Cited by 14Mitochondrial Function and PathologyAutophagy in Disease and TherapyATP Synthase and ATPases Research

The DOI matches its Crossref record; 1 of the 1 references it cites were found in a registry or an index.

Identification of SLC25A46 interaction interfaces with mitochondrial membrane fusogens Opa1 and Mfn2

Open access

Published version of a preprint

Abstract

Mitochondrial fusion requires the sequential merger of four bilayers to two. The outer-membrane solute carrier protein SLC25A46 interacts with both the outer and inner-membrane dynamin family GTPases Mfn1/2 and Opa1. While SLC25A46 levels are known to affect mitochondrial morphology, how SLC25A46 interacts with Mfn1/2 and Opa1 to regulate membrane fusion is not understood. In this study, we use crosslinking mass-spectrometry and AlphaFold 2 modeling to identify interfaces mediating a SLC25A46 interactions with Opa1 and Mfn2. We reveal that the bundle signaling element of Opa1 interacts with SLC25A46, and present evidence of a Mfn2 interaction involving the SLC25A46 cytosolic face. We validate these newly identified interaction interfaces and show that they play a role in mitochondrial network maintenance.

Overview

The claims and statistics of this paper haven’t been checked yet.

Run the check — free, no account needed. It reads the open-access text and checks the sources it cites.

A few free checks a day · papers already verified open instantly · results are public

Integrity signals

Registry

Crossref · 10.1016/j.jbc.2024.107740

Cites

1 of 1 references verified0 citation errors · 0 not checkable

Statistics

Verification

Claims the paper makes

The claims and statistics of this paper haven’t been checked yet.

Run the check — free, no account needed. It reads the open-access text and checks the sources it cites.

A few free checks a day · papers already verified open instantly · results are public

Self-check

Percentages, sums and reported differences re-computed from the paper’s own numbers.

The self-check needs the paper’s full text.

Citations

Cites

Flagged first, then by citations

Research works printed but not linked: 60

  1. Wai, 2016, Mitochondrial dynamics and metabolic regulation, Trends Endocrinol. Metab., 27, 105, 10.1016/j.tem.2015.12.001 · DOI
  2. Yapa, 2021, Mitochondrial dynamics in health and disease, FEBS Lett., 595, 1184, 10.1002/1873-3468.14077 · DOI
  3. Giacomello, 2020, The cell biology of mitochondrial membrane dynamics, Nat. Rev. Mol. Cell Biol., 21, 204, 10.1038/s41580-020-0210-7 · DOI · Paper page
  4. Chan, 2020, Mitochondrial dynamics and its involvement in disease, Annu. Rev. Pathol., 15, 235, 10.1146/annurev-pathmechdis-012419-032711 · DOI · Paper page
  5. Meyer, 2017, Mitochondrial fusion, fission, and mitochondrial toxicity, Toxicology, 391, 42, 10.1016/j.tox.2017.07.019 · DOI
  6. Janer, 2016, SLC25A46 is required for mitochondrial lipid homeostasis and cristae maintenance and is responsible for Leigh syndrome, EMBO Mol. Med., 8, 1019, 10.15252/emmm.201506159 · DOI
  7. Perivolidi, 2022, Proteomic identification of the SLC25A46 interactome in transgenic mice expressing slc25a46-FLAG, J. Proteome Res., 21, 375, 10.1021/acs.jproteome.1c00728 · DOI
  8. Schuettpelz, 2023, The role of the mitochondrial outer membrane protein SLC25A46 in mitochondrial fission and fusion, Life Sci. Alliance, 6, 10.26508/lsa.202301914 · DOI
  9. Steffen, 2017, Rapid degradation of mutant SLC25A46 by the ubiquitin-proteasome system results in MFN1/2-mediated hyperfusion of mitochondria, Mol. Biol. Cell, 28, 600, 10.1091/mbc.e16-07-0545 · DOI
  10. Kunji, 2020, The SLC25 carrier family: important transport proteins in mitochondrial physiology and pathology, Physiology (Bethesda), 35, 302
  11. Kodal, 2022, Case report: a novel variant in SLC25A46 causing sensorimotor polyneuropathy and optic atrophy, Front Neurol., 13, 10.3389/fneur.2022.1066040 · DOI
  12. Yamada, 2022, Diagnosis of SLC25A46-related pontocerebellar hypoplasia in two siblings with fulminant neonatal course: role of postmortem CT and whole genomic analysis: a case report, BMC Neurol., 22, 20, 10.1186/s12883-021-02540-x · DOI
  13. Li, 2021, Reanalysis of exome data identifies novel SLC25A46 variants associated with Leigh syndrome, J. Pers Med., 11
  14. Raju, 2021, Dystonia and hereditary motor sensory neuropathy 6B due to SLC25A46 gene mutations, Mov Disord. Clin. Pract., 8, 480, 10.1002/mdc3.13139 · DOI
  15. Bitetto, 2020, SLC25A46 mutations in patients with Parkinson's Disease and optic atrophy, Parkinsonism Relat. Disord., 74, 1, 10.1016/j.parkreldis.2020.03.018 · DOI
  16. Abrams, 2018, Insights into the genotype-phenotype correlation and molecular function of SLC25A46, Hum. Mutat., 39, 1995, 10.1002/humu.23639 · DOI
  17. Ivanov, 2018, Pontocerebellar hypoplasia type 1 for the neuropediatrician: genotype-phenotype correlations and diagnostic guidelines based on new cases and overview of the literature, Eur. J. Paediatr. Neurol., 22, 674, 10.1016/j.ejpn.2018.03.011 · DOI
  18. Braunisch, 2018, Extension of the phenotype of biallelic loss-of-function mutations in SLC25A46 to the severe form of pontocerebellar hypoplasia type I, Clin. Genet., 93, 255, 10.1111/cge.13084 · DOI
  19. van Dijk, 2017, Pontocerebellar hypoplasia with spinal muscular atrophy (PCH1): identification of SLC25A46 mutations in the original Dutch PCH1 family, Brain, 140, 10.1093/brain/awx147 · DOI
  20. Hammer, 2017, SLC25A46 mutations associated with autosomal recessive cerebellar ataxia in north african families, Neurodegener Dis., 17, 208, 10.1159/000464445 · DOI
  21. Sulaiman, 2017, A novel mutation in SLC25A46 causes optic atrophy and progressive limb spasticity, with no cerebellar atrophy or axonal neuropathy, Clin. Genet., 92, 230, 10.1111/cge.12963 · DOI
  22. Wan, 2016, Loss of function of SLC25A46 causes lethal congenital pontocerebellar hypoplasia, Brain, 139, 2877, 10.1093/brain/aww212 · DOI
  23. Charlesworth, 2016, SLC25A46 mutations underlie progressive myoclonic ataxia with optic atrophy and neuropathy, Mov Disord., 31, 1249, 10.1002/mds.26716 · DOI
  24. Nguyen, 2017, Novel pathogenic SLC25A46 splice-site mutation causes an optic atrophy spectrum disorder, Clin. Genet., 91, 121, 10.1111/cge.12774 · DOI
  25. Abrams, 2015, Mutations in SLC25A46, encoding a UGO1-like protein, cause an optic atrophy spectrum disorder, Nat. Genet., 47, 926, 10.1038/ng.3354 · DOI
  26. Duchesne, 2017, Bovine and murine models highlight novel roles for SLC25A46 in mitochondrial dynamics and metabolism, with implications for human and animal health, PLoS Genet., 13, 10.1371/journal.pgen.1006597 · DOI
  27. Li, 2017, Loss of SLC25A46 causes neurodegeneration by affecting mitochondrial dynamics and energy production in mice, Hum. Mol. Genet., 26, 3776, 10.1093/hmg/ddx262 · DOI
  28. Suda, 2018, Novel Drosophila model for mitochondrial diseases by targeting of a solute carrier protein SLC25A46, Brain Res., 1689, 30, 10.1016/j.brainres.2018.03.028 · DOI
  29. Terzenidou, 2017, Novel insights into SLC25A46-related pathologies in a genetic mouse model, PLoS Genet., 13, 10.1371/journal.pgen.1006656 · DOI
  30. Qiu, 2022, Light-activated mitochondrial fission through optogenetic control of mitochondria-lysosome contacts, Nat. Commun., 13, 4303, 10.1038/s41467-022-31970-5 · DOI
  31. Santo-Domingo, 2023, SLC25A46 promotes mitochondrial fission and mediates resistance to lipotoxic stress in INS-1E insulin-secreting cells, J. Cell Sci., 136, 10.1242/jcs.260049 · DOI
  32. Coonrod, 2007, Ugo1p is a multipass transmembrane protein with a single carrier domain required for mitochondrial fusion, Traffic, 8, 500, 10.1111/j.1600-0854.2007.00550.x · DOI
  33. Sesaki, 2001, UGO1 encodes an outer membrane protein required for mitochondrial fusion, J. Cell Biol., 152, 1123, 10.1083/jcb.152.6.1123 · DOI
  34. Sesaki, 2004, Ugo1p links the Fzo1p and Mgm1p GTPases for mitochondrial fusion, J. Biol. Chem., 279, 28298, 10.1074/jbc.M401363200 · DOI
  35. Hoppins, 2009, Mitochondrial outer and inner membrane fusion requires a modified carrier protein, J. Cell Biol., 184, 569, 10.1083/jcb.200809099 · DOI
  36. Sesaki, 2003, Mgm1p, a dynamin-related GTPase, is essential for fusion of the mitochondrial outer membrane, Mol. Biol. Cell, 14, 2342, 10.1091/mbc.e02-12-0788 · DOI
  37. Wong, 2003, The intramitochondrial dynamin-related GTPase, Mgm1p, is a component of a protein complex that mediates mitochondrial fusion, J. Cell Biol., 160, 303, 10.1083/jcb.200209015 · DOI
  38. Mirdita, 2022, ColabFold: making protein folding accessible to all, Nat. Methods, 19, 679, 10.1038/s41592-022-01488-1 · DOI · Paper page
  39. Ishihara, 2006, Regulation of mitochondrial morphology through proteolytic cleavage of OPA1, EMBO J., 25, 2966, 10.1038/sj.emboj.7601184 · DOI · Paper page
  40. Olichon, 2002, The human dynamin-related protein OPA1 is anchored to the mitochondrial inner membrane facing the inter-membrane space, FEBS Lett., 523, 171, 10.1016/S0014-5793(02)02985-X · DOI
  41. Chappie, 2009, An intramolecular signaling element that modulates dynamin function in vitro and in vivo, Mol. Biol. Cell, 20, 3561, 10.1091/mbc.e09-04-0318 · DOI
  42. Sever, 1999, Impairment of dynamin's GAP domain stimulates receptor-mediated endocytosis, Nature, 398, 481, 10.1038/19024 · DOI
  43. Anand, 2016, Crystal structure of the GTPase domain and the bundle signalling element of dynamin in the GDP state, Biochem. Biophys. Res. Commun., 469, 76, 10.1016/j.bbrc.2015.11.074 · DOI
  44. Chappie, 2010, G domain dimerization controls dynamin's assembly-stimulated GTPase activity, Nature, 465, 435, 10.1038/nature09032 · DOI
  45. Kong, 2018, Cryo-EM of the dynamin polymer assembled on lipid membrane, Nature, 560, 258, 10.1038/s41586-018-0378-6 · DOI
  46. Li, 2019, Structural insights of human mitofusin-2 into mitochondrial fusion and CMT2A onset, Nat. Commun., 10, 4914, 10.1038/s41467-019-12912-0 · DOI
  47. Labbe, 2021, The modified mitochondrial outer membrane carrier MTCH2 links mitochondrial fusion to lipogenesis, J. Cell Biol, 220, 10.1083/jcb.202103122 · DOI
  48. Tondera, 2009, SLP-2 is required for stress-induced mitochondrial hyperfusion, EMBO J., 28, 1589, 10.1038/emboj.2009.89 · DOI
  49. Gao, 2021, Mitochondrial fusion: the machineries in and out, Trends Cell Biol., 31, 62, 10.1016/j.tcb.2020.09.008 · DOI
  50. Anand, 2014, The i-AAA protease YME1L and OMA1 cleave OPA1 to balance mitochondrial fusion and fission, J. Cell Biol., 204, 919, 10.1083/jcb.201308006 · DOI · Paper page
  51. Ban, 2017, Molecular basis of selective mitochondrial fusion by heterotypic action between OPA1 and cardiolipin, Nat. Cell Biol., 19, 856, 10.1038/ncb3560 · DOI · Paper page
  52. Ge, 2020, Two forms of Opa1 cooperate to complete fusion of the mitochondrial inner-membrane, Elife, 9, 10.7554/eLife.50973 · DOI · Paper page
  53. Mishra, 2014, Proteolytic cleavage of Opa1 stimulates mitochondrial inner membrane fusion and couples fusion to oxidative phosphorylation, Cell Metab., 19, 630, 10.1016/j.cmet.2014.03.011 · DOI · Paper page
  54. Schuettpelz, 2024, SLC25A46 Is in Contact with Lysosomes and Plays a Role in Mitochondrial Cholesterol Homeostasis, bioRxiv
  55. Faelber, 2019, Structure and assembly of the mitochondrial membrane remodelling GTPase Mgm1, Nature, 571, 429, 10.1038/s41586-019-1372-3 · DOI
  56. Nyenhuis, 2023, OPA1 helical structures give perspective to mitochondrial dysfunction, Nature, 620, 1109, 10.1038/s41586-023-06462-1 · DOI
  57. von der Malsburg, 2023, Structural mechanism of mitochondrial membrane remodelling by human OPA1, Nature, 620, 1101, 10.1038/s41586-023-06441-6 · DOI
  58. Hartmann, 2016, Expression of eukaryotic membrane proteins in Pichia pastoris, Methods Mol. Biol., 1432, 143, 10.1007/978-1-4939-3637-3_10 · DOI
  59. Wang, 2021, Identification of new OPA1 cleavage site reveals that short isoforms regulate mitochondrial fusion, Mol. Biol. Cell, 32, 157, 10.1091/mbc.E20-09-0605 · DOI
  60. Schindelin, 2012, Fiji: an open-source platform for biological-image analysis, Nat. Methods, 9, 676, 10.1038/nmeth.2019 · DOI · Paper page

Metadata

Authors
Boopathy, S., Luce, B. E., Lugo, C. M., Hakim, P., McDonald, J., Kim, H. L., Ponce, J., Ueberheide, B. M., & Chao, L. H.
Affiliations
  • Harvard University (US)
  • Massachusetts General Hospital (US)
  • NYU Langone Health (US)
Corresponding author
Chao, Luke H.
Venue
Journal of Biological Chemistry
Publisher
Elsevier BV
Published
2024-10
Volume
300
Issue
10
Pages
107740
ISSN
0021-9258 (ISSN-L)
OpenAlex
W4402083452
Cited by
14
References
1
Citations by year
2026: 5 · 2025: 9
FWCI
1.91
Type
journal article
Language
en
Open access
Locations
  • Journal of Biological Chemistry (publishedVersion, cc-by)
  • bioRxiv (Cold Spring Harbor Laboratory) (acceptedVersion, cc-by-nc-nd)
  • PubMed Central (publishedVersion, cc-by)
  • PubMed (publishedVersion)
  • PubMed Central (submittedVersion, cc-by-nc-nd)
Funders
  • National Institutes of Health (1S10OD010582-01A1)
  • NIGMS (R35GM142553)
Topics
  • Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › Mitochondrial Function and Pathology
  • Life Sciences › Biochemistry, Genetics and Molecular Biology › Cell Biology › Autophagy in Disease and Therapy
  • Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › ATP Synthase and ATPases Research
Keywords
SLC25A46, OPA1, mitofusin 2, mitochondrial fusion, protein-protein interfaces, mitochondrial membrane, mitochondrial morphology, cross-linking mass spectrometry

About these checks

Registry, retraction, Cites and statistics results are computed, not judged, with one exception: a printed reference that no index lists is read once by a model before it counts as a citation error. Claims are extracted by a model and kept only when their quote appears verbatim in the text; each cited source is then checked, with a model’s help, for whether it says what the claim relies on. Those verdicts can be wrong — read the claim’s quote and the cited source before relying on one.

Statistics and arithmetic are recomputed, not judged.

Confidence bands are shown only for fields calibrated on our annotated test set. None is calibrated yet, so no band is shown.

What counts as a claim ›How we measure confidence ›How we check this ›

Are you an author, or do you see a problem with this page? Request a review