The DOI matches its Crossref record; 2 of the 2 references it cites were found in a registry or an index.
“Molecular insights into the bactericidal toxin Tle1 of Pseudomonas aeruginosa: Interaction with VgrG, its adaptor, and its immunity protein”
Open accessPublished version of a preprint
Abstract
The Type VI secretion system delivers a wide range of antibacterial effectors, including phospholipases of the Tle family. Here, we characterize Tle1 from Pseudomonas aeruginosa and demonstrate that it functions as a bactericidal toxin when associated to the membranes in the periplasm. Bacterial two-hybrid assays revealed specific protein-protein interactions within the tle1 locus, involving the immunity protein Tli1a, the chaperone/adapter Tla1, and the spike protein VgrG4a. These interactions were independently validated by co-purification assays. Structural modeling with AlphaFold 3 produced a high-confidence ternary complex in which a VgrG4a trimer accommodates one Tle1 monomer and one Tla1 monomer. The three predicted interfaces (Tle1-Tla1, Tla1-VgrG4a, and Tle1-VgrG4a) were confirmed experimentally in vivo and important charged residues mediating these interfaces were identified. Furthermore, modeling of the Tle1-Tli1a complex suggests an inhibition mechanism that does not occlude the catalytic pocket. Consistently, Tli1a was localized to the outer membrane of P. aeruginosa, supporting in silico predictions of an outer membrane lipoprotein and positioning it ideally to neutralize periplasmic Tle1 activity. In contrast, we did not detect the second candidate immunity protein, Tli1b, either in P. aeruginosa or in Escherichia coli, and, following a bioinformatic analysis of the locus of the PAO1 strain, we propose that it is a pseudogene. Together, these findings elucidate the molecular interactions underlying Tle1 delivery and inhibition and highlight the role of Tli1a as a dedicated immunity protein that protects P. aeruginosa from self-intoxication.
Overview
The claims and statistics of this paper haven’t been checked yet.
Run the check — free, no account needed. It reads the open-access text and checks the sources it cites.
Integrity signals
Registry
Cites
Statistics
Verification
Claims the paper makes
The claims and statistics of this paper haven’t been checked yet.
Run the check — free, no account needed. It reads the open-access text and checks the sources it cites.
Self-check
Percentages, sums and reported differences re-computed from the paper’s own numbers.
The self-check needs the paper’s full text.
Citations
Cites
Highly accurate protein structure prediction with AlphaFold
Jumper, J., Evans, R., Pritzel, A., Green, T., Figurnov, M., Ronneberger, O., Tunyasuvunakool, K., Bates, R., Žídek, A., Potapenko, A., et al. (2021) · Nature · doi:10.1038/s41586-021-03819-2 · Cited by 43,764
Accurate structure prediction of biomolecular interactions with AlphaFold 3
Abramson, J., Adler, J., Dunger, J., Evans, R., Green, T., Pritzel, A., Ronneberger, O., Willmore, L., Ballard, A. J., Bambrick, J., et al. (2024) · Nature · doi:10.1038/s41586-024-07487-w · Cited by 15,861
Flagged first, then by citations
Research works printed but not linked: 56
- Jurado-Martín, 2021, Pseudomonas aeruginosa: an audacious pathogen with an adaptable arsenal of virulence factors, Int. J. Mol. Sci., 22, 3128, 10.3390/ijms22063128 · DOI
- Sati, 2025, The WHO bacterial priority pathogens list 2024: a prioritisation study to guide research, development, and public health strategies against antimicrobial resistance, Lancet Infect Dis., 25, 1033, 10.1016/S1473-3099(25)00118-5 · DOI
- Colautti, 2025, Specialized killing across the domains of life by the type VI secretion systems of Pseudomonas aeruginosa, Biochem. J., 482, 1, 10.1042/BCJ20230240 · DOI
- Mougous, 2006, A virulence locus of Pseudomonas aeruginosa encodes a protein secretion apparatus, Science, 312, 1526, 10.1126/science.1128393 · DOI
- Sana, 2016, The T6SSs of Pseudomonas aeruginosa strain PAO1 and their effectors: beyond bacterial-cell targeting, Front. Cell Infect. Microbiol., 6, 61, 10.3389/fcimb.2016.00061 · DOI
- Wohlfarth, 2025, The type VI secretion system and associated effector proteins, Nat. Rev. Microbiol., 24, 288, 10.1038/s41579-025-01256-w · DOI
- Habich, 2025, Distribution of the four type VI secretion systems in Pseudomonas aeruginosa and classification of their core and accessory effectors, Nat. Commun., 16, 888, 10.1038/s41467-024-54649-5 · DOI
- Russell, 2013, Diverse type VI secretion phospholipases are functionally plastic antibacterial effectors, Nature, 496, 508, 10.1038/nature12074 · DOI
- Jiang, 2016, The Pseudomonas aeruginosa type VI secretion PGAP1-like effector induces host autophagy by activating endoplasmic reticulum stress, Cell Rep., 16, 1502, 10.1016/j.celrep.2016.07.012 · DOI
- Berni, 2019, A type VI secretion system trans-kingdom effector is required for the delivery of a novel antibacterial toxin in Pseudomonas aeruginosa, Front. Microbiol., 10, 1218, 10.3389/fmicb.2019.01218 · DOI
- Jiang, 2014, A Pseudomonas aeruginosa type VI secretion phospholipase D effector targets both prokaryotic and eukaryotic cells, Cell Host & Microbe, 15, 600, 10.1016/j.chom.2014.04.010 · DOI
- Benz, 2014, Antibacterial effector/immunity systems: it’s just the tip of the iceberg, Curr. Opin. Microbiol., 17, 1, 10.1016/j.mib.2013.11.002 · DOI
- Hu, 2014, Structure of the type VI secretion phospholipase effector Tle1 provides insight into its hydrolysis and membrane targeting, Acta Crystallogr. D Biol. Crystallogr., 70, 2175, 10.1107/S1399004714012899 · DOI
- Bartoli, 2023, Characterization of a (p)ppApp synthetase belonging to a new family of polymorphic toxin associated with temperate phages, J. Mol. Biol., 435, 10.1016/j.jmb.2023.168282 · DOI
- Barret, 2011, Genomic analysis of the type VI secretion systems in Pseudomonas spp.: novel clusters and putative effectors uncovered, Microbiology, 157, 1726, 10.1099/mic.0.048645-0 · DOI
- Allsopp, 2023, Killing in the name of: T6SS structure and effector diversity, Microbiology, 169, 10.1099/mic.0.001367 · DOI
- Unterweger, 2015, Chimeric adaptor proteins translocate diverse type VI secretion system effectors in Vibrio cholerae, EMBO J., 34, 2198, 10.15252/embj.201591163 · DOI
- Zückert, 2014, Secretion of bacterial lipoproteins: through the cytoplasmic membrane, the periplasm and beyond, Biochim. Biophys. Acta, 1843, 1509, 10.1016/j.bbamcr.2014.04.022 · DOI
- Narita, 2007, Amino acids at positions 3 and 4 determine the membrane specificity of Pseudomonas aeruginosa lipoproteins, J. Biol. Chem., 282, 13372, 10.1074/jbc.M611839200 · DOI
- Crisan, 2019, Analysis of Vibrio cholerae genomes identifies new type VI secretion system gene clusters, Genome Biol., 20, 163, 10.1186/s13059-019-1765-5 · DOI
- Liu, 2017, Identification and characterization of an antibacterial type VI secretion system in the carbapenem-resistant strain Klebsiella pneumoniae HS11286, Front. Cell Infect. Microbiol., 7, 442, 10.3389/fcimb.2017.00442 · DOI
- Flaugnatti, 2016, A phospholipase A1 antibacterial type VI secretion effector interacts directly with the C-terminal domain of the VgrG spike protein for delivery, Mol. Microbiol., 99, 1099, 10.1111/mmi.13292 · DOI
- Bouveret, 1999, In vitro characterization of peptidoglycan-associated lipoprotein (PAL)-peptidoglycan and PAL-TolB interactions, J. Bacteriol., 181, 6306, 10.1128/JB.181.20.6306-6311.1999 · DOI
- Leiman, 2009, Type VI secretion apparatus and phage tail-associated protein complexes share a common evolutionary origin, Proc. Natl. Acad. Sci. U. S. A., 106, 4154, 10.1073/pnas.0813360106 · DOI
- Pukatzki, 2007, Type VI secretion system translocates a phage tail spike-like protein into target cells where it cross-links actin, Proc. Natl. Acad. Sci. U. S. A., 104, 15508, 10.1073/pnas.0706532104 · DOI
- van Kempen, 2024, Fast and accurate protein structure search with foldseek, Nat Biotechnol, 42, 243, 10.1038/s41587-023-01773-0 · DOI · Paper page
- Colautti, 2024, A widespread accessory protein family diversifies the effector repertoire of the type VI secretion system spike, Nat. Commun., 15, 10.1038/s41467-024-54509-2 · DOI
- Liu, 2023, The phospholipase effector Tle1Vc promotes Vibrio cholerae virulence by killing competitors and impacting gene expression, Gut Microbes, 15, 10.1080/19490976.2023.2241204 · DOI
- Ma, 2017, The Hcp proteins fused with diverse extended-toxin domains represent a novel pattern of antibacterial effectors in type VI secretion systems, Virulence, 8, 1189, 10.1080/21505594.2017.1279374 · DOI
- Ma, 2020, Identification of a new effector-immunity pair of Aeromonas hydrophila type VI secretion system, Vet Res., 51, 71, 10.1186/s13567-020-00794-w · DOI
- Perault, 2020, Host adaptation predisposes Pseudomonas aeruginosa to type VI secretion system-mediated predation by the Burkholderia cepacia complex, Cell Host Microbe, 28, 534, 10.1016/j.chom.2020.06.019 · DOI
- Ringel, 2017, The role of type VI secretion system effectors in target cell lysis and subsequent horizontal gene transfer, Cell Rep., 21, 3927, 10.1016/j.celrep.2017.12.020 · DOI
- Tan, 2025, A phospholipase effector of the type VI secretion system modulates plant reproduction, mBio, 10.1128/mbio.01546-25 · DOI
- Merciecca, 2022, Role of Klebsiella pneumoniae type VI secretion system (T6SS) in long-term gastrointestinal colonization, Sci Rep., 12, 10.1038/s41598-022-21396-w · DOI
- Rudzite, 2023, Effectiveness of Pseudomonas aeruginosa type VI secretion system relies on toxin potency and type IV pili-dependent interaction, PLoS Pathog., 19, 10.1371/journal.ppat.1011428 · DOI
- Le, 2023, Activity and crystal structure of the adherent-invasive Escherichia coli Tle3/Tli3 T6SS effector/immunity complex determined using an AlphaFold2 predicted model, Int J Mol Sci., 24, 1740, 10.3390/ijms24021740 · DOI
- Lu, 2014, The structural basis of the Tle4–Tli4 complex reveals the self-protection mechanism of H2-T6SS in Pseudomonas aeruginosa, Acta Cryst D, 70, 3233, 10.1107/S1399004714023967 · DOI
- Yang, 2016, Structural analysis of Pseudomonas aeruginosa H3-T6SS immunity proteins, FEBS Lett., 590, 2787, 10.1002/1873-3468.12291 · DOI
- Yang, 2017, Structural and SAXS analysis of Tle5–Tli5 complex reveals a novel inhibition mechanism of H2-T6SS in Pseudomonas aeruginosa, Protein Sci., 26, 2083, 10.1002/pro.3246 · DOI
- Wen, 2020, Characterization of the Pseudomonas aeruginosa T6SS PldB immunity proteins PA5086, PA5087 and PA5088 explains a novel stockpiling mechanism, Acta Crystallogr. Section F, 76, 222, 10.1107/S2053230X2000566X · DOI
- Yang, 2022, Structural insights into PA3488-mediated inactivation of Pseudomonas aeruginosa PldA, Nat. Commun., 13, 5979, 10.1038/s41467-022-33690-2 · DOI
- Bosch, 2023, Structural disruption of Ntox15 nuclease effector domains by immunity proteins protects against type VI secretion system intoxication in Bacteroidales, mBio, 14
- Bondage, 2016, VgrG C terminus confers the type VI effector transport specificity and is required for binding with PAAR and adaptor–effector complex, Proc. Natl. Acad. Sci. U. S. A., 113, E3931, 10.1073/pnas.1600428113 · DOI
- Quentin, 2018, Mechanism of loading and translocation of type VI secretion system effector Tse6, Nat Microbiol, 3, 1142, 10.1038/s41564-018-0238-z · DOI
- Burkinshaw, 2018, A type VI secretion system effector delivery mechanism dependent on PAAR and a chaperone–co-chaperone complex, Nat Microbiol, 3, 632, 10.1038/s41564-018-0144-4 · DOI
- Luo, 2025, Pseudomonas aeruginosa T6SS secretes an oxygen-binding hemerythrin to facilitate competitive growth under microaerobic conditions, Microbiol. Res., 293, 10.1016/j.micres.2025.128052 · DOI
- Hachani, 2011, Type VI secretion system in Pseudomonas aeruginosa: Secretion and multimerization of VgrG proteins, J. Biol. Chem., 286, 12317, 10.1074/jbc.M110.193045 · DOI
- Jeong, 2012, One-step Sequence- and ligation-independent cloning as a rapid and versatile cloning method for functional genomics studies, Appl. Environ. Microbiol., 78, 5440, 10.1128/AEM.00844-12 · DOI
- Battesti, 2012, The bacterial two-hybrid system based on adenylate cyclase reconstitution in Escherichia coli, Methods, 58, 325, 10.1016/j.ymeth.2012.07.018 · DOI
- Karimova, 1998, A bacterial two-hybrid system based on a reconstituted signal transduction pathway, PNAS, 95, 5752, 10.1073/pnas.95.10.5752 · DOI
- Sana, 2015, Internalization of Pseudomonas aeruginosa strain PAO1 into epithelial cells is promoted by interaction of a T6SS effector with the microtubule network, mBio, 10.1128/mBio.00712-15 · DOI
- Gimenez, 2018, Genome wide identification and experimental validation of Pseudomonas aeruginosa Tat substrates, Sci. Rep., 8, 10.1038/s41598-018-30393-x · DOI
- Ize, 2014, Cell fractionation, Methods Mol. Biol., 1149, 185, 10.1007/978-1-4939-0473-0_15 · DOI
- Krissinel, 2007, Inference of macromolecular assemblies from crystalline state, J. Mol. Biol., 372, 774, 10.1016/j.jmb.2007.05.022 · DOI
- Pettersen, 2004, UCSF Chimera--a visualization system for exploratory research and analysis, J. Comput. Chem., 25, 1605, 10.1002/jcc.20084 · DOI
- Kaniga, 1991, A wide-host-range suicide vector for improving reverse genetics in gram-negative bacteria: inactivation of the blaA gene of Yersinia enterocolitica, Gene, 109, 10.1016/0378-1119(91)90599-7 · DOI
Metadata
- Authors
- Lefebvre, D., Soscia, C., Schmitt, L., Goulet, A., Ize, B., & Bleves, S.
- Affiliations
- Centre National de la Recherche Scientifique (FR)
- Corresponding author
- Bleves, Sophie
- Venue
- Journal of Biological Chemistry
- Publisher
- Elsevier BV
- Published
- 2026-05
- Volume
- 302
- Issue
- 5
- Pages
- 111416
- ISSN
- 0021-9258 (ISSN-L)
- OpenAlex
- W7147646136
- Cited by
- 0
- References
- 2
- FWCI
- 0.00
- Type
- journal article
- Language
- en
- Open access
- gold
- doi.org
- Licence
- Locations
- Journal of Biological Chemistry (publishedVersion, cc-by)
- bioRxiv (Cold Spring Harbor Laboratory) (acceptedVersion)
- PubMed (publishedVersion)
- PubMed Central (publishedVersion, cc-by)
- HAL (submittedVersion, other-oa)
- HAL (submittedVersion)
- Funders
- Defeating Cystic Fibrosis Association (RF20240503476/1/1/69)
- Foundation for Medical Research (FDT202404018453)
- French National Research Agency (ANR-21-CE11-0028)
- National Centre for Scientific Research
- Aix-Marseille University
- Topics
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Genetics › Bacterial Genetics and Biotechnology
- Life Sciences › Immunology and Microbiology › Microbiology › Vibrio bacteria research studies
- Life Sciences › Immunology and Microbiology › Microbiology › Escherichia coli research studies
- Keywords
- TLE1, Pseudomonas aeruginosa, type VI secretion system, immunity proteins, phospholipase, protein-protein interaction, ternary complex structure, outer membrane lipoprotein, pseudogenes, self-poisoning
- MeSH terms
- Bacterial Proteins, Bacterial Toxins, Models, Molecular, Pseudomonas aeruginosa
About these checks
Registry, retraction, Cites and statistics results are computed, not judged, with one exception: a printed reference that no index lists is read once by a model before it counts as a citation error. Claims are extracted by a model and kept only when their quote appears verbatim in the text; each cited source is then checked, with a model’s help, for whether it says what the claim relies on. Those verdicts can be wrong — read the claim’s quote and the cited source before relying on one.
Statistics and arithmetic are recomputed, not judged.
Confidence bands are shown only for fields calibrated on our annotated test set. None is calibrated yet, so no band is shown.
What counts as a claim ›How we measure confidence ›How we check this ›
Are you an author, or do you see a problem with this page? Request a review