Repression by Groucho/TLE/Grg Proteins: Genomic Site Recruitment Generates Compacted Chromatin In Vitro and Impairs Activator Binding In Vivo
Open accessAbstract
Groucho-related (Gro/TLE/Grg) corepressors meditate embryonic segmentation, dorsal-ventral patterning, neurogenesis, and Notch and Wnt signaling. Although Gro/TLE/Grgs disrupt activator complexes and recruit histone deacetylases (HDAC), activator complexes can be disrupted in various ways, HDAC recruitment does not account for full corepressor activity, and a direct role for Gro/TLE/Grg binding and altering chromatin structure has not been explored. Using diverse chromatin substrates in vitro, we show that Grg3 creates higher-order, condensed complexes of polynucleosome arrays. Surprisingly, such complexes are in an open, exposed configuration. We find that chromatin binding enables Grg3 recruitment by a transcription factor and the creation of a closed, poorly accessible domain spanning three to four nucleosomes. Targeted recruitment of Grg3 blankets a similar-sized region in vivo, impairing activator recruitment and repressing transcription. These activities of a Groucho protein represent a newly discovered mechanism which differs from that of other classes of corepressors.
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Pioneer activity may be required for a transcription factor to associate with sites within regions of the genome devoid of active histone marks.
“Thus, although our data suggest that the ability of mammalian transcription factors to interact with nucleosome-associated DNA is widespread, the ability to do so may rely on the presence of H3K4me1 or other ''active'' histone marks, and pioneer activity may be required for a transcription factor to associate with sites within regions of the genome devoid of such marks (Sekiya and Zaret 2007).”
From Locus co-occupancy, nucleosome positioning, and H3K4me1 regulate the functionality of FOXA2-, HNF4A-, and PDX1-bound loci in islets and liver (2010) · cites this paper as Sekiya and Zaret 2007
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Liu, J. K., DiPersio, C. M., & Zaret, K. S. (1991) · Molecular and Cellular Biology · doi:10.1128/mcb.11.2.773 · Cited by 168 · see citing works
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Pioneer transcription factors: establishing competence for gene expression
Zaret, K. S., & Carroll, J. S. (2011) · Genes & Development · doi:10.1101/gad.176826.111 · Cited by 1,589 · see citing works
Self-citationHoffman, B. G., Robertson, G., Zavaglia, B., Beach, M., Cullum, R., Lee, S., Soukhatcheva, G., Li, L., Wederell, E. D., Thiessen, N., et al. (2010) · Genome Research · doi:10.1101/gr.104356.109 · Cited by 115 · see citing works
Metzakopian, E., Lin, W., Salmon-Divon, M., Dvinge, H., Andersson, E., Ericson, J., Perlmann, T., Whitsett, J. A., Bertone, P., & Ang, S.-L. (2012) · Development · doi:10.1242/dev.081034 · Cited by 56 · see citing works
Cellular reprogramming in vivo initiated by SOX4 pioneer factor activity
Katsuda, T., Sussman, J. H., Ito, K., Katznelson, A., Yuan, S., Takenaka, N., Li, J., Merrell, A. J., Cure, H., Li, Q., et al. (2024) · Nature Communications · doi:10.1038/s41467-024-45939-z · Cited by 33 · see citing works
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- Authors
- Sekiya, T., & Zaret, K. S.
- Affiliations
- Fox Chase Cancer Center (US)
- Corresponding author
- Zaret, Kenneth S.
- ORCID
- Zaret, Kenneth S.
- Venue
- Molecular Cell
- Publisher
- Elsevier BV
- Published
- 2007-10
- Volume
- 28
- Issue
- 2
- Pages
- 291-303
- ISSN
- 1097-2765 (ISSN-L)
- PMC
- PMC2083644
- OpenAlex
- W2006198904
- Cited by
- 173
- References
- 1
- Citations by year
- 2026: 6 · 2025: 7 · 2024: 6 · 2023: 9 · 2022: 9 · 2021: 11 · 2020: 8 · 2019: 3 · 2018: 9 · 2017: 10 · 2016: 7 · 2015: 10 · 2014: 12 · 2013: 10 · 2012: 16
- FWCI
- 3.93
- Type
- journal article
- Language
- en
- Open access
- bronze
- doi.org
- Licence
- www.elsevier.com/tdm/userlicense/1.0/ (tdm)
- www.elsevier.com/legal/tdmrep-license (tdm)
- www.elsevier.com/open-access/userlicense/1.0/ (vor, 2116 d)
- doi.org/10.15223/policy-017 (stm-asf)
- doi.org/10.15223/policy-037 (stm-asf)
- doi.org/10.15223/policy-012 (stm-asf)
- doi.org/10.15223/policy-029 (stm-asf)
- doi.org/10.15223/policy-004 (stm-asf)
- Locations
- Molecular Cell (publishedVersion)
- PubMed (publishedVersion)
- PubMed Central (acceptedVersion)
- Funders
- Uehara Memorial Foundation
- National Institutes of Health
- Fox Chase Cancer Center
- Japan Society for the Promotion of Science
- National Cancer Institute
- National Institute of General Medical Sciences (R01GM047903, R37GM036477)
- Topics
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › Genomics and Chromatin Dynamics
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › Epigenetics and DNA Methylation
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › Chromatin Remodeling and Cancer
- Keywords
- chromatin condensation, nucleosome arrays, transcriptional repression, chromatin accessibility, transcription factor recruitment, chromatin structure
- MeSH terms
- Animals, Chlorocebus aethiops, Chromatin, Cricetulus, DNA-Binding Proteins, Enhancer Elements, Genetic, Cricetinae, Humans, Nucleic Acid Conformation, Nucleosomes, Promoter Regions, Genetic, Protein Conformation, Recombinant Proteins, Repressor Proteins, Transcription, Genetic, Transcriptional Activation, CHO Cells, Protein Structure, Tertiary, Homeodomain Proteins, COS Cells, Chromatin Assembly and Disassembly, Cell Line, Tumor, Mice, Hepatocyte Nuclear Factor 3-alpha, Hepatocyte Nuclear Factor 3-beta, Basic Helix-Loop-Helix Proteins
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