Partitioning of MLX-family transcription factors to lipid droplets regulates metabolic gene expression
Open accessAbstract
Lipid droplets (LDs) store lipids for energy and are central to cellular lipid homeostasis. The mechanisms coordinating lipid storage in LDs with cellular metabolism are unclear but relevant to obesity-related diseases. Here we utilized genome-wide screening to identify genes that modulate lipid storage in macrophages, a cell type involved in metabolic diseases. Among ∼550 identified screen hits is MLX, a basic helix-loop-helix leucine-zipper transcription factor that regulates metabolic processes. We show that MLX and glucose-sensing family members MLXIP/MondoA and MLXIPL/ChREBP bind LDs via C-terminal amphipathic helices. When LDs accumulate in cells, these transcription factors bind to LDs, reducing their availability for transcriptional activity and attenuating the response to glucose. Conversely, the absence of LDs results in hyperactivation of MLX target genes. Our findings uncover a paradigm for a lipid storage response in which binding of MLX transcription factors to LD surfaces adjusts the expression of metabolic genes to lipid storage levels.
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APOE was identified in subsequent studies of the lipid droplet proteome in mouse liver and THP-1 macrophages.
“APOE was identified in subsequent studies of the LD proteome in mouse liver and THP-1 macrophages (Krahmer et al., 2018; Mejhert et al., 2020).”
From APOE traffics to astrocyte lipid droplets and modulates triglyceride saturation and droplet size (2024) · cites this paper as Mejhert et al., 2020
The Results section, “Identification of LD Proteins in Human THP-1 Macrophages” (page unavailable), reports an LD-enriched proteomic analysis of THP-1 cells. The passages name several identified proteins but do not name APOE, so our copy does not establish that this study identified APOE in the LD proteome. (LLM, conf=0.77)
Experimental — accuracy not yet measured2099 overlapping proteins were identified and considered as LD-resident proteins by cross-referencing with six known lipid droplet proteomes.
“Upon cross-referencing our database with the six others, 2099 overlapping proteins were identified and considered as LD-resident proteins.”
From APOE4 reshapes the lipid droplet proteome and modulates microglial inflammatory responses (2025) · cites this paper as Mejhert et al., 2020
Split into 2 atoms — 0 confirmed, 2 partially supported, 0 disputed, 0 misattributed, 0 unverifiable. Expand the claim to see per-atom verdicts.
Experimental — accuracy not yet measuredBoth cell type and cellular environment modulate the lipid droplet proteome and lipidome.
“Importantly, both cell type and cellular environment modulate the lipid droplet proteome and lipidome3–9.”
From APOE genotypes differentially remodel the astrocytic lipid droplet proteome to shape lipid droplet dynamics (2026) · cites this paper as [9]
The Results (Systematic Classification of Regulators of Lipid Storage in Human Macrophages; page unavailable) report lipid droplets containing triglycerides and cholesterol esters after lipoprotein loading, and the Methods distinguish loading conditions that induce different lipid storage. The Results (Transcription Factor MLX Binds to LDs; page unavailable) show that oleate-induced droplet formation affects MLX localization. The paper does not establish the broader claim that both cell type and cellular environment modulate both the droplet proteome and lipidome. (LLM, conf=0.82)
Experimental — accuracy not yet measuredA few of these non-canonical functions have been associated with lipid droplets in other organisms like Drosophila melanogaster and in other cell systems.
“Interestingly, a few of these non-canonical functions have been associated with lipid droplets in other organisms like Drosophila melanogaster46,66 and in other cell systems3,9.”
From APOE genotypes differentially remodel the astrocytic lipid droplet proteome to shape lipid droplet dynamics (2026) · cites this paper as [9]
Genetic knockdown studies show RUFY2 influences lipid droplet morphology and distribution.
“Genetic knockdown studies show RUFY2 influences lipid droplet morphology and distribution9,41, hinting at a potential link between vesicle trafficking defects69 and altered lipid biology in astrocytes, particularly in neurodegenerative contexts.”
From APOE genotypes differentially remodel the astrocytic lipid droplet proteome to shape lipid droplet dynamics (2026) · cites this paper as [9]
The Results section describes an RNAi screen measuring lipid-droplet size, shape, and dispersion, but the passages available from our copy do not identify RUFY2 as a hit or report its knockdown phenotype. Searches for RUFY2 and for RUFY2 knockdown effects on lipid droplets found no passage establishing the claimed effect. (LLM, conf=0.72)
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Cites
Genome engineering using the CRISPR-Cas9 system
Ran, F. A., Hsu, P. D., Wright, J., Agarwala, V., Scott, D. A., & Zhang, F. (2013) · Nature Protocols · doi:10.1038/nprot.2013.143 · Cited by 11,133 · see citing works
The Phyre2 web portal for protein modeling, prediction and analysis
Kelley, L. A., Mezulis, S., Yates, C. M., Wass, M. N., & Sternberg, M. J. E. (2015) · Nature Protocols · doi:10.1038/nprot.2015.053 · Cited by 9,652 · see citing works
TFEB Links Autophagy to Lysosomal Biogenesis
Settembre, C., Di Malta, C., Polito, V. A., Arencibia, M. G., Vetrini, F., Erdin, S., Erdin, S. U., Huynh, T., Medina, D., Colella, P., et al. (2011) · Science · doi:10.1126/science.1204592 · Cited by 3,365 · see citing works
Protein 3D Structure Computed from Evolutionary Sequence Variation
Marks, D. S., Colwell, L. J., Sheridan, R., Hopf, T. A., Pagnani, A., Zecchina, R., & Sander, C. (2011) · PLoS ONE · doi:10.1371/journal.pone.0028766 · Cited by 1,144 · see citing works
Cloning of DGAT2, a Second Mammalian Diacylglycerol Acyltransferase, and Related Family Members
Cases, S., Stone, S. J., Zhou, P., Yen, E., Tow, B., Lardizabal, K. D., Voelker, T., & Farese, R. V. (2001) · Journal of Biological Chemistry · doi:10.1074/jbc.m106219200 · Cited by 818 · see citing works
Self-citationBenhamed, F., Denechaud, P.-D., Lemoine, M., Robichon, C., Moldes, M., Bertrand-Michel, J., Ratziu, V., Serfaty, L., Housset, C., Capeau, J., et al. (2012) · Journal of Clinical Investigation · doi:10.1172/jci41636 · Cited by 408 · cited 1× · see citing works
“In contrast, MLX and MLXIPL are predominantly expressed in white adipose tissue and liver where they control the transcription of enzymes regulating de novo lipogenesis (Benhamed et al., 2012; Dentin et al., 2006; Herman et al., 2012; Iizuka et al., 2004; Vijayakumar et al., 2017).”
BackgroundDGAT2 Is a New Diacylglycerol Acyltransferase Gene Family
Lardizabal, K. D., Mai, J. T., Wagner, N. W., Wyrick, A., Voelker, T., & Hawkins, D. J. (2001) · Journal of Biological Chemistry · doi:10.1074/jbc.m106168200 · Cited by 371 · see citing works
Stoltzman, C. A., Peterson, C. W., Breen, K. T., Muoio, D. M., Billin, A. N., & Ayer, D. E. (2008) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.0712199105 · Cited by 283 · see citing works
Flagged first, then by citations
Research works printed but not linked: 100
- Abdul-Wahed A, Guilmeau S, and Postic C (2017). Sweet Sixteenth for ChREBP: Established Roles and Future Goals. Cell Metab 26, 324– 341. 28768172
- Accad M, Smith SJ, Newland DL, Sanan DA, King LE, Linton MF, Fazio S, and Farese RV (2000). Massive xanthomatosis and altered composition of atherosclerotic lesions in hyperlipidemic mice lacking acyl CoA:cholesterol acyltransferase 1. J. Clin. Invest 105, 711– 719. 10727439 PMC377465
- Ahn B, Soundarapandian MM, Sessions H, Peddibhotla S, Roth GP, Li J-L, Sugarman E, Koo A, Malany S, Wang M, (2016). MondoA coordinately regulates skeletal myocyte lipid homeostasis and insulin signaling. J. Clin. Invest 126, 3567– 3579. 27500491 PMC5004938
- Altschul SF, Gish W, Miller W, Myers EW, and Lipman DJ (1990). Basic local alignment search tool. J. Mol. Biol 215, 403– 410. 2231712
- Basu SK, Goldstein JL, Anderson GW, and Brown MS (1976). Degradation of cationized low density lipoprotein and regulation of cholesterol metabolism in homozygous familial hypercholesterolemia fibroblasts. Proc. Natl. Acad. Sci. U. S. A 73, 3178– 3182. 184464 PMC430973
- Bersuker K, Peterson CWH, To M, Sahl SJ, Savikhin V, Grossman EA, Nomura DK, and Olzmann JA (2018). A Proximity Labeling Strategy Provides Insights into the Composition and Dynamics of Lipid Droplet Proteomes. Dev. Cell 44, 97– 112. e7. 29275994 PMC5764092
- Billin AN, Eilers AL, Queva C, and Ayer DE (1999). Mlx, a novel Max-like BHLHZip protein that interacts with the Max network of transcription factors. J. Biol. Chem 274, 36344– 36350. 10593926
- Billin AN, Eilers AL, Coulter KL, Logan JS, and Ayer DE (2000). MondoA, a novel basic helix-loop-helix-leucine zipper transcriptional activator that constitutes a positive branch of a max-like network. Mol. Cell. Biol 20, 8845– 8854. 11073985 PMC86535
- Brasaemle DL, Barber T, Wolins NE, Serrero G, Blanchette-Mackie EJ, and Londos C (1997). Adipose differentiation-related protein is an ubiquitously expressed lipid storage droplet-associated protein. J. Lipid Res 38, 2249– 2263. 9392423
- Briggs MR, Yokoyama C, Wang X, Brown MS, and Goldstein JL (1993). Nuclear protein that binds sterol regulatory element of low density lipoprotein receptor promoter. I. Identification of the protein and delineation of its target nucleotide sequence. J. Biol. Chem 268, 14490– 14496. 8390995
- Cairo S, Merla G, Urbinati F, Ballabio A, and Reymond A (2001). WBSCR14, a gene mapping to the Williams--Beuren syndrome deleted region, is a new member of the Mlx transcription factor network. Hum. Mol. Genet 10, 617– 627. 11230181
- Carpenter AE, Jones TR, Lamprecht MR, Clarke C, Kang IH, Friman O, Guertin DA, Chang JH, Lindquist RA, Moffat J, (2006). CellProfiler: image analysis software for identifying and quantifying cell phenotypes. Genome Biol 7, R100. 17076895 PMC1794559
- Cases S, Smith SJ, Zheng YW, Myers HM, Lear SR, Sande E, Novak S, Collins C, Welch CB, Lusis AJ, (1998). Identification of a gene encoding an acyl CoA:diacylglycerol acyltransferase, a key enzyme in triacylglycerol synthesis. Proc. Natl. Acad. Sci. U. S. A 95, 13018– 13023. 9789033 PMC23692
- Chen J, Bardes EE, Aronow BJ, and Jegga AG (2009). ToppGene Suite for gene list enrichment analysis and candidate gene prioritization. Nucleic Acids Res 37, W305– 11. 19465376 PMC2703978
- Chitraju C, Mejhert N, Haas JT, Diaz-Ramirez LG, Grueter CA, Imbriglio JE, Pinto S, Koliwad SK, Walther TC, and Farese RV (2017). Triglyceride Synthesis by DGAT1 Protects Adipocytes from Lipid-Induced ER Stress during Lipolysis. Cell Metab 26, 407– 418. e3. 28768178 PMC6195226
- Cong L, Ran FA, Cox D, Lin S, Barretto R, Habib N, Hsu PD, Wu X, Jiang W, Marraffini LA, (2013). Multiplex Genome Engineering Using CRISPR/Cas Systems. Science (80-.) 339, 819– 823. PMC3795411 23287718
- Čopič A, Antoine-Bally S, Giménez-Andrés M, La Torre Garay C, Antonny B, Manni MM, Pagnotta S, Guihot J, and Jackson CL (2018). A giant amphipathic helix from a perilipin that is adapted for coating lipid droplets. Nat. Commun 9, 1332. 29626194 PMC5889406
- Cox J, and Mann M (2008). MaxQuant enables high peptide identification rates, individualized p.p.b.-range mass accuracies and proteome-wide protein quantification. Nat. Biotechnol 26, 1367– 1372. 19029910
- Cox J, Neuhauser N, Michalski A, Scheltema RA, Olsen JV, and Mann M (2011). Andromeda: a peptide search engine integrated into the MaxQuant environment. J. Proteome Res 10, 1794– 1805. 21254760
- Cox JS, Shamu CE, and Walter P (1993). Transcriptional induction of genes encoding endoplasmic reticulum resident proteins requires a transmembrane protein kinase. Cell 73, 1197– 1206. 8513503
- Dalvai M, Loehr J, Jacquet K, Huard CC, Roques C, Herst P, Côté J, and Doyon Y (2015). A Scalable Genome-Editing-Based Approach for Mapping Multiprotein Complexes in Human Cells. Cell Rep 13, 621– 633. 26456817
- Davies MN, O’Callaghan BL, and Towle HC (2008). Glucose activates ChREBP by increasing its rate of nuclear entry and relieving repression of its transcriptional activity. J. Biol. Chem 283, 24029– 24038. 18591247 PMC2527113
- Deisenroth C, Itahana Y, Tollini L, Jin A, and Zhang Y (2011). p53-inducible DHRS3 Is an Endoplasmic Reticulum Protein Associated with Lipid Droplet Accumulation. J. Biol. Chem 286, 28343– 28356. 21659514 PMC3151078
- Dentin R, Benhamed F, Hainault I, Fauveau V, Foufelle F, Dyck JRB, Girard J, and Postic C (2006). Liver-Specific Inhibition of ChREBP Improves Hepatic Steatosis and Insulin Resistance in ob/ob Mice. Diabetes 55, 2159– 2170. 16873678
- Eilers AL, Sundwall E, Lin M, Sullivan AA, and Ayer DE (2002). A novel heterodimerization domain, CRM1, and 14–3-3 control subcellular localization of the MondoA-Mlx heterocomplex. Mol. Cell. Biol 22, 8514– 8526. 12446771 PMC139889
- Fazio S, Major AS, Swift LL, Gleaves LA, Accad M, Linton MF, and Farese RV (2001). Increased atherosclerosis in LDL receptor-null mice lacking ACAT1 in macrophages. J. Clin. Invest 107, 163– 171. 11160132 PMC198874
- Fei W, Shui G, Gaeta B, Du X, Kuerschner L, Li P, Brown AJ, Wenk MR, Parton RG, and Yang H (2008). Fld1p, a functional homologue of human seipin, regulates the size of lipid droplets in yeast. J. Cell Biol 180, 473– 482. 18250201 PMC2234226
- Folch J, Lees M, and Sloane Stanley GH (1957). A simple method for the isolation and purification of total lipides from animal tissues. J. Biol. Chem 226, 497– 509. 13428781
- Fröhlich F, Petit C, Kory N, Christiano R, Hannibal-Bach H-K, Graham M, Liu X, Ejsing CS, Farese RV, and Walther TC (2015). The GARP complex is required for cellular sphingolipid homeostasis. Elife 4. PMC4600884 26357016
- Gautier R, Douguet D, Antonny B, and Drin G (2008). HELIQUEST: a web server to screen sequences with specific alpha-helical properties. Bioinformatics 24, 2101– 2102. 18662927
- Guo Y, Walther TC, Rao M, Stuurman N, Goshima G, Terayama K, Wong JS, Vale RD, Walter P, and Farese RV (2008). Functional genomic screen reveals genes involved in lipid-droplet formation and utilization. Nature 453, 657– 661. 18408709 PMC2734507
- He K, Marsland R, Upadhyayula S, Song E, Dang S, Capraro BR, Wang W, Skillern W, Gaudin R, Ma M, (2017). Dynamics of phosphoinositide conversion in clathrin-mediated endocytic traffic. Nature 552, 410– 414. 29236694 PMC6263037
- Henne WM, Reese ML, and Goodman JM (2018). The assembly of lipid droplets and their roles in challenged cells. EMBO J 37, e98947. 29789390 PMC6003646
- Herman MA, Peroni OD, Villoria J, Schön MR, Abumrad NA, Blüher M, Klein S, and Kahn BB (2012). A novel ChREBP isoform in adipose tissue regulates systemic glucose metabolism. Nature 484, 333– 338. 22466288 PMC3341994
- de Hoon MJL, Imoto S, Nolan J, and Miyano S (2004). Open source clustering software. Bioinformatics 20, 1453– 1454. 14871861
- Hua X, Yokoyama C, Wu J, Briggs MR, Brown MS, Goldstein JL, and Wang X (1993). SREBP-2, a second basic-helix-loop-helix-leucine zipper protein that stimulates transcription by binding to a sterol regulatory element. Proc. Natl. Acad. Sci. U. S. A 90, 11603– 11607. 7903453 PMC48032
- Iizuka K, Bruick RK, Liang G, Horton JD, and Uyeda K (2004). Deficiency of carbohydrate response element-binding protein (ChREBP) reduces lipogenesis as well as glycolysis. Proc. Natl. Acad. Sci 101, 7281– 7286. 15118080 PMC409910
- Iizuka K, Takeda J, and Horikawa Y (2009). Hepatic overexpression of dominant negative Mlx improves metabolic profile in diabetes-prone C57BL/6J mice. Biochem. Biophys. Res. Commun 379, 499– 504. 19121288
- Imbriglio JE, Shen D-M, Liang R, Marby K, You M, Youm HW, Feng Z, London C, Xiong Y, Tata J, (2015). Discovery and Pharmacology of a Novel Class of Diacylglycerol Acyltransferase 2 Inhibitors. J. Med. Chem 58, 9345– 9353. 26561979
- Ishibashi K, Sasaki S, Fushimi K, Uchida S, Kuwahara M, Saito H, Furukawa T, Nakajima K, Yamaguchi Y, and Gojobori T (1994). Molecular cloning and expression of a member of the aquaporin family with permeability to glycerol and urea in addition to water expressed at the basolateral membrane of kidney collecting duct cells. Proc. Natl. Acad. Sci. U. S. A 91, 6269– 6273. 7517548 PMC44182
- Jayson CBK, Arlt H, Fischer AW, Lai ZW, Farese RV, and Walther TC (2018). Rab18 is not necessary for lipid droplet biogenesis or turnover in human mammary carcinoma cells. Mol. Biol. Cell 29, 2045– 2054. 29949452 PMC6232964
- Kawaguchi T, Takenoshita M, Kabashima T, and Uyeda K (2001). Glucose and cAMP regulate the L-type pyruvate kinase gene by phosphorylation/dephosphorylation of the carbohydrate response element binding protein. Proc. Natl. Acad. Sci. U. S. A 98, 13710– 13715. 11698644 PMC61106
- Koliwad SK, Streeper RS, Monetti M, Cornelissen I, Chan L, Terayama K, Naylor S, Rao M, Hubbard B, and Farese RV (2010). DGAT1-dependent triacylglycerol storage by macrophages protects mice from diet-induced insulin resistance and inflammation. J. Clin. Invest 120, 756– 767. 20124729 PMC2827941
- Kory N, Thiam A-R, Farese RV, and Walther TC (2015). Protein Crowding Is a Determinant of Lipid Droplet Protein Composition. Dev. Cell 34, 351– 363. 26212136 PMC4536137
- Kory N, Farese RV, and Walther TC (2016). Targeting Fat: Mechanisms of Protein Localization to Lipid Droplets. Trends Cell Biol 26, 535– 546. 26995697 PMC4976449
- Krahmer N, Farese RV, and Walther TC (2013). Balancing the fat: lipid droplets and human disease. EMBO Mol. Med 5, 973– 983. 23740690 PMC3721468
- Krahmer N, Najafi B, Schueder F, Quagliarini F, Steger M, Seitz S, Kasper R, Salinas F, Cox J, Uhlenhaut NH, (2018). Organellar Proteomics and Phospho-Proteomics Reveal Subcellular Reorganization in Diet-Induced Hepatic Steatosis. Dev. Cell 47, 205– 221. e7. 30352176
- Lee YS, Wollam J, and Olefsky JM (2018). An Integrated View of Immunometabolism. Cell 172, 22– 40. 29328913 PMC8451723
- Lehner R, and Vance DE (1999). Cloning and expression of a cDNA encoding a hepatic microsomal lipase that mobilizes stored triacylglycerol. Biochem. J 343 Pt 1, 1– 10. 10493905 PMC1220517
- Listenberger LL, Han X, Lewis SE, Cases S, Farese RV, Ory DS, and Schaffer JE (2003). Triglyceride accumulation protects against fatty acid-induced lipotoxicity. Proc. Natl. Acad. Sci. U. S. A 100, 3077– 3082. 12629214 PMC152249
- Liu J, Gorski JN, Gold SJ, Chen D, Chen S, Forrest G, Itoh Y, Marsh DJ, McLaren DG, Shen Z, (2013). Pharmacological inhibition of diacylglycerol acyltransferase 1 reduces body weight and modulates gut peptide release-Potential insight into mechanism of action. Obesity 21, 1406– 1415. 23671037
- Liu P, Ying Y, Zhao Y, Mundy DI, Zhu M, and Anderson RGW (2004). Chinese Hamster Ovary K2 Cell Lipid Droplets Appear to Be Metabolic Organelles Involved in Membrane Traffic. J. Biol. Chem 279, 3787– 3792. 14597625
- Love MI, Huber W, and Anders S (2014). Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2. Genome Biol 15, 550. 25516281 PMC4302049
- de Luis O, Valero MC, and Pérez Jurado LA (2000). WBSCR14, a putative transcription factor gene deleted in Williams-Beuren syndrome: complete characterisation of the human gene and the mouse ortholog. Eur. J. Hum. Genet 8, 215– 222. 10780788
- Ma L, Tsatsos NG, and Towle HC (2005). Direct role of ChREBP.Mlx in regulating hepatic glucose-responsive genes. J. Biol. Chem 280, 12019– 12027. 15664996
- Martin S, Driessen K, Nixon SJ, Zerial M, and Parton RG (2005). Regulated Localization of Rab18 to Lipid Droplets. J. Biol. Chem 280, 42325– 42335. 16207721
- Matsumoto M, Pocai A, Rossetti L, Depinho RA, and Accili D (2007). Impaired regulation of hepatic glucose production in mice lacking the forkhead transcription factor Foxo1 in liver. Cell Metab 6, 208– 216. 17767907
- McGuffin LJ, Bryson K, and Jones DT (2000). The PSIPRED protein structure prediction server. Bioinformatics 16, 404– 405. 10869041
- McKenna ES, Tamayo P, Cho Y-J, Tillman EJ, Mora-Blanco EL, Sansam CG, Koellhoffer EC, Pomeroy SL, and Roberts CWM (2012). Epigenetic inactivation of the tumor suppressor BIN1 drives proliferation of SNF5-deficient tumors. Cell Cycle 11, 1956– 1965. 22544318 PMC3359122
- Meroni G, Cairo S, Merla G, Messali S, Brent R, Ballabio A, and Reymond A (2000). Mlx, a new Max-like bHLHZip family member: the center stage of a novel transcription factors regulatory pathway? Oncogene 19, 3266– 3277. 10918583
- Minn AH, Hafele C, and Shalev A (2005). Thioredoxin-Interacting Protein Is Stimulated by Glucose through a Carbohydrate Response Element and Induces β-Cell Apoptosis. Endocrinology 146, 2397– 2405. 15705778
- Moessinger C, Kuerschner L, Spandl J, Shevchenko A, and Thiele C (2011). Human lysophosphatidylcholine acyltransferases 1 and 2 are located in lipid droplets where they catalyze the formation of phosphatidylcholine. J. Biol. Chem 286, 21330– 21339. 21498505 PMC3122193
- Moore KJ, Sheedy FJ, and Fisher EA (2013). Macrophages in atherosclerosis: a dynamic balance. Nat. Rev. Immunol 13, 709– 721. 23995626 PMC4357520
- Mori K, Ma W, Gething MJ, and Sambrook J (1993). A transmembrane protein with a cdc2+/CDC28-related kinase activity is required for signaling from the ER to the nucleus. Cell 74, 743– 756. 8358794
- Morigny P, Houssier M, Mairal A, Ghilain C, Mouisel E, Benhamed F, Masri B, Recazens E, Denechaud P-D, Tavernier G, (2019). Interaction between hormone-sensitive lipase and ChREBP in fat cells controls insulin sensitivity. Nat. Metab 1, 133– 146. 32694809
- Olzmann JA, and Carvalho P (2018). Dynamics and functions of lipid droplets. Nat. Rev. Mol. Cell Biol PMC6746329 30523332
- Ozeki S, Cheng J, Tauchi-Sato K, Hatano N, Taniguchi H, and Fujimoto T (2005). Rab18 localizes to lipid droplets and induces their close apposition to the endoplasmic reticulum-derived membrane. J. Cell Sci 118, 2601– 2611. 15914536
- Pataki CI, Rodrigues J, Zhang L, Qian J, Efron B, Hastie T, Elias JE, Levitt M, and Kopito RR (2018). Proteomic analysis of monolayer-integrated proteins on lipid droplets identifies amphipathic interfacial α-helical membrane anchors. Proc. Natl. Acad. Sci. U. S. A 115, E8172– E8180. 30104359 PMC6126764
- Patro R, Duggal G, Love MI, Irizarry RA, and Kingsford C (2017). Salmon provides fast and bias-aware quantification of transcript expression. Nat. Methods 14, 417– 419. 28263959 PMC5600148
- Prévost C, Sharp ME, Kory N, Lin Q, Voth GA, Farese RV, and Walther TC (2018). Mechanism and Determinants of Amphipathic Helix-Containing Protein Targeting to Lipid Droplets. Dev. Cell 44, 73– 86. e4. 29316443 PMC5764114
- Rappsilber J, Ishihama Y, and Mann M (2003). Stop and go extraction tips for matrix-assisted laser desorption/ionization, nanoelectrospray, and LC/MS sample pretreatment in proteomics. Anal. Chem 75, 663– 670. 12585499
- Richards P, Ourabah S, Montagne J, Burnol A-F, Postic C, and Guilmeau S (2017). MondoA/ChREBP: The usual suspects of transcriptional glucose sensing; Implication in pathophysiology. Metabolism 70, 133– 151. 28403938
- Richards P, Rachdi L, Oshima M, Marchetti P, Bugliani M, Armanet M, Postic C, Guilmeau S, and Scharfmann R (2018). MondoA Is an Essential Glucose-Responsive Transcription Factor in Human Pancreatic β-Cells. Diabetes 67, 461– 472. 29282201
- Romanauska A, and Köhler A (2018). The Inner Nuclear Membrane Is a Metabolically Active Territory that Generates Nuclear Lipid Droplets. Cell 174, 700– 715. e18. 29937227 PMC6371920
- Rosen ED, and Spiegelman BM (2014). What We Talk About When We Talk About Fat. Cell 156, 20– 44. 24439368 PMC3934003
- Sae-Lee C, Moolsuwan K, Chan L, and Poungvarin N (2016). ChREBP Regulates Itself and Metabolic Genes Implicated in Lipid Accumulation in β-Cell Line. PLoS One 11, e0147411. 26808438 PMC4725739
- Saldanha AJ (2004). Java Treeview--extensible visualization of microarray data. Bioinformatics 20, 3246– 3248. 15180930
- Sans CL, Satterwhite DJ, Stoltzman CA, Breen KT, and Ayer DE (2006). MondoA-Mlx Heterodimers Are Candidate Sensors of Cellular Energy Status: Mitochondrial Localization and Direct Regulation of Glycolysis. Mol. Cell. Biol 26, 4863– 4871. 16782875 PMC1489152
- Sardiello M, Palmieri M, di Ronza A, Medina DL, Valenza M, Gennarino VA, Di Malta C, Donaudy F, Embrione V, Polishchuk RS, (2009). A Gene Network Regulating Lysosomal Biogenesis and Function. Science (80-.) 325, 473– 477. 19556463
- Schindelin J, Arganda-Carreras I, Frise E, Kaynig V, Longair M, Pietzsch T, Preibisch S, Rueden C, Saalfeld S, Schmid B, (2012). Fiji: an open-source platform for biological-image analysis. Nat. Methods 9, 676– 682. 22743772 PMC3855844
- Schneider TD, and Stephens RM (1990). Sequence logos: a new way to display consensus sequences. Nucleic Acids Res 18, 6097– 6100. 2172928 PMC332411
- Shannon P, Markiel A, Ozier O, Baliga NS, Wang JT, Ramage D, Amin N, Schwikowski B, and Ideker T (2003). Cytoscape: A Software Environment for Integrated Models of Biomolecular Interaction Networks. Genome Res 13, 2498. 14597658 PMC403769
- van der Sluijs P, Hull M, Webster P, Mâle P, Goud B, and Mellman I (1992). The small GTP-binding protein rab4 controls an early sorting event on the endocytic pathway. Cell 70, 729– 740. 1516131
- Soneson C, Love MI, and Robinson MD (2015). Differential analyses for RNA-seq: transcript-level estimates improve gene-level inferences. F1000Research 4, 1521. 26925227 PMC4712774
- Szymanski KM, Binns D, Bartz R, Grishin NV, Li W-P, Agarwal AK, Garg A, Anderson RGW, and Goodman JM (2007). The lipodystrophy protein seipin is found at endoplasmic reticulum lipid droplet junctions and is important for droplet morphology. Proc. Natl. Acad. Sci. U. S. A 104, 20890– 20895. 18093937 PMC2409237
- Tabas I, and Bornfeldt KE (2016). Macrophage Phenotype and Function in Different Stages of Atherosclerosis. Circ. Res 118, 653– 667. 26892964 PMC4762068
- Thiam AR, Antonny B, Wang J, Delacotte J, Wilfling F, Walther TC, Beck R, Rothman JE, and Pincet F (2013). COPI buds 60-nm lipid droplets from reconstituted water-phospholipid-triacylglyceride interfaces, suggesting a tension clamp function. Proc. Natl. Acad. Sci. U. S. A 110, 13244– 13249. 23901109 PMC3746913
- Uyeda K, and Repa JJ (2006). Carbohydrate response element binding protein, ChREBP, a transcription factor coupling hepatic glucose utilization and lipid synthesis. Cell Metab 4, 107– 110. 16890538
- Vijayakumar A, Aryal P, Wen J, Syed I, Vazirani RP, Moraes-Vieira PM, Camporez JP, Gallop MR, Perry RJ, Peroni OD, (2017). Absence of Carbohydrate Response Element Binding Protein in Adipocytes Causes Systemic Insulin Resistance and Impairs Glucose Transport. Cell Rep 21, 1021– 1035. 29069585 PMC5771491
- Villanueva CJ, Monetti M, Shih M, Zhou P, Watkins SM, Bhanot S, and Farese RV (2009). Specific role for acyl CoA:Diacylglycerol acyltransferase 1 (Dgat1) in hepatic steatosis due to exogenous fatty acids. Hepatology 50, 434– 442. 19472314 PMC3097135
- Vizcaíno JA, Csordas A, Del-Toro N, Dianes JA, Griss J, Lavidas I, Mayer G, Perez-Riverol Y, Reisinger F, Ternent T, (2016). 2016 update of the PRIDE database and its related tools. Nucleic Acids Res 44, 11033. 27683222 PMC5159556
- Walther TC, Chung J, and Farese RV (2017). Lipid Droplet Biogenesis. Annu. Rev. Cell Dev. Biol 33, 491– 510. 28793795 PMC6986389
- Wang H, Becuwe M, Housden BE, Chitraju C, Porras AJ, Graham MM, Liu XN, Thiam AR, Savage DB, Agarwal AK, (2016). Seipin is required for converting nascent to mature lipid droplets. Elife 5. PMC5035145 27564575
- Wang X, Briggs MR, Hua X, Yokoyama C, Goldstein JL, and Brown MS (1993). Nuclear protein that binds sterol regulatory element of low density lipoprotein receptor promoter. II. Purification and characterization. J. Biol. Chem 268, 14497– 14504. 8314806
- Wang X, Sato R, Brown MS, Hua X, and Goldstein JL (1994). SREBP-1, a membrane-bound transcription factor released by sterol-regulated proteolysis. Cell 77, 53– 62. 8156598
- Waterhouse AM, Procter JB, Martin DMA, Clamp M, and Barton GJ (2009). Jalview Version 2--a multiple sequence alignment editor and analysis workbench. Bioinformatics 25, 1189– 1191. 19151095 PMC2672624
- Wessel D, and Flügge UI (1984). A method for the quantitative recovery of protein in dilute solution in the presence of detergents and lipids. Anal. Biochem 138, 141– 143. 6731838
- Wilde BR, Ye Z, Lim T-Y, and Ayer DE (2019). Cellular acidosis triggers human MondoA transcriptional activity by driving mitochondrial ATP production. Elife 8. PMC6363388 30717828
- Wu N, Zheng B, Shaywitz A, Dagon Y, Tower C, Bellinger G, Shen C-H, Wen J, Asara J, McGraw TE, (2013). AMPK-dependent degradation of TXNIP upon energy stress leads to enhanced glucose uptake via GLUT1. Mol. Cell 49, 1167– 1175. 23453806 PMC3615143
- Yamashita H, Takenoshita M, Sakurai M, Bruick RK, Henzel WJ, Shillinglaw W, Arnot D, and Uyeda K (2001). A glucose-responsive transcription factor that regulates carbohydrate metabolism in the liver. Proc. Natl. Acad. Sci 98, 9116– 9121. 11470916 PMC55382
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APOE traffics to astrocyte lipid droplets and modulates triglyceride saturation and droplet size
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Cuní-López, C., Root, J. T., Hao, Y., Blomberg, N., Koppes-den Hertog, S. J., Sacks, D., Trujillo, A. E., Ghirlando, R., Kowal, I., Epstein, J., et al. (2026) · Nature Communications · doi:10.1038/s41467-026-76565-6
- Authors
- Mejhert, N., Kuruvilla, L., Gabriel, K. R., Elliott, S. D., Guie, M.-A., Wang, H., Lai, Z. W., Lane, E. A., Christiano, R., Danial, N. N., Farese, R. V., & Walther, T. C.
- Affiliations
- Harvard University (US)
- Yale University (US)
- Howard Hughes Medical Institute (US)
- Broad Institute (US)
- Corresponding author
- Farese, Robert V.
- Walther, Tobias C.
- ORCID
- Venue
- Molecular Cell
- Publisher
- Elsevier BV
- Published
- 2020-03
- Volume
- 77
- Issue
- 6
- Pages
- 1251-1264.e9
- ISSN
- 1097-2765 (ISSN-L)
- PMC
- PMC7397554
- OpenAlex
- W3005380228
- Cited by
- 121
- References
- 8
- Citations by year
- 2026: 17 · 2025: 22 · 2024: 16 · 2023: 18 · 2022: 20 · 2021: 22 · 2020: 6
- FWCI
- 7.02
- Type
- journal article
- Language
- en
- Open access
- bronze
- doi.org
- Licence
- Locations
- Molecular Cell (publishedVersion)
- PubMed (publishedVersion)
- PubMed Central (acceptedVersion)
- Funders
- H2020 Marie Skłodowska-Curie Actions
- G. Harold and Leila Y. Mathers Foundation (SUM159)
- National Institutes of Health (5R01GM124348, R01GM097194)
- Merck
- Topics
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Biochemistry › Lipid metabolism and biosynthesis
- Health Sciences › Medicine › Cardiology and Cardiovascular Medicine › Lipid metabolism and disorders
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Cancer Research › Cancer, Lipids, and Metabolism
- Keywords
- lipid droplets, amphipathic helix, macrophages, fat deposition, glucose detection, metabolic gene expression, obesity, lipid homeostasis, transcriptional regulation
- MeSH terms
- Cells, Cultured, Gene Expression Regulation, Genetic Testing, Glucose, Humans, Macrophages, Protein Binding, Transcription, Genetic, Proteome, RNA, Small Interfering, Basic Helix-Loop-Helix Leucine Zipper Transcription Factors, Lipid Droplets
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