Cited by 186Advanced Neuroimaging Techniques and ApplicationsFunctional Brain Connectivity StudiesAdvanced MRI Techniques and Applications

Tract-based morphometry for white matter group analysis

Open access
O'Donnell, Lauren J., Westin, Carl-Fredrik, Golby, Alexandra J.·2009·NeuroImage

Abstract

We introduce an automatic method that we call tract-based morphometry, or TBM, for measurement and analysis of diffusion MRI data along white matter fiber tracts. Using subject-specific tractography bundle segmentations, we generate an arc length parameterization of the bundle with point correspondences across all fibers and all subjects, allowing tract-based measurement and analysis. In this paper we present a quantitative comparison of fiber coordinate systems from the literature and we introduce an improved optimal match method that reduces spatial distortion and improves intra- and inter-subject variability of FA measurements. We propose a method for generating arc length correspondences across hemispheres, enabling a TBM study of interhemispheric diffusion asymmetries in the arcuate fasciculus (AF) and cingulum bundle (CB). The results of this study demonstrate that TBM can detect differences that may not be found by measuring means of scalar invariants in entire tracts, such as the mean diffusivity (MD) differences found in AF. We report TBM results of higher fractional anisotropy (FA) in the left hemisphere in AF (caused primarily by lower lambda(3), the smallest eigenvalue of the diffusion tensor, in the left AF), and higher left hemisphere FA in CB (related to higher lambda(1), the largest eigenvalue of the diffusion tensor, in the left CB). By mapping the significance levels onto the tractography trajectories for each structure, we demonstrate the anatomical locations of the interhemispheric differences. The TBM approach brings analysis of DTI data into the clinically and neuroanatomically relevant framework of the tract anatomy.

The claims and statistics of this paper haven’t been checked yet.

Run the check — free, no account needed. It reads the open-access text and checks the sources it cites.

A few free checks a day · papers already verified open instantly · results are public

Integrity signals

Registry

Crossref · 10.1016/j.neuroimage.2008.12.023

Cites

Statistics

Claims the paper makes

The claims and statistics of this paper haven’t been checked yet.

Run the check — free, no account needed. It reads the open-access text and checks the sources it cites.

A few free checks a day · papers already verified open instantly · results are public

Claims other papers make about this one

Each is checked against this paper’s own text: does it say what the citing paper says it does?

  • Many methods perform along-tract analysis to investigate the distribution of microstructural measures along the fiber pathway.

    “Instead of using a single scalar value to summarize the entire pathway, many methods perform along-tract analysis to investigate the distribution of the microstructural measures along the fiber pathway (variously called “tractometry,” “profilometry,” and “tract-based morphometry”) (Bells et al., 2011b; O’Donnell et al., 2009; Yeatman et al., 2012).”

Self-check

Percentages, sums and reported differences re-computed from the paper’s own numbers.

The self-check needs the paper’s full text.

The citation lists haven’t been fetched yet

References 39 · Cited by 186

Research works printed but not linked: 30

  1. Ashburner J Friston K Voxel-based morphometry-the methods NeuroImage 2000 11 6 805 821 10860804
  2. Basser P Pajevic S Pierpaoli C Duda J Aldroubi A In vivo fiber tractography using DT-MRI data Magnetic Resonance in Medicine 2000 44 625 632 11025519
  3. Batchelor PG Calamante F Tournier J-D Atkinson D Hill DLG Connelly A Quantification of the shape of fiber tracts Magnetic Resonance in Medicine 2006 55 4 16526017
  4. Buchel C Raedler T Sommer M Sach M Weiller C Koch M White Matter Asymmetry in the Human Brain: A Diffusion Tensor MRI Study Cereb. Cortex 2004 14 9 945 951 15115737
  5. Corouge I Fletcher P Joshi S Gouttard S Gerig G Fiber tractoriented statistics for quantitative diffusion tensor MRI analysis Medical Image Analysis 2006 10 5 786 798 16926104
  6. Gong G Jiang T Zhu C Zang Y Wang F Xie S Xiao J Guo X Asymmetry analysis of cingulum based on scale-invariant parameterization by diffusion tensor imaging Human Brain Mapping 2005 24 2 92 98 15455461 PMC6871701
  7. Heiervang E Behrens T Mackay C Robson M Johansen-Berg H Between session reproducibility and between subject variability of diffusion MR and tractography measures NeuroImage 2006 33 3 867 877 17000119
  8. Johansen-Berg H Behrens T Just pretty pictures? What diffusion tractography can add in clinical neuroscience Curr Opin Neurol 2006 19 4 379 385 16914977 PMC3119814
  9. Jones DK Catani M Pierpaoli C Reeves SJ Shergill SS O’Sullivan M Golesworthy P McGuire P Horsfield MA Simmons A Williams SC Howard RJ Age effects on diffusion tensor magnetic resonance imaging tractography measures of frontal cortex connections in schizophrenia Human Brain Mapping 2006 27 230 238 16082656 PMC6871456
  10. Kubicki M Westin C-F Maier SE Mamata H Frumin M Ernst-Hirshefeld H Kikinis R Jolesz FA McCarley RW Shenton ME Cingulate Fasciculus Integrity Disruption in Schizophrenia: A Magnetic Resonance Diffusion Tensor Imaging Study Biological Pyschiatry 2003 54 1171 1180 PMC2806222 14643084
  11. Lin F Yu C Jiang T Li K Li X Qin W Sun H Chan P Quantitative analysis along the pyramidal tract by length-normalized parameterization based on diffusion tensor tractography: Application to patients with relapsing neuromyelitis optica NeuroImage 2006 33 1 154 160 16919971
  12. Maddah M Grimson W Warfield S Statistical modeling and EM clustering of white matter fiber tracts International Symposium on Biomedical Imaging (ISBI) 2006 53 56
  13. Maddah M Grimson WEL Warfield SK Wells WM A unified framework for clustering and quantitative analysis of white matter fiber tracts Medical Image Analysis 2008 12 2 191 202 18180197 PMC2615202
  14. Niethammer M Bouix S Westin C-F Shenton ME Fiber bundle estimation and parameterization Proc. Medical Image Conference and Computer Assisted Intervention (MICCAI) 2006 October 252 259 PMC2773691 17354779
  15. O’Donnell L Westin C-F Automatic Tractography Segmentation Using a High-Dimensional White Matter Atlas IEEE Trans. Medical Imaging 2007 26 11 1562 1575 18041271
  16. O’Donnell LJ Westin C-F Golby AJ Tract-Based Morphometry Proc. Medical Image Conference and Computer Assisted Intervention (MICCAI) 2007 161 168 18044565
  17. Pagani E Filippi M Rocca M Horsfield M A method for obtaining tract-specific diffusion tensor MRI measurements in the presence of disease: application to patients with clinically isolated syndromes suggestive of multiple sclerosis NeuroImage 2005 26 1 258 265 15862226
  18. Park HJ Westin C-F Kubicki M Maier SE Niznikiewicz M Baer A Frumin M Kikinis R Jolesz FA McCarley RW Shenton ME White matter hemisphere asymmetries in healthy subjects and in schizophrenia: A diffusion tensor MRI study NeuroImage 2004 24 213 223 15325368 PMC2794419
  19. Peled S Friman O Jolesz F Westin C-F Geometrically constrained two-tensor model for crossing tracts in DWI Magnetic Resonance Imaging 2006 24 1263 1270 17071347 PMC2000805
  20. Powell HR Parker GJ Alexander DC Symms MR Boulby PA Wheeler-Kingshott CA Barker GJ Noppeney U Koepp MJ Duncan JS Hemispheric asymmetries in language-related pathways: A combined functional MRI and tractography study NeuroImage 2006 32 1 388 399 16632380
  21. Qazi AA Radmanesh A O’Donnell L Kindlmann G Peled S Whalen S Westin C-F Golby AJ Resolving crossings in the corticospinal tract by two-tensor streamline tractography: Method and clinical assessment using fMRI NeuroImage 2008 In Press PMC2746909 18657622
  22. Reich D Smith S Jones C Zackowski K van Zijl P Calabresi P Mori S Quantitative Characterization of the Corticospinal Tract at 3T AJNR Am J Neuroradiol 2006 27 10 2168 2178 17110689 PMC2802715
  23. Smith SM Jenkinson M Johansen-Berg H Rueckert D Nichols TE Mackay CE Watkins KE Ciccarelli O Cader MZ Matthews PM Behrens T Tract-Based Spatial Statistics: Voxelwise Analysis of Multi-Subject Diffusion Data NeuroImage 2006 31 1487 1505 16624579
  24. Toga A Thompson P Mapping brain asymmetry Nat Rev Neurosci 2003 4 1 37 48 12511860
  25. Vernooij M Smits M Wielopolski P Houston G Krestin G van der Lugt A Fiber density asymmetry of the arcuate fasciculus in relation to functional hemispheric language lateralization in both right- and left-handed healthy subjects: A combined fMRI and DTI study NeuroImage 2007 35 3 1064 1076 17320414
  26. Wakana S Caprihan A Panzenboeck MM Fallon JH Perry M Gollub RL Hua K Zhang J Jiang H Dubey P Blitz A van Zijl P Mori S Reproducibility of quantitative tractography methods applied to cerebral white matter NeuroImage 2007 36 3 630 644 17481925 PMC2350213
  27. Wedeen V Wang R Schmahmann J Benner T Tseng W Dai G Pandya D Hagmann P D’Arceuil H de Crespigny A Diffusion spectrum magnetic resonance imaging (DSI) tractography of crossing fibers NeuroImage 2008 41 4 1267 1277 18495497
  28. Xue R van Zijl PC Crain BJ Solaiyappan M Mori S In vivo three-dimensional reconstruction of rat brain axonal projections by diffusion tensor imaging Magnetic Resonance in Medicine 1999 42 6 1123 1127 10571934
  29. Yushkevich PA Zhang H Simon TJ Gee JC Structure-specific statistical mapping of white matter tracts NeuroImage 2008 41 2 448 461 18407524 PMC2519052
  30. Zollei L Learned-Miller E Grimson WEL Wells MW III Efficient population registration of 3D data Computer Vision for Biomedical Image Applications 2005 ICCV 2005 291 301

Authors
O'Donnell, L. J., Westin, C.-F., & Golby, A. J.
Affiliations
Brigham and Women's Hospital (US)
Venue
NeuroImage
Publisher
Elsevier BV
Published
2009-04
Volume
45
Issue
3
Pages
832-844
ISSN
1053-8119 (ISSN-L)
OpenAlex
W2037050487
Cited by
186
References
39
Citations by year
2026: 1 · 2025: 5 · 2024: 6 · 2023: 2 · 2022: 11 · 2021: 5 · 2020: 10 · 2019: 12 · 2018: 13 · 2017: 14 · 2016: 14 · 2015: 14 · 2014: 12 · 2013: 13 · 2012: 14
FWCI
10.27
Type
journal article
Language
en
Open access
Locations
  • NeuroImage (publishedVersion)
  • PubMed (publishedVersion)
  • PubMed Central (acceptedVersion)
Funders
  • National Institute on Aging (R01AG020012, R01-AG20012)
  • National Institute of Mental Health (R01MH074794)
  • National Cancer Institute (R25CA089017)
  • National Institute of Neurological Disorders and Stroke (K08NS048063)
  • National Institute of Biomedical Imaging and Bioengineering (U54EB005149)
  • National Center for Research Resources (P41RR15241, P41RR015241, U41RR019703, P41RR013218, P41 RR13218)
Topics
  • Health Sciences › Medicine › Radiology, Nuclear Medicine and Imaging › Advanced Neuroimaging Techniques and Applications
  • Life Sciences › Neuroscience › Cognitive Neuroscience › Functional Brain Connectivity Studies
  • Health Sciences › Medicine › Radiology, Nuclear Medicine and Imaging › Advanced MRI Techniques and Applications
Keywords
white matter tracts, diffusion MRI, arc length parameterization, optimal matching, fractional anisotropy, hemispheric lateralization, arcuate fasciculus, cingulum, group analysis
MeSH terms
Brain, Brain Mapping, Humans, Image Processing, Computer-Assisted, Diffusion Magnetic Resonance Imaging

About these checks

Registry, retraction, Cites and statistics results are computed, not judged, with one exception: a printed reference that no index lists is read once by a model before it counts as a citation error. Claims are extracted by a model and kept only when their quote appears verbatim in the text; each cited source is then checked, with a model’s help, for whether it says what the claim relies on. Those verdicts can be wrong — read the claim’s quote and the cited source before relying on one.

Statistics and arithmetic are recomputed, not judged.

Confidence bands are shown only for fields calibrated on our annotated test set. None is calibrated yet, so no band is shown.

What counts as a claim ›How we measure confidence ›How we check this ›

Are you an author, or do you see a problem with this page? Request a review