All’s well that transcribes well: Non-coding RNAs and post-stroke brain damage
Open accessAbstract
The mammalian genome is replete with various classes of non-coding (nc) RNA genes. Many of them actively transcribe, and their relevance to CNS diseases is just beginning to be understood. CNS is one of the organs in the body that shows very high ncRNAs activity. Recent studies demonstrated that cerebral ischemia rapidly changes the expression profiles of different classes of ncRNAs: including microRNA, long noncoding RNA and piwi-interacting RNA. Several studies further showed that post-ischemic neuronal death and/or plasticity/regeneration can be altered by modulating specific microRNAs. These studies are of interest for therapeutic development as they may contribute to identifying new ncRNA targets that can be modulated to prevent secondary brain damage after stroke.
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miRNAs are critical mediators of ischemia.
“Among these RNAs, miRNAs are the most studied of all ncRNAs as critical mediator of ischemia4,5.”
From Long non-coding RNA MEG3 functions as a competing endogenous RNA to regulate ischemic neuronal death by targeting miR-21/PDCD4 signaling pathway (2017) · cites this paper as [5]
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- Adachi T Nakanishi M Otsuka Y Nishimura K Hirokawa G Goto Y Nonogi H Iwai N Plasma microRNA 499 as a biomarker of acute myocardial infarction Clinical chemistry 2010 56 1183 1185 20395621
- Ambros V The functions of animal microRNAs Nature 2004 431 350 355 15372042
- Baker WH Howard VJ Howard G Toole JF Effect of contralateral occlusion on long-term efficacy of endarterectomy in the asymptomatic carotid atherosclerosis study (ACAS). ACAS Investigators Stroke 2000 31 2330 2334 11022059
- Balakathiresan N Bhomia M Chandran R Chavko M McCarron RM Maheshwari RK MicroRNA let-7i is a promising serum biomarker for blast-induced traumatic brain injury Journal of neurotrauma 2012 29 1379 1387 22352906 PMC3335133
- Bales JW Wagner AK Kline AE Dixon CE Persistent cognitive dysfunction after traumatic brain injury: A dopamine hypothesis Neuroscience and biobehavioral reviews 2009 33 981 1003 19580914 PMC2806224
- Barone FC White RF Spera PA Ellison J Currie RW Wang X Feuerstein GZ Ischemic preconditioning and brain tolerance: temporal histological and functional outcomes, protein synthesis requirement, and interleukin-1 receptor antagonist and early gene expression Stroke 1998 29 1937 1950 discussion 1950-1931 9731622
- Barreto GE White RE Xu L Palm CJ Giffard RG Effects of heat shock protein 72 (Hsp72) on evolution of astrocyte activation following stroke in the mouse Experimental neurology 2012 238 284 296 22940431 PMC3498584
- Bellenchi GC Volpicelli F Piscopo V Perrone-Capano C di Porzio U Adult neural stem cells: an endogenous tool to repair brain injury? Journal of neurochemistry 2013 124 159 167 23134340
- Berezikov E Evolution of microRNA diversity and regulation in animals Nature reviews. Genetics 2011 12 846 860 22094948
- Bernaudin M Tang Y Reilly M Petit E Sharp FR Brain genomic response following hypoxia and re-oxygenation in the neonatal rat. Identification of genes that might contribute to hypoxia-induced ischemic tolerance J Biol Chem 2002 277 39728 39738 12145288
- Bhalala OG Pan L Sahni V McGuire TL Gruner K Tourtellotte WG Kessler JA microRNA-21 regulates astrocytic response following spinal cord injury The Journal of neuroscience: the official journal of the Society for Neuroscience 2012 32 17935 17947 23238710 PMC3538038
- Bidzhekov K Gan L Denecke B Rostalsky A Hristov M Koeppel TA Zernecke A Weber C microRNA expression signatures and parallels between monocyte subsets and atherosclerotic plaque in humans Thrombosis and haemostasis 2012 107 619 625 22370758
- Blennow K Hardy J Zetterberg H The neuropathology and neurobiology of traumatic brain injury Neuron 2012 76 886 899 23217738
- Carmichael ST Gene expression changes after focal stroke, traumatic brain and spinal cord injuries Current opinion in neurology 2003 16 699 704 14624079
- Ceolotto G Papparella I Bortoluzzi A Strapazzon G Ragazzo F Bratti P Fabricio AS Squarcina E Gion M Palatini P Semplicini A Interplay between miR-155, AT1R A1166C polymorphism, and AT1R expression in young untreated hypertensives American journal of hypertension 2011 24 241 246 20966899
- Chen J Yang T Yu H Sun K Shi Y Song W Bai Y Wang X Lou K Song Y Zhang Y Hui R A functional variant in the 3'-UTR of angiopoietin-1 might reduce stroke risk by interfering with the binding efficiency of microRNA 211 Human molecular genetics 2010a 19 2524 2533 20378606
- Chen Y Zhu X Zhang X Liu B Huang L Nanoparticles modified with tumor-targeting scFv deliver siRNA and miRNA for cancer therapy Molecular therapy: the journal of the American Society of Gene Therapy 2010b 18 1650 1656 20606648 PMC2956922
- Cipollone F Felicioni L Sarzani R Ucchino S Spigonardo F Mandolini C Malatesta S Bucci M Mammarella C Santovito D de Lutiis F Marchetti A Mezzetti A Buttitta F A unique microRNA signature associated with plaque instability in humans Stroke; a journal of cerebral circulation 2011 42 2556 2563 21817153
- Collino M Aragno M Mastrocola R Benetti E Gallicchio M Dianzani C Danni O Thiemermann C Fantozzi R Oxidative stress and inflammatory response evoked by transient cerebral ischemia/reperfusion: effects of the PPAR-alpha agonist WY14643 Free radical biology & medicine 2006 41 579 589 16863991
- Cordaux R Batzer MA The impact of retrotransposons on human genome evolution Nature reviews. Genetics 2009 10 691 703 PMC2884099 19763152
- de Oliveira-Sales EB Nishi EE Boim MA Dolnikoff MS Bergamaschi CT Campos RR Upregulation of AT1R and iNOS in the rostral ventrolateral medulla (RVLM) is essential for the sympathetic hyperactivity and hypertension in the 2K-1C Wistar rat model American journal of hypertension 2010 23 708 715 20360752
- Della-Morte D Guadagni F Palmirotta R Ferroni P Testa G Cacciatore F Abete P Rengo F Perez-Pinzon MA Sacco RL Rundek T Genetics and genomics of ischemic tolerance: focus on cardiac and cerebral ischemic preconditioning Pharmacogenomics 2012 13 1741 1757 23171338
- Dempsey RJ Vemuganti R Varghese T Hermann BP A review of carotid atherosclerosis and vascular cognitive decline: a new understanding of the keys to symptomology Neurosurgery 2010 67 484 493 discussion 493-484 20644437 PMC2908960
- Dharap A Bowen K Place R Li LC Vemuganti R Transient focal ischemia induces extensive temporal changes in rat cerebral microRNAome Journal of cerebral blood flow and metabolism: official journal of the International Society of Cerebral Blood Flow and Metabolism 2009 29 675 687 19142192 PMC2743462
- Dharap A Nakka VP Vemuganti R Altered expression of PIWI RNA in the rat brain after transient focal ischemia Stroke; a journal of cerebral circulation 2011 42 1105 1109 PMC3566794 21311060
- Dharap A Nakka VP Vemuganti R Effect of Focal Ischemia on Long Noncoding RNAs Stroke; a journal of cerebral circulation 2012 43 2800 2802 PMC3458128 22949471
- Dharap A Vemuganti R Ischemic pre-conditioning alters cerebral microRNAs that are upstream to neuroprotective signaling pathways Journal of neurochemistry 2010 113 1685 1691 20402966 PMC2919749
- Dhodda VK Sailor KA Bowen KK Vemuganti R Putative endogenous mediators of preconditioning-induced ischemic tolerance in rat brain identified by genomic and proteomic analysis Journal of neurochemistry 2004 89 73 89 15030391
- Dietrich WD Bramlett HM The evidence for hypothermia as a neuroprotectant in traumatic brain injury Neurotherapeutics: the journal of the American Society for Experimental NeuroTherapeutics 2010 7 43 50 20129496 PMC2819078
- Dirnagl U Iadecola C Moskowitz MA Pathobiology of ischaemic stroke: an integrated view Trends in neurosciences 1999 22 391 397 10441299
- Donners MM Wolfs IM Stoger LJ van der Vorst EP Pottgens CC Heymans S Schroen B Gijbels MJ de Winther MP Hematopoietic miR155 deficiency enhances atherosclerosis and decreases plaque stability in hyperlipidemic mice PLoS One 2012 7 e35877 22558252 PMC3338496
- Ebert MS Neilson JR Sharp PA MicroRNA sponges: competitive inhibitors of small RNAs in mammalian cells Nature methods 2007 4 721 726 17694064 PMC3857099
- Elmen J Lindow M Schutz S Lawrence M Petri A Obad S Lindholm M Hedtjarn M Hansen HF Berger U Gullans S Kearney P Sarnow P Straarup EM Kauppinen S LNA-mediated microRNA silencing in non-human primates Nature 2008a 452 896 899 18368051
- Elmen J Lindow M Silahtaroglu A Bak M Christensen M Lind-Thomsen A Hedtjarn M Hansen JB Hansen HF Straarup EM McCullagh K Kearney P Kauppinen S Antagonism of microRNA-122 in mice by systemically administered LNA-antimiR leads to up-regulation of a large set of predicted target mRNAs in the liver Nucleic acids research 2008b 36 1153 1162 18158304 PMC2275095
- Eltzschig HK Eckle T Ischemia and reperfusion--from mechanism to translation Nature medicine 2011 17 1391 1401 PMC3886192 22064429
- Ergul A Alhusban A Fagan SC Angiogenesis: a harmonized target for recovery after stroke Stroke; a journal of cerebral circulation 2012 43 2270 2274 PMC3404267 22618382
- Fasanaro P Greco S Lorenzi M Pescatori M Brioschi M Kulshreshtha R Banfi C Stubbs A Calin GA Ivan M Capogrossi MC Martelli F An integrated approach for experimental target identification of hypoxia-induced miR-210 The Journal of biological chemistry 2009 284 35134 35143 19826008 PMC2787374
- Fire A Xu S Montgomery MK Kostas SA Driver SE Mello CC Potent and specific genetic interference by double-stranded RNA in Caenorhabditis elegans Nature 1998 391 806 811 9486653
- Galle AA Jones NM The neuroprotective actions of hypoxic preconditioning and postconditioning in a neonatal rat model of hypoxic-ischemic brain injury Brain research 2012 23274537
- Gan CS Wang CW Tan KS Circulatory microRNA-145 expression is increased in cerebral ischemia Genetics and molecular research: GMR 2012 11 147 152 22370881
- Giffard RG Yenari MA Many mechanisms for hsp70 protection from cerebral ischemia Journal of neurosurgical anesthesiology 2004 16 53 61 14676570
- Gogvadze E Buzdin A Retroelements and their impact on genome evolution and functioning Cell Mol Life Sci 2009 66 3727 3742 19649766 PMC11115525
- Gonzales NR Ongoing clinical trials in intracerebral hemorrhage Stroke; a journal of cerebral circulation 2013 44 S70 S73 23709737
- Guil S Esteller M Cis-acting noncoding RNAs: friends and foes Nature structural & molecular biology 2012 19 1068 1075 23132386
- Guo D Liu JN Wang WH Hao F Sun XD Wu X Bu PL Zhang Y Liu Y Liu FQ Zhang QY Jiang F Alteration in Abundance and Compartmentalization of Inflammation-Related miRNAs in Plasma After Intracerebral Hemorrhage Stroke 2013 44 1739 1742 23559260
- Gupta RA Shah N Wang KC Kim J Horlings HM Wong DJ Tsai MC Hung T Argani P Rinn JL Wang Y Brzoska P Kong B Li R West RB van de Vijver MJ Sukumar S Chang HY Long non-coding RNA HOTAIR reprograms chromatin state to promote cancer metastasis Nature 2010 464 1071 1076 20393566 PMC3049919
- Halic M Moazed D Transposon silencing by piRNAs Cell 2009 138 1058 1060 19766558 PMC3244755
- Harraz MM Eacker SM Wang X Dawson TM Dawson VL MicroRNA-223 is neuroprotective by targeting glutamate receptors Proceedings of the National Academy of Sciences of the United States of America 2012 109 18962 18967 23112146 PMC3503176
- Harries LW Long non-coding RNAs and human disease Biochemical Society transactions 2012 40 902 906 22817756
- Harris TA Yamakuchi M Ferlito M Mendell JT Lowenstein CJ MicroRNA-126 regulates endothelial expression of vascular cell adhesion molecule 1 Proceedings of the National Academy of Sciences of the United States of America 2008 105 1516 1521 18227515 PMC2234176
- Haussecker D Kay MA miR-122 continues to blaze the trail for microRNA therapeutics Molecular therapy: the journal of the American Society of Gene Therapy 2010 18 240 242 20125164 PMC2839286
- Hu Z Yu D Almeida-Suhett C Tu K Marini AM Eiden L Braga MF Zhu J Li Z Expression of miRNAs and their cooperative regulation of the pathophysiology in traumatic brain injury PLoS One 2012 7 e39357 22761770 PMC3382215
- Hung T Wang Y Lin MF Koegel AK Kotake Y Grant GD Horlings HM Shah N Umbricht C Wang P Kong B Langerod A Borresen-Dale AL Kim SK van de Vijver M Sukumar S Whitfield ML Kellis M Xiong Y Wong DJ Chang HY Extensive and coordinated transcription of noncoding RNAs within cell-cycle promoters Nature genetics 2011 43 621 629 21642992 PMC3652667
- Iadecola C Salkowski CA Zhang F Aber T Nagayama M Vogel SN Ross ME The transcription factor interferon regulatory factor 1 is expressed after cerebral ischemia and contributes to ischemic brain injury J Exp Med 1999 189 719 727 9989987 PMC2192924
- Ishizu H Siomi H Siomi MC Biology of PIWI-interacting RNAs: new insights into biogenesis and function inside and outside of germlines Genes & development 2012 26 2361 2373 23124062 PMC3489994
- Izumi B Nakasa T Tanaka N Nakanishi K Kamei N Yamamoto R Nakamae T Ohta R Fujioka Y Yamasaki K Ochi M MicroRNA-223 expression in neutrophils in the early phase of secondary damage after spinal cord injury Neuroscience letters 2011 492 114 118 21295111
- Jackson RJ Standart N How do microRNAs regulate gene expression? Science's STKE: signal transduction knowledge environment 2007 2007 re1 17200520
- Jeansson M Gawlik A Anderson G Li C Kerjaschki D Henkelman M Quaggin SE Angiopoietin-1 is essential in mouse vasculature during development and in response to injury The Journal of clinical investigation 2011 121 2278 2289 21606590 PMC3104773
- Jee MK Jung JS Choi JI Jang JA Kang KS Im YB Kang SK MicroRNA 486 is a potentially novel target for the treatment of spinal cord injury Brain: a journal of neurology 2012a 135 1237 1252 22466292
- Jee MK Jung JS Im YB Jung SJ Kang SK Silencing of miR20a is crucial for Ngn1-mediated neuroprotection in injured spinal cord Human gene therapy 2012b 23 508 520 22182208
- Jeyaseelan K Lim KY Armugam A MicroRNA expression in the blood and brain of rats subjected to transient focal ischemia by middle cerebral artery occlusion Stroke 2008 39 959 966 18258830
- Jickling GC Ander BP Stamova B Zhan X Liu D Bsc LR Verro P Khoury J Jauch EC Pancioli A Broderick JP Sharp FR RNA in blood is altered prior to hemorrhagic transformation in ischemic stroke Annals of neurology 2013 PMC3752310 23468366
- Jickling GC Stamova B Ander BP Zhan X Liu D Sison SM Verro P Sharp FR Prediction of cardioembolic, arterial, and lacunar causes of cryptogenic stroke by gene expression and infarct location Stroke; a journal of cerebral circulation 2012a 43 2036 2041 PMC3422649 22627989
- Jickling GC Stamova B Ander BP Zhan X Tian Y Liu D Xu H Johnston SC Verro P Sharp FR Profiles of lacunar and nonlacunar stroke Annals of neurology 2011 70 477 485 21796664 PMC3201749
- Jickling GC Xu H Stamova B Ander BP Zhan X Tian Y Liu D Turner RJ Mesias M Verro P Khoury J Jauch EC Pancioli A Broderick JP Sharp FR Signatures of cardioembolic and large-vessel ischemic stroke Annals of neurology 2010 68 681 692 21031583 PMC2967466
- Jickling GC Zhan X Stamova B Ander BP Tian Y Liu D Sison SM Verro P Johnston SC Sharp FR Ischemic transient neurological events identified by immune response to cerebral ischemia Stroke; a journal of cerebral circulation 2012b 43 1006 1012 PMC3327404 22308247
- Kapadia R Tureyen K Bowen KK Kalluri H Johnson PF Vemuganti R Decreased brain damage and curtailed inflammation in transcription factor CCAAT/enhancer binding protein beta knockout mice following transient focal cerebral ischemia Journal of neurochemistry 2006 98 1718 1731 16899075
- Kapadia R Yi JH Vemuganti R Mechanisms of anti-inflammatory and neuroprotective actions of PPAR-gamma agonists Frontiers in bioscience: a journal and virtual library 2008 13 1813 1826 17981670 PMC2734868
- Ketting RF microRNA Biogenesis and Function: An overview Advances in experimental medicine and biology 2011 700 1 14 21755468
- King MD Laird MD Ramesh SS Youssef P Shakir B Vender JR Alleyne CH Dhandapani KM Elucidating novel mechanisms of brain injury following subarachnoid hemorrhage: an emerging role for neuroproteomics Neurosurgical focus 2010 28 E10 20043714 PMC3151677
- Krutzfeldt J Rajewsky N Braich R Rajeev KG Tuschl T Manoharan M Stoffel M Silencing of microRNAs in vivo with 'antagomirs' Nature 2005 438 685 689 16258535
- Lee JT Epigenetic regulation by long noncoding RNAs Science 2012 338 1435 1439 23239728
- Lee ST Chu K Jung KH Yoon HJ Jeon D Kang KM Park KH Bae EK Kim M Lee SK Roh JK MicroRNAs induced during ischemic preconditioning Stroke; a journal of cerebral circulation 2010 41 1646 1651 20576953
- Lee YJ Johnson KR Hallenbeck JM Global protein conjugation by ubiquitin-like-modifiers during ischemic stress is regulated by microRNAs and confers robust tolerance to ischemia PLoS One 2012 7 e47787 23094087 PMC3475703
- Lei P Li Y Chen X Yang S Zhang J Microarray based analysis of microRNA expression in rat cerebral cortex after traumatic brain injury Brain research 2009 1284 191 201 19501075
- Lewis BP Burge CB Bartel DP Conserved seed pairing, often flanked by adenosines, indicates that thousands of human genes are microRNA targets Cell 2005 120 15 20 15652477
- Lewis BP Shih IH Jones-Rhoades MW Bartel DP Burge CB Prediction of mammalian microRNA targets Cell 2003 115 787 798 14697198
- Lewis DK Thomas KT Selvamani A Sohrabji F Age-related severity of focal ischemia in female rats is associated with impaired astrocyte function Neurobiology of aging 2012 33 1123 e1121-1116 22154819 PMC5636220
- Lipton P Ischemic cell death in brain neurons Physiological reviews 1999 79 1431 1568 10508238
- Liu C Peng Z Zhang N Yu L Han S Li D Li J Identification of differentially expressed microRNAs and their PKC-isoform specific gene network prediction during hypoxic preconditioning and focal cerebral ischemia of mice Journal of neurochemistry 2012a 120 830 841 22171942
- Liu CL Li X Hu GL Li RJ He YY Zhong W Li S He KL Wang LL Salubrinal protects against tunicamycin and hypoxia induced cardiomyocyte apoptosis via the PERK-eIF2alpha signaling pathway Journal of geriatric cardiology: JGC 2012b 9 258 268 23097656 PMC3470025
- Liu DZ Tian Y Ander BP Xu H Stamova BS Zhan X Turner RJ Jickling G Sharp FR Brain and blood microRNA expression profiling of ischemic stroke, intracerebral hemorrhage, and kainate seizures Journal of cerebral blood flow and metabolism: official journal of the International Society of Cerebral Blood Flow and Metabolism 2010a 30 92 101 19724284 PMC2949089
- Liu F McCullough LD Interactions between age, sex, and hormones in experimental ischemic stroke Neurochemistry international 2012 61 1255 1265 23068990 PMC3516397
- Liu G Detloff MR Miller KN Santi L Houle JD Exercise modulates microRNAs that affect the PTEN/mTOR pathway in rats after spinal cord injury Experimental neurology 2012c 233 447 456 22123082 PMC3268901
- Liu G Keeler BE Zhukareva V Houle JD Cycling exercise affects the expression of apoptosis-associated microRNAs after spinal cord injury in rats Experimental neurology 2010b 226 200 206 20816819 PMC2963016
- Liu NK Wang XF Lu QB Xu XM Altered microRNA expression following traumatic spinal cord injury Experimental neurology 2009a 219 424 429 19576215 PMC2810508
- Liu XS Chopp M Wang XL Zhang L Hozeska-Solgot A Tang T Kassis H Zhang RL Chen C Xu J Zhang ZG MicroRNA-17/92 cluster mediates the proliferation and survival of neural progenitor cells after stroke The Journal of biological chemistry 2013 PMC3642296 23511639
- Liu XS Chopp M Zhang RL Tao T Wang XL Kassis H Hozeska-Solgot A Zhang L Chen C Zhang ZG MicroRNA profiling in subventricular zone after stroke: MiR-124a regulates proliferation of neural progenitor cells through Notch signaling pathway PLoS One 2011 6 e23461 21887253 PMC3162555
- Liu YP Lang BT Baskaya MK Dempsey RJ Vemuganti R The potential of neural stem cells to repair stroke-induced brain damage Acta neuropathologica 2009b 117 469 480 19283395
- Lou YL Guo F Liu F Gao FL Zhang PQ Niu X Guo SC Yin JH Wang Y Deng ZF miR-210 activates notch signaling pathway in angiogenesis induced by cerebral ischemia Molecular and cellular biochemistry 2012 370 45 51 22833359
- Lusardi TA Farr CD Faulkner CL Pignataro G Yang T Lan J Simon RP Saugstad JA Ischemic preconditioning regulates expression of microRNAs and a predicted target, MeCP2, in mouse cortex Journal of cerebral blood flow and metabolism: official journal of the International Society of Cerebral Blood Flow and Metabolism 2010 30 744 756 20010955 PMC2935903
- Manley GT Fujimura M Ma T Noshita N Filiz F Bollen AW Chan P Verkman AS Aquaporin-4 deletion in mice reduces brain edema after acute water intoxication and ischemic stroke Nature medicine 2000 6 159 163 10655103
- Manwani B McCullough LD Estrogen in ischaemic stroke: the debate continues European journal of neurology: the official journal of the European Federation of Neurological Societies 2012 19 1276 1277 22564142 PMC3416912
- Martin MM Buckenberger JA Jiang J Malana GE Nuovo GJ Chotani M Feldman DS Schmittgen TD Elton TS The human angiotensin II type 1 receptor +1166 A/C polymorphism attenuates microrna-155 binding The Journal of biological chemistry 2007 282 24262 24269 17588946 PMC2413065
- Meller R Simon RP Tolerance to Ischemia - an increasingly complex biology Translational stroke research 2013 4 40 50 23504451 PMC3596882
- Mettimano M Romano-Spica V Ianni A Specchia M Migneco A Savi L AGT and AT1R gene polymorphism in hypertensive heart disease International journal of clinical practice 2002 56 574 577 12425365
- Nakanishi K Nakasa T Tanaka N Ishikawa M Yamada K Yamasaki K Kamei N Izumi B Adachi N Miyaki S Asahara H Ochi M Responses of microRNAs 124a and 223 following spinal cord injury in mice Spinal cord 2010 48 192 196 19621023
- Nan X Ng HH Johnson CA Laherty CD Turner BM Eisenman RN Bird A Transcriptional repression by the methyl-CpG-binding protein MeCP2 involves a histone deacetylase complex Nature 1998 393 386 389 9620804
- Nazari-Jahantigh M Wei Y Noels H Akhtar S Zhou Z Koenen RR Heyll K Gremse F Kiessling F Grommes J Weber C Schober A MicroRNA-155 promotes atherosclerosis by repressing Bcl6 in macrophages The Journal of clinical investigation 2012 122 4190 4202 23041630 PMC3484435
- Noguchi S Mori T Hoshino Y Yamada N Nakagawa T Sasaki N Akao Y Maruo K Comparative study of anti-oncogenic microRNA-145 in canine and human malignant melanoma The Journal of veterinary medical science / the Japanese Society of Veterinary Science 2012 74 1 8 21836381
- Nordell VL Scarborough MM Buchanan AK Sohrabji F Differential effects of estrogen in the injured forebrain of young adult and reproductive senescent animals Neurobiology of aging 2003 24 733 743 12885581
- O'Donnell KA Boeke JD Mighty Piwis defend the germline against genome intruders Cell 2007 129 37 44 17418784 PMC4122227
- Olson ST Heparin and ionic strength-dependent conversion of antithrombin III from an inhibitor to a substrate of alpha-thrombin The Journal of biological chemistry 1985 260 10153 10160 4019506
- Onteniente B Rasika S Benchoua A Guegan C Molecular pathways in cerebral ischemia: cues to novel therapeutic strategies Molecular neurobiology 2003 27 33 72 12668901
- Orom UA Nielsen FC Lund AH MicroRNA-10a binds the 5'UTR of ribosomal protein mRNAs and enhances their translation Molecular cell 2008 30 460 471 18498749
- Ouyang YB Lu Y Yue S Xu LJ Xiong XX White RE Sun X Giffard RG miR-181 regulates GRP78 and influences outcome from cerebral ischemia in vitro and in vivo Neurobiology of disease 2012 45 555 563 21983159 PMC3251314
- Pandi G Nakka VP Dharap A Roopra A Vemuganti R MicroRNA miR-29c Down-Regulation Leading to De-Repression of Its Target DNA Methyltransferase 3a Promotes Ischemic Brain Damage PLoS One 2013 8 e58039 23516428 PMC3596316
- Pasmant E Laurendeau I Heron D Vidaud M Vidaud D Bieche I Characterization of a germ-line deletion, including the entire INK4/ARF locus, in a melanoma-neural system tumor family: identification of ANRIL, an antisense noncoding RNA whose expression coclusters with ARF Cancer research 2007 67 3963 3969 17440112
- Pignataro G Meller R Inoue K Ordonez AN Ashley MD Xiong Z Gala R Simon RP In vivo and in vitro characterization of a novel neuroprotective strategy for stroke: ischemic postconditioning Journal of cerebral blood flow and metabolism: official journal of the International Society of Cerebral Blood Flow and Metabolism 2008 28 232 241 17882162
- Pillai RS Bhattacharyya SN Filipowicz W Repression of protein synthesis by miRNAs: how many mechanisms? Trends in cell biology 2007 17 118 126 17197185
- Place RF Li LC Pookot D Noonan EJ Dahiya R MicroRNA-373 induces expression of genes with complementary promoter sequences Proceedings of the National Academy of Sciences of the United States of America 2008 105 1608 1613 18227514 PMC2234192
- Qureshi IA Mehler MF Emerging roles of non-coding RNAs in brain evolution, development, plasticity and disease Nature reviews. Neuroscience 2012 13 528 541 PMC3478095 22814587
- Rah H Jeon YJ Shim SH Cha SH Choi DH Kwon H Kim JH Shin JE Kim NK Association of miR-146aC>G, miR-196a2T>C, and miR-499A>G polymorphisms with risk of premature ovarian failure in Korean women Reproductive sciences 2013 20 60 68 22872486
- Rahbek UL Nielsen AF Dong M You Y Chauchereau A Oupicky D Besenbacher F Kjems J Howard KA Bioresponsive hyperbranched polymers for siRNA and miRNA delivery Journal of drug targeting 2010 18 812 820 20979442
- Raitoharju E Lyytikainen LP Levula M Oksala N Mennander A Tarkka M Klopp N Illig T Kahonen M Karhunen PJ Laaksonen R Lehtimaki T miR-21, miR-210, miR-34a, and miR-146a/b are up-regulated in human atherosclerotic plaques in the Tampere Vascular Study Atherosclerosis 2011 219 211 217 21820659
- Read SJ Parsons AA Harrison DC Philpott K Kabnick K S OB Clark S Brawner M Bates S Gloger I Legos JJ Barone FC Stroke genomics: approaches to identify, validate, and understand ischemic stroke gene expression Journal of cerebral blood flow and metabolism: official journal of the International Society of Cerebral Blood Flow and Metabolism 2001 21 755 778 11435788
- Redell JB Liu Y Dash PK Traumatic brain injury alters expression of hippocampal microRNAs: potential regulators of multiple pathophysiological processes Journal of neuroscience research 2009 87 1435 1448 19021292 PMC5980641
- Redell JB Moore AN Ward NH 3rd Hergenroeder GW Dash PK Human traumatic brain injury alters plasma microRNA levels Journal of neurotrauma 2010 27 2147 2156 20883153 PMC6468948
- Salta E De Strooper B Non-coding RNAs with essential roles in neurodegenerative disorders Lancet neurology 2012 11 189 200 22265214
- Santovito D Mandolini C Marcantonio P De Nardis V Bucci M Paganelli C Magnacca F Ucchino S Mastroiacovo D Desideri G Mezzetti A Cipollone F Overexpression of 37 microRNA-145 in atherosclerotic plaques from hypertensive patients Expert opinion on therapeutic targets 2013 17 217 223 23339529
- Satriotomo I Bowen KK Vemuganti R JAK2 and STAT3 activation contributes to neuronal damage following transient focal cerebral ischemia J Neurochem 2006 98 1353 1368 16923154
- Saugstad JA MicroRNAs as effectors of brain function with roles in ischemia and injury, neuroprotection, and neurodegeneration Journal of cerebral blood flow and metabolism: official journal of the International Society of Cerebral Blood Flow and Metabolism 2010 30 1564 1576 20606686 PMC2932764
- Scholer N Langer C Dohner H Buske C Kuchenbauer F Serum microRNAs as a novel class of biomarkers: a comprehensive review of the literature Experimental hematology 2010 38 1126 1130 20977925
- Schonrock N Gotz J Decoding the non-coding RNAs in Alzheimer's disease Cellular and molecular life sciences: CMLS 2012 69 3543 3559 22955374 PMC11114718
- Sepramaniam S Armugam A Lim KY Karolina DS Swaminathan P Tan JR Jeyaseelan K MicroRNA 320a functions as a novel endogenous modulator of aquaporins 1 and 4 as well as a potential therapeutic target in cerebral ischemia The Journal of biological chemistry 2010 285 29223 29230 20628061 PMC2937953
- Sharp FR Jickling GC Stamova B Tian Y Zhan X Ander BP Cox C Kuczynski B Liu D RNA expression profiles from blood for the diagnosis of stroke and its causes Journal of child neurology 2011a 26 1131 1136 21636778 PMC3674558
- Sharp FR Jickling GC Stamova B Tian Y Zhan X Liu D Kuczynski B Cox CD Ander BP Molecular markers and mechanisms of stroke: RNA studies of blood in animals and humans Journal of cerebral blood flow and metabolism: official journal of the International Society of Cerebral Blood Flow and Metabolism 2011b 31 1513 1531 21505474 PMC3137473
- Shi H Sun BL Zhang J Lu S Zhang P Wang H Yu Q Stetler RA Vosler PS Chen J Gao Y miR-15b Suppression of Bcl-2 Contributes to Cerebral Ischemic Injury and is Reversed by Sevoflurane Preconditioning CNS & neurological disorders drug targets 2013 12 381 391 23469855 PMC4071288
- Shih AY Li P Murphy TH A small-molecule-inducible Nrf2-mediated antioxidant response provides effective prophylaxis against cerebral ischemia in vivo The Journal of neuroscience: the official journal of the Society for Neuroscience 2005 25 10321 10335 16267240 PMC6725780
- Si ML Zhu S Wu H Lu Z Wu F Mo YY miR-21-mediated tumor growth Oncogene 2007 26 2799 2803 17072344
- Siegel C Li J Liu F Benashski SE McCullough LD miR-23a regulation of X-linked inhibitor of apoptosis (XIAP) contributes to sex differences in the response to cerebral ischemia Proceedings of the National Academy of Sciences of the United States of America 2011 108 11662 11667 21709246 PMC3136267
- Song DY Oh KM Yu HN Park CR Woo RS Jung SS Baik TK Role of activating transcription factor 3 in ischemic penumbra region following transient middle cerebral artery occlusion and reperfusion injury Neuroscience research 2011 70 428 434 21616101
- Stamova B Xu H Jickling G Bushnell C Tian Y Ander BP Zhan X Liu D Turner R Adamczyk P Khoury JC Pancioli A Jauch E Broderick JP Sharp FR Gene expression profiling of blood for the prediction of ischemic stroke Stroke; a journal of cerebral circulation 2010 41 2171 2177 PMC2987675 20798371
- Stenzel-Poore MP Stevens SL Xiong Z Lessov NS Harrington CA Mori M Meller R Rosenzweig HL Tobar E Shaw TE Chu X Simon RP Effect of ischaemic preconditioning on genomic response to cerebral ischaemia: similarity to neuroprotective strategies in hibernation and hypoxia-tolerant states Lancet 2003 362 1028 1037 14522533
- Stetler RA Gao Y Signore AP Cao G Chen J HSP27: mechanisms of cellular protection against neuronal injury Current molecular medicine 2009 9 863 872 19860665 PMC2775412
- Strickland ER Hook MA Balaraman S Huie JR Grau JW Miranda RC MicroRNA dysregulation following spinal cord contusion: implications for neural plasticity and repair Neuroscience 2011 186 146 160 21513774 PMC3155824
- Tan KS Armugam A Sepramaniam S Lim KY Setyowati KD Wang CW Jeyaseelan K Expression profile of MicroRNAs in young stroke patients PLoS One 2009 4 e7689 19888324 PMC2765616
- Tanaka K Nogawa S Ito D Suzuki S Dembo T Kosakai A Fukuuchi Y Activated phosphorylation of cyclic AMP response element binding protein is associated with preservation of striatal neurons after focal cerebral ischemia in the rat Neuroscience 2000a 100 345 354 11008172
- Tanaka K Nogawa S Nagata E Ito D Suzuki S Dembo T Kosakai A Fukuuchi Y Persistent CREB phosphorylation with protection of hippocampal CA1 pyramidal neurons following temporary occlusion of the middle cerebral artery in the rat Experimental neurology 2000b 161 462 471 10686068
- Truettner JS Alonso OF Bramlett HM Dietrich WD Therapeutic hypothermia alters microRNA responses to traumatic brain injury in rats Journal of cerebral blood flow and metabolism: official journal of the International Society of Cerebral Blood Flow and Metabolism 2011 31 1897 1907 21505482 PMC3185878
- Tureyen K Brooks N Bowen K Svaren J Vemuganti R Transcription factor early growth response-1 induction mediates inflammatory gene expression and brain damage following transient focal ischemia Journal of neurochemistry 2008 105 1313 1324 18208539 PMC2603292
- Tureyen K Kapadia R Bowen KK Satriotomo I Liang J Feinstein DL Vemuganti R Peroxisome proliferator-activated receptor-gamma agonists induce neuroprotection following transient focal ischemia in normotensive, normoglycemic as well as hypertensive and type-2 diabetic rodents J Neurochem 2007 101 41 56 17394460
- Tureyen K Vemuganti R Salamat MS Dempsey RJ Increased angiogenesis and angiogenic gene expression in carotid artery plaques from symptomatic stroke patients Neurosurgery 2006 58 971 977 discussion 971-977 16639334
- Vasudevan S Tong Y Steitz JA Switching from repression to activation: microRNAs can up-regulate translation Science 2007 318 1931 1934 18048652
- Vemuganti R Bowen K Dhodda VK Song G Franklin JL Gavva NR Dempsey RJ Gene expression analysis of spontaneously hypertensive rat cerebral cortex following transient focal cerebral ischemia J Neurochem 2002 83 1072 1086 12437578
- Vemuganti R Dempsey RJ Carotid atherosclerotic plaques from symptomatic stroke patients share the molecular fingerprints to develop in a neoplastic fashion: a microarray analysis study Neuroscience 2005 131 359 374 15708479
- Vemuganti R Dempsey RJ Increased expression of genes that control ionic homeostasis, second messenger signaling and metabolism in the carotid plaques from patients with symptomatic stroke Journal of neurochemistry 2006 97 Suppl 1 92 96 16635256
- Venna VR Weston G Benashski SE Tarabishy S Liu F Li J Conti LH McCullough LD NF-kappaB contributes to the detrimental effects of social isolation after experimental stroke Acta neuropathologica 2012 124 425 438 22562356 PMC4065798
- Wang GK Zhu JQ Zhang JT Li Q Li Y He J Qin YW Jing Q Circulating microRNA: a novel potential biomarker for early diagnosis of acute myocardial infarction in humans European heart journal 2010 31 659 666 20159880
- Wang Y Guo F Pan C Lou Y Zhang P Guo S Yin J Deng Z Effects of low temperatures on proliferation-related signaling pathways in the hippocampus after traumatic brain injury Experimental biology and medicine 2012 237 1424 1432 23354401
- Weber JA Baxter DH Zhang S Huang DY Huang KH Lee MJ Galas DJ Wang K The microRNA spectrum in 12 body fluids Clinical chemistry 2010a 56 1733 1741 20847327 PMC4846276
- Weber M Baker MB Moore JP Searles CD MiR-21 is induced in endothelial cells by shear stress and modulates apoptosis and eNOS activity Biochemical and biophysical research communications 2010b 393 643 648 20153722 PMC3717387
- Weinstein PR Hong S Sharp FR Molecular identification of the ischemic penumbra Stroke; a journal of cerebral circulation 2004 35 2666 2670 15486332
- Weng H Shen C Hirokawa G Ji X Takahashi R Shimada K Kishimoto C Iwai N Plasma miR-124 as a biomarker for cerebral infarction Biomedical research 2011 32 135 141 21551949
- Wilson ME Stroke: understanding the differences between males and females Pflugers Archiv: European journal of physiology 2013 PMC3654052 23503729
- Wiltrout C Lang B Yan Y Dempsey RJ Vemuganti R Repairing brain after stroke: a review on post-ischemic neurogenesis Neurochemistry international 2007 50 1028 1041 17531349
- Wright MW Bruford EA Naming 'junk': human non-protein coding RNA (ncRNA) gene nomenclature Human genomics 2011 5 90 98 21296742 PMC3051107
- Xiong Y Mahmood A Chopp M Animal models of traumatic brain injury Nature reviews. Neuroscience 2013 14 128 142 PMC3951995 23329160
- Xu CC Han WQ Xiao B Li NN Zhu DL Gao PJ [Differential expression of microRNAs in the aorta of spontaneously hypertensive rats] Sheng li xue bao: [Acta physiologica Sinica] 2008 60 553 560 18690400
- Xu H Stamova B Jickling G Tian Y Zhan X Ander BP Liu D Turner R Rosand J Goldstein LB Furie KL Verro P Johnston SC Sharp FR Decarli CS Distinctive RNA expression profiles in blood associated with white matter hyperintensities in brain Stroke; a journal of cerebral circulation 2010 41 2744 2749 PMC3694808 20966416
- Xu W Wang X Li P Qin K Jiang X miR-124 regulates neural stem cells in the treatment of spinal cord injury Neuroscience letters 2012a 529 12 17 22999930
- Xu WH Yao XY Yu HJ Huang JW Cui LY Downregulation of miR-199a may play a role in 3-nitropropionic acid induced ischemic tolerance in rat brain Brain research 2012b 1429 116 123 22079324
- Yan W Fang Z Yang Q Dong H Lu Y Lei C Xiong L SirT1 mediates hyperbaric oxygen preconditioning-induced ischemic tolerance in rat brain Journal of cerebral blood flow and metabolism: official journal of the International Society of Cerebral Blood Flow and Metabolism 2013 33 396 406 23299244 PMC3587810
- Yi JH Park SW Brooks N Lang BT Vemuganti R PPARgamma agonist rosiglitazone is neuroprotective after traumatic brain injury via anti-inflammatory and anti-oxidative mechanisms Brain research 2008 1244 164 172 18948087 PMC2603294
- Yi JH Park SW Kapadia R Vemuganti R Role of transcription factors in mediating post-ischemic cerebral inflammation and brain damage Neurochem Int 2007 50 1014 1027 17532542 PMC2040388
- Yin KJ Deng Z Hamblin M Xiang Y Huang H Zhang J Jiang X Wang Y Chen YE Peroxisome proliferator-activated receptor delta regulation of miR-15a in ischemia-induced cerebral vascular endothelial injury J Neurosci 2010a 30 6398 6408 20445066 PMC2874744
- Yin KJ Deng Z Huang H Hamblin M Xie C Zhang J Chen YE miR-497 regulates neuronal death in mouse brain after transient focal cerebral ischemia Neurobiol Dis 2010b 38 17 26 20053374 PMC2837803
- Yu W Gius D Onyango P Muldoon-Jacobs K Karp J Feinberg AP Cui H Epigenetic silencing of tumour suppressor gene p15 by its antisense RNA Nature 2008 451 202 206 18185590 PMC2743558
- Yu YM Gibbs KM Davila J Campbell N Sung S Todorova TI Otsuka S Sabaawy HE Hart RP Schachner M MicroRNA miR-133b is essential for functional recovery after spinal cord injury in adult zebrafish The European journal of neuroscience 2011 33 1587 1597 21447094 PMC3100659
- Yunta M Nieto-Diaz M Esteban FJ Caballero-Lopez M Navarro-Ruiz R Reigada D Pita-Thomas DW del Aguila A Munoz-Galdeano T Maza RM MicroRNA dysregulation in the spinal cord following traumatic injury PLoS One 2012 7 e34534 22511948 PMC3325277
- Zampetaki A Kiechl S Drozdov I Willeit P Mayr U Prokopi M Mayr A Weger S Oberhollenzer F Bonora E Shah A Willeit J Mayr M Plasma microRNA profiling reveals loss of endothelial miR-126 and other microRNAs in type 2 diabetes Circulation research 2010 107 810 817 20651284
- Zeng L Liu J Wang Y Wang L Weng S Tang Y Zheng C Cheng Q Chen S Yang GY MicroRNA-210 as a novel blood biomarker in acute cerebral ischemia Frontiers in bioscience 2011 3 1265 1272 21622133
- Zhan X Ander BP Liao IH Hansen JE Kim C Clements D Weisbart RH Nishimura RN Sharp FR Recombinant Fv-Hsp70 protein mediates neuroprotection after focal cerebral ischemia in rats Stroke; a journal of cerebral circulation 2010 41 538 543 PMC2957177 20075343
- Zhang L Chopp M Liu X Teng H Tang T Kassis H Zhang ZG Combination therapy with VELCADE and tissue plasminogen activator is neuroprotective in aged rats after stroke and targets microRNA-146a and the toll-like receptor signaling pathway Arteriosclerosis, thrombosis, and vascular biology 2012a 32 1856 1864 PMC3412625 22723435
- Zhang L Dong LY Li YJ Hong Z Wei WS The microRNA miR-181c controls microglia-mediated neuronal apoptosis by suppressing tumor necrosis factor Journal of neuroinflammation 2012b 9 211 22950459 PMC3488569
- Zhang L Dong LY Li YJ Hong Z Wei WS miR-21 represses FasL in microglia and protects against microglia-mediated neuronal cell death following hypoxia/ischemia Glia 2012c 60 1888 1895 22907769
- Zheng HW Wang YL Lin JX Li N Zhao XQ Liu GF Liu LP Jiao Y Gu WK Wang DZ Wang YJ Circulating MicroRNAs as Potential Risk Biomarkers for Hematoma Enlargement after Intracerebral Hemorrhage Cns Neuroscience & Therapeutics 2012 18 1003 1011 23190933 PMC6493543
- Authors
- Vemuganti, R.
- Affiliations
- University of Wisconsin–Madison (US)
- Corresponding author
- Vemuganti, Raghu
- ORCID
- Vemuganti, Raghu
- Venue
- Neurochemistry International
- Publisher
- Elsevier BV
- Published
- 2013-11
- Volume
- 63
- Issue
- 5
- Pages
- 438-449
- ISSN
- 0197-0186 (ISSN-L)
- PMC
- PMC3805745
- OpenAlex
- W1982373471
- Cited by
- 71
- References
- 190
- Citations by year
- 2025: 3 · 2024: 3 · 2023: 4 · 2022: 2 · 2021: 7 · 2020: 9 · 2019: 11 · 2018: 4 · 2017: 12 · 2016: 6 · 2015: 5 · 2014: 5
- FWCI
- 0.44
- Type
- journal article
- Language
- en
- Open access
- green
- www.ncbi.nlm.nih.gov
- Locations
- Neurochemistry International (publishedVersion)
- PubMed (publishedVersion)
- PubMed Central (acceptedVersion)
- Funders
- National Institutes of Health
- National Institute of Neurological Disorders and Stroke (NS074444, R21NS079585, NS079585, R21NS061071, R01NS064034, R21NS074444)
- Topics
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Cancer Research › MicroRNA in disease regulation
- Life Sciences › Neuroscience › Neurology › Neuroinflammation and Neurodegeneration Mechanisms
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Cancer Research › Cancer-related molecular mechanisms research
- Keywords
- non-coding RNA, microRNA, long non-coding RNA, piRNA, stroke, cerebral ischemia, blood-based biomarkers, neuronal cell death, neuroplasticity, stroke therapy targets
- MeSH terms
- Animals, Humans, Transcription, Genetic, Stroke, RNA, Untranslated
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