Yellowstone National Park, vicinity: Part 1-February 1985–June 1988, USGS Open File Rep., OF 9–211, 35
  131. Nübel, 2002, Microscopic examination of distribution and phenotypic properties of phylogenetically diverse Chloroflexaceae-related bacteria in hot spring microbial mats, Appl. Environ. Microbiol., 68, 4593, 10.1128/AEM.68.9.4593-4603.2002 · DOI
  132. Papke, 2003, Geographical isolation in hot spring cyanobacteria, Environ. Microbiol., 5, 650, 10.1046/j.1462-2920.2003.00460.x · DOI
  133. Park, 2005, New method to characterize microbial diversity using flow cytometry, J. Ind. Microbiol. Biotechnol., 32, 94, 10.1007/s10295-005-0208-3 · DOI
  134. Pierson, 1999, Phototrophs in high-iron-concentration microbial mats: physiological ecology of phototrophs in an iron-depositing hot spring, Appl. Environ. Microbiol., 65, 5474, 10.1128/AEM.65.12.5474-5483.1999 · DOI
  135. Planer-Friedrich, 2006, Volatile metals and metalloids in hydrothermal gases, Environ. Sci. Technol., 40, 3181, 10.1021/es051476r · DOI
  136. Planer-Friedrich, 2006, Speciation of volatile arsenic at geothermal features in Yellowstone National Park, Geochim. Cosmochim. Acta, 70, 2480, 10.1016/j.gca.2006.02.019 · DOI
  137. Planer-Friedrich, 2007, Thioarsenates in geothermal waters of Yellowstone National Park: determination, preservation and geochemical importance, Environ. Sci. Technol., 41, 5245, 10.1021/es070273v · DOI
  138. Pride, 2008, Genome signature analysis of thermal virus metagenomes reveals Archaea and thermophilic signatures, BMC Genomics, 9, 420, 10.1186/1471-2164-9-420 · DOI
  139. Ramsing, 2000, Highly ordered vertical structure of Synechococcus populations within the one-millimeter-thick photic zone of a hot spring cyanobacterial mat, Appl. Environ. Microbiol., 66, 1038, 10.1128/AEM.66.3.1038-1049.2000 · DOI
  140. Raymahashay, 1968, A geochemical study of rock alteration by hot springs in the Paint Pot Hill area, Yellowstone Park, Geochim. Cosmochim. Acta, 32, 499, 10.1016/0016-7037(68)90042-2 · DOI
  141. Raymond, 2008, Coloring in the tree of life, Trends Microbiol., 16, 41, 10.1016/j.tim.2007.11.003 · DOI
  142. Reysenbach, 2002, Merging genomes with geochemistry in hydrothermal ecosystems, Science, 296, 1077, 10.1126/science.1072483 · DOI
  143. Reysenbach, 1994, Phylogenetic analysis of the hyperthermophilic pink filament community in Octopus Spring, Yellowstone National Park, Appl. Environ. Microbiol., 60, 2113, 10.1128/AEM.60.6.2113-2119.1994 · DOI
  144. Reysenbach, 2000, Microbial diversity at 83 C in Calcite Springs, Yellowstone National Park: another environment where the Aquificales and “Korarchaeota” coexist, Extremophiles, 4, 61
  145. Reysenbach A. L., Banta A., Civello S., Daly J., Mitchel K., Lalonde S., Konhauser K., Rodman A., Rusterholtz K. and Takacs-Vesbach C. Aquificales in Yellowstone National Park. In: Geothermal Biology and Geochemistry in Yellowstone National Park (eds. Inskeep, W. P., McDermott, T. R.), Thermal Biology Institute, Montana State University, pp. 129–142.
  146. Rogers, 2006, Energetics of potential heterotrophic metabolisms in the marine hydrothermal system of Vulcano Island, Italy, Geochim. Cosmochim. Acta, 70, 6180, 10.1016/j.gca.2006.08.046 · DOI
  147. Rogers, 2005, Archaeal diversity and geochemical energy yields in a geothermal well on Vulcano Island, Italy, Geobiology, 3, 319, 10.1111/j.1472-4669.2006.00064.x · DOI
  148. Rogers, 2007, Temporal changes in fluid chemistry and energy profiles in the Vulcano island hydrothermal system, Astrobiology, 7, 905, 10.1089/ast.2007.0128 · DOI
  149. Rowe, 1973, Chemical analyses of thermal waters in Yellowstone National Park, Wyoming, 1960–65, USGS Bull., 1303, 31
  150. Roychoudhury, 2004, Sulfate respiration in extreme environments: a kinetic study, Geomicrobiol J., 21, 33, 10.1080/01490450490253446 · DOI
  151. Ruff-Roberts, 1994, Distribution of cultivated and uncultivated cyanobacteria and Chloroflexus-like bacteria in hot spring microbial mats, Appl. Environ. Microbiol., 60, 697, 10.1128/AEM.60.2.697-704.1994 · DOI
  152. Rusch, 2005, Microbial communities near the oxic/anoxic interface in the hydrothermal system of Vulcano Island, Italy, Chem. Geol., 224, 169, 10.1016/j.chemgeo.2005.07.026 · DOI
  153. Rusch, 2007, The Sorcerer II global ocean sampling expedition: northwest Atlantic through eastern tropical Pacific, PLoS Biol., 5, 398
  154. Rye, 1993, The question of recharge to the geysers and hot springs of Yellowstone National Park, USGS Open File Rep., OF 93–384, 40
  155. Rye, 2007, The question of recharge to the deep thermal reservoir underlying the geysers and hot springs of Yellowstone National Park, USGS Prof. Pap.
  156. Santegoeds, 1996, Denaturing gradient gel electrophoresis used to monitor the enrichment culture of aerobic chemoorganotrophic bacteria from a hot spring cyanobacterial mat, Appl. Environ. Microbiol., 62, 3922, 10.1128/AEM.62.11.3922-3928.1996 · DOI
  157. Schäffer, 2004, Int. J. Syst. Evol. Microbiol., 54, 2361, 10.1099/ijs.0.63227-0 · DOI
  158. Schlundt, 1909, Radioactivity of the thermal waters of Yellowstone National Park, USGS Bull., 395, 1
  159. Schoen, 1970, Sulfur isotope distributions in solfataras, Yellowstone National Park, Science, 170, 1082, 10.1126/science.170.3962.1082 · DOI
  160. Schoenfeld, 2008, Assembly of viral metagnomes from Yellowstone hot springs, Appl. Environ. Microbiol., 74, 4164, 10.1128/AEM.02598-07 · DOI
  161. Scott, 1964, Records of post earthquake chemical quality of ground water, USGS Prof. Pap., 435-P
  162. Setchell, 1903, The upper temperature limits of life, Science, 17, 934, 10.1126/science.17.441.934 · DOI
  163. Shanks, 2007, Geochemistry of sublacustrine hydrothermal deposits in Yellowstone Lake – Hydrothermal reactions, stable-isotope systematics, sinter deposition, and spire formation, USGS Prof. Pap., 1717-G
  164. Sheehan, 2005, Legionella species diversity in an acidic biofilm community in Yellowstone National Park, Appl. Environ. Microbiol., 71, 507, 10.1128/AEM.71.1.507-511.2005 · DOI
  165. Shock, 2009, Minerals as energy sources for microorganisms, Economic Geology, 104, 1235, 10.2113/gsecongeo.104.8.1235 · DOI
  166. Shock, 2004, Geochemical energy sources that support the subseafloor biosphere. The subseafloor biosphere at mid-ocean ridges, 153, 10.1029/144GM10 · DOI
  167. Shock, 1993, Hydrothermal processing of cometary volatiles – applications to triton, Icarus, 106, 464, 10.1006/icar.1993.1185 · DOI
  168. Shock, 1989, Calculation of the thermodynamic and transport properties of aqueous species at high pressures and temperatures: standard partial molal properties of inorganic neutral species, Geochim. Cosmochim. Acta, 53, 2157, 10.1016/0016-7037(89)90341-4 · DOI
  169. Shock, 1992, Calculation of the thermodynamic properties of aqueous species at high pressures and temperatures: effective electrostatic radii, dissociation constants, and standard partial molal properties to 1000°C and 5kb, J. Chem. Soc., Faraday Trans., 88, 803, 10.1039/FT9928800803 · DOI
  170. Shock, 1997, Inorganic species in geologic fluids: correlations among standard molal thermodynamic properties of aqueous ions and hydroxide complexes, Geochim. Cosmochim. Acta, 61, 907, 10.1016/S0016-7037(96)00339-0 · DOI
  171. Slobodkin, 1997, Thermoterrabacterium ferrireducens gen. nov., sp. nov., a thermophilic anaerobic dissimilatory Fe(III)-reducing bacterium from a continental hot spring, Int. J. Syst. Bacteriol., 47, 541, 10.1099/00207713-47-2-541 · DOI
  172. Slobodkin, 1997, Isolation and characterization of the homoacetogenic thermophilic bacterium Moorella glycerini sp. nov., Int. J. Syst. Bacteriol., 47, 969, 10.1099/00207713-47-4-969 · DOI
  173. Sokolova, 2004, Thermosinus carboxydivorans gen. nov., sp. nov., a new anaerobic, thermophilic, carbon-monoxide oxidizing, hydrogenogenic bacterium from a hot pool of Yellowstone National Park, Int. J. Syst. Evol. Microbiol., 54, 2353, 10.1099/ijs.0.63186-0 · DOI
  174. Spear, 2005, Hydrogen and bioenergetics in the Yellowstone geothermal ecosystem, Proceedings of the National Academy of Sciences, USA, 102, 2555, 10.1073/pnas.0409574102 · DOI
  175. Stauffer, 1984, As and Sb in geothermal waters of Yellowstone National Park, Geochim. Cosmochim. Acta, 48, 2547, 10.1016/0016-7037(84)90305-3 · DOI
  176. Stauffer, 1980, Chemical studies of selected trace elements in hot-spring drainages of Yellowstone National Park, USGS Prof. Paper, 1044-F, 20
  177. Streunou, 2006, In situ analysis of nitrogen fixation and metabolic switching in unicellular thermophilic cyanobacteria inhabiting hot spring microbial mats, Proc. Natl. Acad. Sci. USA, 103, 2398, 10.1073/pnas.0507513103 · DOI
  178. Streunou, 2008, Regulation of nif gene expression and the energetics of N2 fixation over the diel cycle in a hot spring microbial mat, The ISME Journal, 2, 364, 10.1038/ismej.2007.117 · DOI
  179. Stöhr, 2001, Hydrogenophilus hirschii sp. nov., a novel thermophilic hydrogen-oxidizing β-proteobacterium isolated from Yellowstone National Park, Int. J. Syst. Evol. Microbiol., 51, 481, 10.1099/00207713-51-2-481 · DOI
  180. Sverjensky, 1997, Prediction of the thermodynamic properties of aqueous metal complexes to 1000°C and 5kb, Geochim. Cosmochim. Acta, 61, 1359, 10.1016/S0016-7037(97)00009-4 · DOI
  181. Takacs-Vesbach, 2008, Volcanic calderas delineate biogeographic provinces among Yellowstone thermophiles, Environ. Microbiol., 10, 1681, 10.1111/j.1462-2920.2008.01584.x · DOI
  182. Thompson, 1996, Chemical analyses of hot springs, pools, and geysers from Yellowstone National Park, Wyoming, and vicinity, 1980–1993, USGS Open File Rep., OF 96–68, 66
  183. Thompson, 1981, Chemical analyses of waters from the Boundary Creek Thermal Area, Yellowstone National Park, Wyoming, USGS Open File Rep., OF 81–1310, 15
  184. Thompson, 1979, Chemical analyses of waters from geysers, hot springs, and pools in Yellowstone National Park, Wyoming, from 1974 to 1978, USGS Open File Rep., 79–704, 49
  185. Thompson, 1973, Chemical analysis of the waters of Yellowstone National Park, Wyoming from 1965 to 1973, USGS Open File Rep., OF 75–25, 58
  186. Toplin, 2008, Biogeographic and phylogenetic diversity of thermoacidophilic cyanidiales in Yellowstone National Park, Japan, and New Zealand, Appl. Environ. Microbiol., 74, 2822, 10.1128/AEM.02741-07 · DOI
  187. Tringe, 2005, Comparative metagenomics of microbial communities, Science, 308, 554, 10.1126/science.1107851 · DOI
  188. Truesdell, 1976, Conditions in the deeper parts of the hot spring systems on Yellowstone National Park, Wyoming, USGS Open File Rep., 76–428, 32
  189. Truesdell, 1977, The effects of subsurface boiling and dilution on the isotopic composition of Yellowstone thermal waters, J. Geophys. Res., 82, 3694, 10.1029/JB082i026p03694 · DOI
  190. van der Meer, 2000, Autotrophy of green non-sulphur bacteria in hot spring microbial mats: biological explanations for isotopically heavy organic carbon in the geologic record, Environ. Microbiol., 2, 428, 10.1046/j.1462-2920.2000.00124.x · DOI
  191. van der Meer, 2005, Diel variations in carbon metabolism by green nonsulfur-like bacteria in alkaline siliceous hot spring microbial mats from Yellowstone National Park, Appl. Environ. Microbiol., 71, 3978, 10.1128/AEM.71.7.3978-3986.2005 · DOI
  192. van der Meer, 2007, Impact of carbon metabolism on 13C signatures of cyanobacteria and green non-sulfur-like bacteria inhabiting a microbial mat from an alkaline siliceous hot spring in Yellowstone National Park (USA), Environ. Microbiol., 9, 482, 10.1111/j.1462-2920.2006.01165.x · DOI
  193. Venter, 2004, Environmental genome shotgun sequencing of the Sargasso Sea, Science, 304, 66, 10.1126/science.1093857 · DOI · Paper page
  194. Walker, 2005, Geobiology of a microbial endolithic community in the Yellowstone geothermal environment, Nature, 434, 1011, 10.1038/nature03447 · DOI
  195. Wang, 1995, Thermostable alkaline lipase from a newly isolated thermophilic Bacillus, strain A30–1 (ATCC 53841), J. Ferment. Bioeng., 79, 433, 10.1016/0922-338X(95)91257-6 · DOI
  196. Ward, 1990, 16S rRNA sequences reveal numerous uncultured microorganisms in a natural community, Nature, 345, 63, 10.1038/345063a0 · DOI
  197. Ward, 1992, Ribosomal analysis of microorganisms as they occur in nature, Adv. Microb. Ecol., 12, 219, 10.1007/978-1-4684-7609-5_5 · DOI
  198. Ward, 1997, Biodiversity within hot spring microbial mat communities: molecular monitoring of enrichment cultures, Antonie Van Leeuwenhoek, 71, 143, 10.1023/A:1000131426164 · DOI
  199. Ward, 1998, A natural view of microbial biodiversity within hot spring cyanobacterial mat communities, Microbiol. Mol. Biol. Rev., 62, 1353, 10.1128/MMBR.62.4.1353-1370.1998 · DOI
  200. Ward, 2006, Cyanobacterial ecotypes in the microbial mat community of Mushroom Spring (Yellowstone National Park, Wyoming) as species-like units linking microbial community composition, structure and function, Philos. Trans. R. Soc. B, 361, 1997, 10.1098/rstb.2006.1919 · DOI

200 of 215 shown

Cited by

Sorted by citations

  • The Astrobiology Primer v2.0

    Domagal-Goldman, S. D., Wright, K. E., Domagal-Goldman, S. D., Wright, K. E., Adamala, K., Arina de la Rubia, L., Bond, J., Dartnell, L. R., Goldman, A. D., Lynch, K., et al. (2016) · Astrobiology · doi:10.1089/ast.2015.1460 · Cited by 136

    “In this conceptual model, the generation of energy supply is mediated by the thermodynamics and kinetics of available redox reactions, and much work has been done to understand the impact of other environmental constraints (Amend et al., 2003; Shock et al., 2010).”
  • Radiolysis Generates a Complex Organosynthetic Chemical Network

    Adam, Z., Fahrenbach, A. C., Jacobson, S. M., Kacar, B., & Zubarev, D. Y. (2019) · doi:10.26434/chemrxiv.10148684 · Cited by 34

Metadata

Authors
Shock, E. L., Holland, M., Meyer-Dombard, D., Amend, J. P., Osburn, G. R., & Fischer, T. P.
Affiliations
  • Arizona State University (US)
  • Massachusetts Institute of Technology (US)
  • Washington University in St. Louis (US)
  • University of New Mexico (US)
Corresponding author
Shock, Everett L.
Venue
Geochimica et Cosmochimica Acta
Publisher
Elsevier BV
Published
2010-07
Volume
74
Issue
14
Pages
4005-4043
ISSN
0016-7037 (ISSN-L)
OpenAlex
W2065369668
Cited by
156
References
1
Citations by year
2026: 9 · 2025: 7 · 2024: 9 · 2023: 12 · 2022: 5 · 2021: 12 · 2020: 11 · 2019: 13 · 2018: 4 · 2017: 9 · 2016: 9 · 2015: 12 · 2014: 7 · 2013: 10 · 2012: 11
FWCI
10.15
Type
journal article
Language
en
Open access
closed
Locations
Geochimica et Cosmochimica Acta (publishedVersion)
Topics
  • Physical Sciences › Environmental Science › Ecology › Microbial Community Ecology and Physiology
  • Physical Sciences › Earth and Planetary Sciences › Geochemistry and Petrology › Geochemistry and Elemental Analysis
  • Physical Sciences › Materials Science › Metals and Alloys › Metal Extraction and Bioleaching
Keywords
hydrothermal ecosystems, hot springs, Yellowstone National Park, redox reactions, chemical affinity, electron acceptors, electron donors, dissolved oxygen, nitrate, sulfide, ferrous iron, magnetite, pyrite, hydrogen, carbon monoxide, pH dependence, energy yield

About these checks

Registry, retraction, Cites and statistics results are computed, not judged, with one exception: a printed reference that no index lists is read once by a model before it counts as a citation error. Claims are extracted by a model and kept only when their quote appears verbatim in the text; each cited source is then checked, with a model’s help, for whether it says what the claim relies on. Those verdicts can be wrong — read the claim’s quote and the cited source before relying on one.

Statistics and arithmetic are recomputed, not judged.

Confidence bands are shown only for fields calibrated on our annotated test set. None is calibrated yet, so no band is shown.

What counts as a claim ›How we measure confidence ›How we check this ›

Are you an author, or do you see a problem with this page? Request a review