Big strides in cellular microRNA expression
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The study generally replicated miRNA expression estimates from prior studies while significantly adding to the number of samples upon which those estimates are based.
“It generally replicated miRNA expression estimates from prior studies [11, 12, 23], while significantly adding to the number of samples upon which those estimates are based.”
From A curated human cellular microRNAome based on 196 primary cell types (2022) · cites this paper as [23]
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Cites
Distribution of miRNA expression across human tissues
Ludwig, N., Leidinger, P., Becker, K., Backes, C., Fehlmann, T., Pallasch, C., Rheinheimer, S., Meder, B., Stähler, C., Meese, E., et al. (2016) · Nucleic Acids Research · doi:10.1093/nar/gkw116 · Cited by 968 · see citing works
Toward the human cellular microRNAome
McCall, M. N., Kim, M.-S., Adil, M., Patil, A. H., Lu, Y., Mitchell, C. J., Leal-Rojas, P., Xu, J., Kumar, M., Dawson, V. L., et al. (2017) · Genome Research · doi:10.1101/gr.222067.117 · Cited by 151 · see citing works
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Research works printed but not linked: 11
- [1]Kent OA 2014 Lessons from miR-143/145: the importance of cell-type localization of miRNAs Nucleic Acids Res 42 12 7528 38 24875473 PMC4081080
- [2]McCall MN 2011 MicroRNA profiling of diverse endothelial cell types BMC Med Genomics 4 78 22047531 PMC3223144
- [3]Witwer KW Halushka MK 2016 Toward the promise of microRNAs - Enhancing reproducibility and rigor in microRNA research RNA Biol 13 11 1103 1116 27645402 PMC5100345
- [4]de Rie D 2017 An integrated expression atlas of miRNAs and their promoters in human and mouse Nat Biotechnol 35 9 872 878 28829439 PMC5767576
- [5]Juzenas S 2017 A comprehensive, cell specific microRNA catalogue of human peripheral blood Nucleic Acids Res 45 16 9290 9301 28934507 PMC5766192
- [8]Fromm B 2015 A Uniform System for the Annotation of Vertebrate microRNA Genes and the Evolution of the Human microRNAome Annu Rev Genet 49 213 42 26473382 PMC4743252
- [9]Pritchard CC 2012 MicroRNA profiling: approaches and considerations Nat Rev Genet 13 5 358 69 22510765 PMC4517822
- [10]Baras AS 2015 miRge - A Multiplexed Method of Processing Small RNA-Seq Data to Determine MicroRNA Entropy PLoS One 10 11 e0143066 26571139 PMC4646525
- [11]Kuosmanen SM 2017 MicroRNA Profiling Reveals Distinct Profiles for Tissue-Derived and Cultured Endothelial Cells Sci Rep 7 1 10943 28887500 PMC5591252
- [12]Schwarz EC 2016 Deep characterization of blood cell miRNomes by NGS Cell Mol Life Sci 73 16 3169 81 26874686 PMC11108270
- [13]Pinzon N 2017 microRNA target prediction programs predict many false positives Genome Res 27 2 234 245 28148562 PMC5287229
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A curated human cellular microRNAome based on 196 primary cell types
Patil, A. H., Baran, A., Brehm, Z. P., McCall, M. N., & Halushka, M. K. (2022) · GigaScience · doi:10.1093/gigascience/giac083 · Cited by 30 · see citing works
Self-citation
- Authors
- Halushka, M. K., Fromm, B., Peterson, K. J., & McCall, M. N.
- ORCID
- Halushka, Marc K.
- Venue
- Trends in Genetics
- Publisher
- Elsevier BV
- Published
- 2018-03
- Volume
- 34
- Issue
- 3
- Pages
- 165-167
- ISSN
- 0168-9525
- PMC
- PMC5834366
- Cited by
- 32
- References
- 2
- Language
- en
- Licence
- Funders
- National Institutes of Health (1R01HL137811)
- American Heart Association (17GRNT33670405)
- South-Eastern Norway Regional Health Authority (2014041)
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