A Standard Nomenclature for Referencing and Authentication of Pluripotent Stem Cells
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There is no universally accepted naming convention for all cell lines, but some fields, such as PSCs, have published standards to systematically create unique cell line identifiers.
“Although there is no universally accepted naming convention for all cell lines, some fields, such as PSCs, have published standards to systematically create unique cell line identifiers (Kurtz et al., 2018; Reid, 2017).”
From Guidance document on Good cell and tissue culture practice 2.0 (GCCP 2.0) (2021) · cites this paper as Kurtz et al., 2018
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Cites
The FAIR Guiding Principles for scientific data management and stewardship
Wilkinson, M. D., Dumontier, M., Aalbersberg, I. J., Appleton, G., Axton, M., Baak, A., Blomberg, N., Boiten, J.-W., da Silva Santos, L. B., Bourne, P. E., et al. (2016) · Scientific Data · doi:10.1038/sdata.2016.18 · Cited by 18,423 · see citing works
A resource for cell line authentication, annotation and quality control
Yu, M., Selvaraj, S. K., Liang-Chu, M. M. Y., Aghajani, S., Busse, M., Yuan, J., Lee, G., Peale, F., Klijn, C., Bourgon, R., et al. (2015) · Nature · doi:10.1038/nature14397 · Cited by 243 · cited 1× · see citing works
“Referencing across these different data sources is not yet possible but would provide a powerful instrument for cell line authentication (Yu et al., 2015; Barrett et al., 2012).”
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Research works printed but not linked: 14
- Barrett T. Clark K. Gevorgyan R. Gorelenkov V. Gribov E. Karsch-Mizrachi I. Kimelman M. Pruitt K.D. Resenchuk S. Tatusova T. BioProject and BioSample databases at NCBI: facilitating capture and organization of metadata Nucleic Acids Res. 40 DI 2012 D57 D63 22139929 PMC3245069
- De Sousa P.A. Steeg R. Wachter E. Bruce K. King J. Hoeve M. Khadun S. McConnachie G. Holder J. Kurtz A. Rapid establishment of the European bank for induced pluripotent stem cells (EBiSC)—the hot start experience Stem Cell Res. 20 2017 105 114 28334554
- Dirks W.G. Drexler H.G. Online verification of human cell line identity by STR DNA typing Methods Mol. Biol. 731 2011 45 55 21516397
- Dirks W.G. Drexler H.G. STR DNA typing of human cell lines: detection of intra- and interspecies cross-contamination Methods Mol. Biol. 946 2013 27 38 23179824
- Faulconbridge A. Burdett T. Brandizi M. Gostev M. Pereira R. Vasant D. Sarkans U. Brazma A. Parkinson H. Updates to BioSamples database at European Bioinformatics Institute Nucleic Acids Res. 42 DI 2014 D50 D52 24265224 PMC3965081
- French A. Bravery C. Smith J. Chandra A. Archibald P. Gold J.D. Artzi N. Kim H.W. Barker R.W. Meissner A. Enabling consistency in pluripotent stem cell- derived products for research and development and clinical applications through material standards Stem Cells Transl. Med. 4 2015 217 223 25650438 PMC4339854
- Isasi R. Andrews P.W. Baltz J.M. Bredenoord A.L. Burton P. Chiu I.M. Hull S.C. Jung J.W. Kurtz A. Lomax G. Identifiability and privacy in pluripotent stem cell research Cell Stem Cell 14 2014 427 430 24702994 PMC4815907
- Kim J.H. Kurtz A. Yuan B.Z. Zeng F. Lomax G. Loring J.F. Crook J. Ju J.H. Clarke L. Inamdar M.S. Report of the International Stem Cell Banking Initiative workshop activity: current hurdles and progress in seed-stock banking of human pluripotent stem cells Stem Cells Transl. Med. 6 2017 1956 1962 29067781 PMC6430055
- Kobold S. Guhr A. Löser P. Kurtz A. Human embryonic and induced pluripotent stem cell research trends: complementation and diversification of the field Stem Cell Reports 4 2015 914 925 25866160 PMC4437486
- Luong M.X. Auerbach J. Crook J.M. Daheron L. Hei D. Lomax G. Loring J.F. Ludwig T. Schlaeger T.M. Smith K.P. A call for standardized naming and reporting of human ESC and iPSC lines Cell Stem Cell 8 2011 357 359 21474098
- McKernan R. Watt F.M. What is the point of large-scale collections of human induced pluripotent stem cells? Nat. Biotechnol. 31 2013 875 877 24104747 PMC3825502
- Morrison M. Bell J. George C. Harmon S. Munsie M. Kaye J. The European General Data Protection Regulation: challenges and considerations for iPSC researchers and biobanks Regen. Med. 12 2017 693 703 28976812 PMC5857917
- Ruitberg C.M. Reeder D.J. Butler J.M. STRBase: a short tandem repeat DNA database for the human identity testing community Nucleic Acids Res. 29 2001 320 322 11125125 PMC29767
- Seltmann S. Lekschas F. Müller R. Stachelscheid H. Bittner M.S. Zhang W. Kidane L. Seriola A. Veiga A. Stacey G. hPSCreg—the human pluripotent stem cell registry Nucleic Acids Res. 44 DI 2016 D757 D763 26400179 PMC4702942
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The Cellosaurus, a Cell-Line Knowledge Resource
Bairoch, A. (2018) · Journal of Biomolecular Techniques JBT · doi:10.7171/jbt.18-2902-002 · Cited by 807 · see citing works
Self-citationvan der Meer, D., Barthorpe, S., Yang, W., Lightfoot, H., Hall, C., Gilbert, J., Francies, H. E., & Garnett, M. J. (2019) · Nucleic Acids Research · doi:10.1093/nar/gky872 · Cited by 195 · see citing works
ISSCR standards for the use of human stem cells in basic research
Ludwig, T. E., Andrews, P. W., Barbaric, I., Benvenisty, N., Bhattacharyya, A., Crook, J. M., Daheron, L. M., Draper, J. S., Healy, L. E., Huch, M., et al. (2023) · Stem Cell Reports · doi:10.1016/j.stemcr.2023.08.003 · Cited by 126 · see citing works
Self-citationGuidance document on Good cell and tissue culture practice 2.0 (GCCP 2.0)
Pamies, D. (2021) · ALTEX · doi:10.14573/altex.2111011 · Cited by 100 · see citing works
- Authors
- Kurtz, A., Seltmann, S., Bairoch, A., Bittner, M.-S., Bruce, K., Capes-Davis, A., Clarke, L., Crook, J. M., Daheron, L., Dewender, J., Faulconbridge, A., Fujibuchi, W., Gutteridge, A., Hei, D. J., Kim, Y.-O., Kim, J.-H., Kokocinski, A. K., Lekschas, F., Lomax, G. P., Loring, J. F., Ludwig, T., Mah, N., Matsui, T., Müller, R., Parkinson, H., Sheldon, M., Smith, K., Stachelscheid, H., Stacey, G., Streeter, I., Veiga, A., & Xu, R.-H.
- Venue
- Stem Cell Reports
- Publisher
- Elsevier BV
- Published
- 2018-01
- Volume
- 10
- Issue
- 1
- Pages
- 1-6
- ISSN
- 2213-6711
- PMC
- PMC5768986
- Cited by
- 46
- References
- 2
- Language
- en
- Licence
- Funders
- European Commission (334502)
- Medical Research Council
- Biotechnology and Biological Sciences Research Council
- Innovative Medicines Initiative
- Wellcome Trust
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