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Cited by 358

The DOI matches its Crossref record; 2 of the 2 references it cites were found in a registry or an index.

Estimating the size of the bacterial pan-genome

Lapierre, Pascal, Gogarten, J. Peter·2009·Trends in Genetics
DOI 10.1016/j.tig.2008.12.004
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Research works printed but not linked: 22

  1. Snel, 2002, Genomes in flux: the evolution of archaeal and proteobacterial gene content, Genome Res., 12, 17, 10.1101/gr.176501 · DOI · Paper page
  2. Koonin, 2008, Genomics of bacteria and archaea: the emerging dynamic view of the prokaryotic world, Nucleic Acids Res., 36, 6688, 10.1093/nar/gkn668 · DOI · Paper page
  3. Tettelin, 2005, Genome analysis of multiple pathogenic isolates of Streptococcus agalactiae: implications for the microbial “pan-genome”, Proc. Natl. Acad. Sci. U. S. A., 102, 13950, 10.1073/pnas.0506758102 · DOI · Paper page
  4. Hiller, 2007, Comparative genomic analyses of seventeen Streptococcus pneumoniae strains: insights into the pneumococcal supragenome, J. Bacteriol., 189, 8186, 10.1128/JB.00690-07 · DOI · Paper page
  5. Davidson, 2004, ATP-binding cassette transporters in bacteria, Annu. Rev. Biochem., 73, 241, 10.1146/annurev.biochem.73.011303.073626 · DOI · Paper page
  6. Nanavati, 2005, Substrate specificities and expression patterns reflect the evolutionary divergence of maltose ABC transporters in Thermotoga maritima, J. Bacteriol., 187, 2002, 10.1128/JB.187.6.2002-2009.2005 · doi:10.1128/jb.187.6.2002-2009.2005
  7. Fukami-Kobayashi, 2003, Parallel evolution of ligand specificity between LacI/GalR family repressors and periplasmic sugar-binding proteins, Mol. Biol. Evol., 20, 267, 10.1093/molbev/msg038 · DOI
  8. Weissman, 2004, Polyketide biosynthesis: understanding and exploiting modularity, Philos. Transact. A Math Phys. Eng. Sci., 362, 2671, 10.1098/rsta.2004.1470 · DOI
  9. Jenke-Kodama, 2006, Natural biocombinatorics in the polyketide synthase genes of the actinobacterium Streptomyces avermitilis, PLOS Comput. Biol., 2, e132, 10.1371/journal.pcbi.0020132 · DOI
  10. Yooseph, 2007, The Sorcerer II Global Ocean Sampling Expedition: expanding the universe of protein families, PLoS Biol., 5, e16, 10.1371/journal.pbio.0050016 · DOI · Paper page
  11. Daubin, 2004, Start-up entities in the origin of new genes, Curr. Opin. Genet. Dev., 14, 616, 10.1016/j.gde.2004.09.004 · DOI
  12. Gogarten, 2005, Horizontal gene transfer, genome innovation and evolution, Nat. Rev. Microbiol., 3, 679, 10.1038/nrmicro1204 · DOI · Paper page
  13. Lawrence, 1997, Amelioration of bacterial genomes: rates of change and exchange, J. Mol. Evol., 44, 383, 10.1007/PL00006158 · DOI · Paper page
  14. Hendrix, 2000, The origins and ongoing evolution of viruses, Trends Microbiol., 8, 504, 10.1016/S0966-842X(00)01863-1 · DOI · Paper page
  15. Daubin, 2003, The source of laterally transferred genes in bacterial genomes, Genome Biol., 4, R57, 10.1186/gb-2003-4-9-r57 · DOI
  16. Hsiao, 2005, Evidence of a large novel gene pool associated with prokaryotic genomic islands, PLoS Genet., 1, e62, 10.1371/journal.pgen.0010062 · DOI
  17. Aggarwal, 2002, Ab initio gene identification: prokaryote genome annotation with GeneScan and GLIMMER, J. Biosci., 27, 7, 10.1007/BF02703679 · doi:10.1007/bf02703679
  18. Tatusov, 2001, The COG database: new developments in phylogenetic classification of proteins from complete genomes, Nucleic Acids Res., 29, 22, 10.1093/nar/29.1.22 · DOI · Paper page
  19. Enright, 2002, An efficient algorithm for large-scale detection of protein families, Nucleic Acids Res., 30, 1575, 10.1093/nar/30.7.1575 · DOI · Paper page
  20. Zhang, 1998, Protein sequence similarity searches using patterns as seeds, Nucleic Acids Res., 26, 3986, 10.1093/nar/26.17.3986 · DOI · Paper page
  21. Harlow, 2004, A hybrid clustering approach to recognition of protein families in 114 microbial genomes, BMC Bioinformatics, 5, 45, 10.1186/1471-2105-5-45 · DOI
  22. Fleischmann, 1995, Whole-genome random sequencing and assembly of Haemophilus influenzae Rd, Science, 269, 496, 10.1126/science.7542800 · DOI · Paper page

Cited by

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Metadata

Authors
Lapierre, P., & Gogarten, J. P.
Venue
Trends in Genetics
Publisher
Elsevier BV
Published
2009-03
Volume
25
Issue
3
Pages
107-110
ISSN
0168-9525 (ISSN-L)
DOI
10.1016/j.tig.2008.12.004
OpenAlex
W2079327011
Cited by
358
References
2
FWCI
1.41
Type
journal article
Language
en
Open access
closed
Licence
www.elsevier.com/tdm/userlicense/1.0/ (tdm)

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CoChat. (2026). Citation check: Estimating the size of the bacterial pan-genome. https://app.cochat.ai/papers/10.1016/j.tig.2008.12.004
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Lapierre, P., & Gogarten, J. P. (2009). Estimating the size of the bacterial pan-genome. Trends in Genetics. https://doi.org/10.1016/j.tig.2008.12.004

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Contains information from the Semantic Scholar Academic Graph Datasets, made available under the ODC Attribution License (ODC-BY 1.0).

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