Automated image-based tracking and its application in ecology

Dell, Anthony I., Bender, John A., Branson, Kristin, Couzin, Iain D., de Polavieja, Gonzalo G., Noldus, Lucas P.J.J., Pérez-Escudero, Alfonso, Perona, Pietro +3 more·2014·Trends in Ecology & Evolution

Cited by (494)

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  1. Sizing mudsnails: Applying superpixels to scale growth detection under ocean warming
    Liam MacNeil, Léa J. Joly, Maysa Ito, Anna Steinmann, Knut Mehler, Marco Scotti · 2024 · Methods in Ecology and Evolution
  2. The effect of acute social isolation on neural molecular responses in components of the social decision-making network
    Patricia Castro Lopes, Madeleine Chang, Faith Holloway, Biola Fatusin, Sachin Patel, Chandler Siemonsma, Morgan Kindel · 2024 · BMC Genomics
  3. Models of Animal Behavior as Active Particle Systems with Nonreciprocal Interactions
    Amir Haluts, Dan Gorbonos, Nir S. Gov · 2024 · Modeling and simulation in science, engineering & technology
  4. Counting Large Flocks of Birds Using Videos Acquired with Hand-Held Devices
    Amanda Dash, Alexandra Branzan Albu · 2017 · Lecture notes in computer science
  5. Deep Distance Transform to Segment Visually Indistinguishable Merged Objects
    Sören Klemm, Xiaoyi Jiang, Benjamin Risse · 2019 · Lecture notes in computer science
  6. Research on Key Feature Extraction and Position Accurate Tracking Based on Computer Vision Image
    Yan Sun · 2019 · Journal of Physics Conference Series
  7. High-speed CAMShift Tracking of Insect on GPU
    Ziqiang Xu, Yuman Nie, Pingguo Cao, Quanjun Song · 2018 · IEEE International Conference on Information and Automation (ICIA)
  8. Size and shape of tracked Brownian bridges
    Abdulrahman Alsolami, James Burridge, Michał Gnacik · 2020 · Journal of Physics A Mathematical and Theoretical
  9. Research on Application of Image Recognition and Tracking Technology Based on Moving Objects
    Lin Lin · 2020 · International Conference on Smart Grid and Electrical Automation (ICSGEA)
  10. Using remote camera traps to assess mammal and bird assemblages across a complex environmental landscape
    C. Cloyed, L. Cappelli, David A. Tilson, J. A. Crawford, A. Dell · 2017 · bioRxiv
  11. Tracking all members of a honey bee colony over their lifetime
    Franziska Boenisch, Benjamin Rosemann, Benjamin Wild, Fernando Wario, David M Dormagen, Tim Landgraf · 2018 · arXiv (Cornell University)
  12. Calibration-free 3D reconstruction of firefly trajectories from 360-degree cameras
    Raphaël Sarfati, Orit Peleg · 2021 · bioRxiv (Cold Spring Harbor Laboratory)
  13. Postural analysis reveals persistent vigilance in paper wasps after conspecific challenge
    Andrew Wesley Legan, Caleb C. Vogt, Michael J. Sheehan · 2022 · bioRxiv (Cold Spring Harbor Laboratory)
  14. Integrating trait-based movement into mechanistic predictions of thermal performance
    Jördis F. Terlau, Ulrich Brose, Ana Carolina Antunes, Emilio Berti, Thomas Boy, Benoît Gauzens, Samraat S. Pawar, Malin L. Pinsky, Remo Ryser, Myriam R. Hirt · 2022 · Research Square
  15. Shortwave infrared (SWIR) fluorescence imaging of peripheral organs in awake and freely moving mice
    Bernardo Assein Arús, Emily D. Cosco, Joycelyn Yiu, Ilaria Balba, Thomas S. Bischof, Ellen M. Sletten, Oliver T. Bruns† · 2023 · bioRxiv (Cold Spring Harbor Laboratory)
  16. Evaluating, Implementing, and Applying Methods for Analysing Animal Biotelemetry Data
    Johannes Signer · 2016
  17. Nocturnal Homing in the Amblypygid Phrynus Marginemaculatus
    Jacob M. Graving · 2015 · OhioLink ETD Center (Ohio Library and Information Network)
  18. Incremental Environmental Monitoring for Revealing the Ecology of Endangered Fish
    Yoshinari SHIRAI, Yasue Kishino, Shin Mizutani, Yutaka Yanagisawa, Takayuki Suyama, Takuma Otsuka, Tadao Kitagawa, Futoshi Naya · 2018 · IEICE Transactions on Communications
  19. Dolphins in Space: Quantifying the Relative Positions of Bottlenose Dolphins (Tursiops truncatus)
    Megan S McGrath · 2019 · CUNY Academic Works (City University of New York)
  20. Steady-State Analysis of Multi-agent Collective Behavior
    Hui Wei, Mingxin Shen, Xuebo Chen · 2019 · Advances in intelligent systems and computing
  21. Robust tracking and behavioral modeling of movements of biological collectives from ordinary video recordings
    Hiroki Sayama, Farnaz Zamani Esfahlani, Ali Reza Jazayeri, J. Scott Turner · 2017 · IEEE Symposium Series on Computational Intelligence (SSCI)
  22. Understanding mammals, hands-on
    Andrea Ravignani · 2019 · Journal of Mammalogy
  23. Detecting Unknown Behaviors by Pre-defined Behaviours: An Bayesian Non-parametric Approach
    Jin Watanabe, Takatomi Kubo, Fan Yang, Kazushi Ikeda · 2019 · arXiv (Cornell University)
  24. Quantification Analysis of Behavioral Changes after Sciatic Nerve Ligation in Rats
    Panyawut Sri-iesaranusorn, Saeka Shimochi, Naoki Ono, Emrah Yatkin, Hidehiro Iida, Kazushi Ikeda, Junichiro Yoshimoto · 2020
  25. Peer Review #1 of "scAnt—an open-source platform for the creation of 3D models of arthropods (and other small objects) (v0.1)"
    2021 · PeerJ
  26. Peer Review #3 of "scAnt—an open-source platform for the creation of 3D models of arthropods (and other small objects) (v0.1)"
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  27. Peer Review #2 of "scAnt—an open-source platform for the creation of 3D models of arthropods (and other small objects) (v0.1)"
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  28. Food web stability and connectance predicted from body-size constraints on trophic topology, self-regulation, and total consumption
    Tianyun Lin, Daniel J. Wieczynski, Van M. Savage · 2022 · Research Square
  29. Tracking and analysis of movement at different scales
    Dimitra G. Georgopoulou · 2020
  30. Peer Review #3 of "Measuring inter-individual differences in behavioural types of gilthead seabreams in the laboratory using deep learning (v0.2)"
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  31. Peer Review #2 of "Measuring inter-individual differences in behavioural types of gilthead seabreams in the laboratory using deep learning (v0.1)"
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  32. Peer Review #2 of "Measuring inter-individual differences in behavioural types of gilthead seabreams in the laboratory using deep learning (v0.2)"
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  33. Peer Review #1 of "Measuring inter-individual differences in behavioural types of gilthead seabreams in the laboratory using deep learning (v0.1)"
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  34. Peer Review #3 of "Measuring inter-individual differences in behavioural types of gilthead seabreams in the laboratory using deep learning (v0.1)"
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  35. Peer Review #1 of "Measuring inter-individual differences in behavioural types of gilthead seabreams in the laboratory using deep learning (v0.2)"
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  36. Works Cited
    Sebastian Vehlken · 2019 · Amsterdam University Press eBooks
  37. Análisis de recurrencia en la actividad locomotora en cochinillas en función del nivel de humedad
    Jorge A. Ruiz, Cristina G. Guerrero Sánchez · 2022 · Revista de psicología
  38. A novel method for investigating fish social behaviour in the field
    Molly A. Clark, Christos C. Ioannou · 2022 · bioRxiv (Cold Spring Harbor Laboratory)
  39. Langue et science, langage et pensée
    Guy Theraulaz A · 2020 · Odile Jacob eBooks
  40. Toward Real-Time Animal Tracking with Integrated Stimulus Control for Automated Conditioning in Aquatic Eco-Neurotoxicology
    Yutao Bai, Jason Henry, Eva Cheng, Stuart William Perry, David Mawdsley, Bob B. M. Wong, Jan Kaslin, Donald Włodkowic · 2023 · Environmental Science & Technology
  41. Characterizing Pairwise U-Turn Behavior in Fish: A Data-Driven Analysis
    Tao Yuan, Yuchen Zhou, Zhicheng Zheng, Xiaokang Lei, Xingguang Peng · 2023 · Entropy
  42. Predicting thresholds for population replacement gene drives
    Anna Janzen, Ratnasri Pothula, Adam Sychla, Nathan R. Feltman, Michael J. Smanski · 2024 · BMC Biology
  43. Focusing on Dynamics: When an Exception Becomes a Rule
    Alfredo Vicente Peretti, Lucía S. Calbacho-Rosa, Paola A. Olivero, Mariela A. Oviedo‐Diego, David E. Vrech · 2024 · Springer eBooks
  44. Voronoi diagrams and Delaunay triangulation for modelling animal territorial behaviour
    Rhainer Guillermo Nascimento Ferreira, Alexander E. Filippov, Alexander E. Kovalev, Stanislav N. Gorb · 2024 · Ecology and Evolution
  45. Unsupervised multi-animal tracking for quantitative ethology
    Yixin Li, Xinyang Li, Qi Zhang, Yuanlong Zhang, Jiaqi Fan, Zhi Lü, Ziwei Li, Jiamin Wu, Qionghai Dai · 2025 · bioRxiv (Cold Spring Harbor Laboratory)
  46. Using supervised machine learning to quantify cleaning behaviour
    Raúl Oliveira, Nuno C. Garcia, José Ricardo Paula · 2025 · bioRxiv (Cold Spring Harbor Laboratory)
  47. The Synergy of Artificial Intelligence and Animal Communication
    Arun Agrawal, Anuja Manoj Chavan, Swati Nilesh Pawar, Ashvini Arvind Todkar, Deepak Gupta, Deepak Sudhakar Dharrao, Rakhi Arora, Rajeev Kumar Singh · 2025 · Advances in computational intelligence and robotics book series
  48. AnimalAI: An Open-Source Web Platform for Automated Animal Activity Index Calculation Using Interactive Deep Learning Segmentation
    Mahtab Saeidifar, Guoming Li, Lakshmish Macheeri Ramaswamy, Chongxiao Chen, Ehsan Asali · 2025 · Animals
  49. Thermotaxis behavior of Drosophila melanogaster : A quantitative analysis of sensory-motor integration and heat avoidance
    Zeinab Moradi, Sara Jahedazad, Ehsan Hosseinian, Tayebeh Minaei, Ali Sadighi · 2025 · bioRxiv (Cold Spring Harbor Laboratory)
  50. A centralised multi‐unit recording system for automated, off‐grid animal observation and environmental monitoring
    Marçal Pou‐Rossell, Daniel Sol, Jolle Wolter Jolles · 2025 · Methods in Ecology and Evolution
  51. Long-term and low-concentration inhalation toxicity of toluene in Drosophila melanogaster based on a computer vision method
    Xiaoying Li, Chunhui Li, Xinran Zeng, Zhenhai Li · 2025 · Indoor and Built Environment
  52. New methods and technologies to record sheep behaviors
    Meng-Hua Li, Hosein Salehian-Dehkordi · 2025 · Elsevier eBooks
  53. vassi – verifiable, automated scoring of social interactions in animal groups
    Paul Nührenberg, Aneesh P. H. Bose, Alex L. Jordan · 2025 · eLife
  54. vassi – verifiable, automated scoring of social interactions in animal groups
    Paul Nührenberg, Aneesh P. H. Bose, Alex L. Jordan · 2025 · eLife
  55. An implementation for the video processing of Barnes maze experiments in computational biophysics
    Vanessa Ramírez-Pérez, José A. Guerrero-Díaz-de-León, Jorge E. Macías‐Díaz, Carlos H. López-Lariz · 2025 · International Journal of Modern Physics C
  56. When and how to automate image analysis for wildlife monitoring? Guidelines and lessons from a worked example of seabirds in a dynamic coastal environment
    Claire A. Carrington, Peter J. Lawrence, Ludmila Ilieva Kuncheva, Francis J. Williams, Samuel L. Hennessey, James J. Waggitt · 2025 · Bird Study
  57. Additional file 3 of Honeybee communication during collective defence is shaped by predation
    Andrea López-Incera, Morgane Nouvian, Katja Ried, Thomas Müller, Briegel, Hans J. · 2021 · Figshare
  58. Additional file 1 of Predicting movement speed of beetles from body size and temperature
    Jördis F. Terlau, Ulrich Brose, Thomas Boy, Pawar, Samraat, Malin L. Pinsky, Myriam R. Hirt · 2024 · Figshare
  59. Additional file 1 of Hyperspectral lidar for monitoring high-resolution activity patterns of African stingless bee species
    Hampus Månefjord, Andrew Atiogbe Huzortey, Rabbi Boateng, Gbogbo, Y. Adolphe, Assoumou saint-doria Yamoa, Jérémie T. Zoueu, Kwapong, Peter K., Benjamin Anderson, Mikkel S. Brydegaard · 2024 · Figshare
  60. Additional file 2 of Honeybee communication during collective defence is shaped by predation
    Andrea López-Incera, Morgane Nouvian, Katja Ried, Thomas Müller, Briegel, Hans J. · 2021 · Figshare
  61. vassi – verifiable, automated scoring of social interactions in animal groups
    Paul Nührenberg, Aneesh P. H. Bose, Alex L. Jordan · 2025 · bioRxiv (Cold Spring Harbor Laboratory)
  62. Additional file 1 of Honeybee communication during collective defence is shaped by predation
    Andrea López-Incera, Morgane Nouvian, Katja Ried, Thomas Müller, Briegel, Hans J. · 2021 · Figshare
  63. Additional file 2 of Deep learning-based behavioral profiling of rodent stroke recovery
    R. Weber, Geertje Mulders, Julia Kaiser, Christian Tackenberg, Ruslan Rust · 2022 · Figshare
  64. Additional file 1 of When complex movement yields simple dispersal: behavioural heterogeneity, spatial spread and parasitism in groups of micro-wasps
    Victor Burte, Mélina Cointe, Guy Pérez, Ludovic Mailleret, Vincent Calcagno · 2024 · Figshare
  65. Additional file 2 of Predicting thresholds for population replacement gene drives
    Anna Janzen, Ratnasri Pothula, Adam Sychla, Nathan R. Feltman, Michael J. Smanski · 2024 · Figshare
  66. Additional file 1 of Deep learning-based behavioral profiling of rodent stroke recovery
    R. Weber, Geertje Mulders, Julia Kaiser, Christian Tackenberg, Ruslan Rust · 2022 · Figshare
  67. Additional file 1 of Predicting thresholds for population replacement gene drives
    Anna Janzen, Ratnasri Pothula, Adam Sychla, Nathan R. Feltman, Michael J. Smanski · 2024 · Figshare
  68. Ethical and Societal Implications of AI in Human-Animal Communication
    Chika Lilian Onyagu, Etaoghene Paul Polo · 2026 · Advances in computational intelligence and robotics book series
  69. Improved monitoring of hares (Lepus spp.) using thermal imaging combined with distance sampling
    C. Berndt, Petter Kjellander, Göran Spong, Carl‐Gustaf Thulin · 2026 · European Journal of Wildlife Research
  70. Phénologies, mécanismes et perturbations anthropiques des dynamiques de migration dulçaquicoles des espèces amphidromes : cas des Sicydiinae de La Réunion
    Raphaël Lagarde · 2018
  71. Mechanisms and roles of information processing in collective motion
    Lì Jiāng · 2017 · theses.fr (ABES)
  72. Experimental analysis and modelling of the behavioural interactions underlying the coordination of collective motion and the propagation of information in fish schools
    Valentin Lecheval · 2017 · theses.fr (ABES)
  73. Étude des stratégies de mouvement chez les parasitoïdes du genre Trichogramma : apports des techniques d’analyse d’images automatiques
    Victor Burte · 2018
  74. Cultural evolution of birdsong in the laboratory
    Lucille Le Maguer · 2019
  75. Approche théorique et expérimentale du choix de source et de la gestion collective des ressources alimentaires chez la fourmi
    Olivier Bles · 2019
  76. From molecules to behavior : network effects of Alzheimer's disease-associated amyloid beta peptides in a Drosophila melanogaster larval circuit
    Anqi Zhou · 2024 · theses.fr (ABES)
  77. Analysis of collective phases in fish school models with burst-and-coast swimming
    Weijia Wang · 2023
  78. La cognition des larves de moustique comme indicateur biologique de la qualité des écosystèmes aquatiques
    Martin Dessart · 2024
  79. Group size and the strength of social interactions determine the collective response to perturbation in a model of burst-and-coast swimming fish
    Guozheng Lin, Ramón Escobedo, Zhangang Han, Clément Sire, Guy Theraulaz A · 2026 · Royal Society Open Science
  80. A Method for Reconstructing and Modeling Social Interactions in Moving Animal Groups from Trajectory Data
    Ramón Escobedo, Clément Sire, Guy Theraulaz A · 2025 · Springer eBooks
  81. Semi-automated detection of cleaning interactions using supervised machine learning
    Raul Oliveira, Nuno C. Garcia, Jose Ricardo Paula · 2026 · Scientific Reports
  82. Multiobject Tracking for Animal Behavior Measurement on the Chinese Space Station: Motion Decoupling and Progressive Feature Fusion
    Zhuang Zhou, Shengyang Li, Yixuan Lv, Kang Liu, Rong Yang, Han Wang · 2026 · IEEE Transactions on Instrumentation and Measurement
  83. ManuTrace : An HTML ‐Based Interface for Manually Extracting Movement Trajectory Data From a Video
    Kiyotaka Yabe, Yuna Tosaka, Kenji Matsuura · 2026 · Ecology and Evolution
  84. The effect of experimenter experience on behavioural measures in zebrafish: Comparison of observation-based and video-tracking methods
    Kelly Cheung, Selena Gangaram, Michael Pei Xue Ge, Jenny Sung, Kenneth Wong, Liam Howatson, Alison Lai, Steven Li, Benjamin Tsang, Robert T. Gerlai · 2026 · Current Research in Behavioral Sciences
  85. Using semi-folded arenas to observe spontaneous emergence of collective trails in whole colonies of termites
    Helder Hugo, Iain D. Couzin · 2026 · Movement Ecology
  86. Behavioural phenotyping with small aquatic model organisms: why digital video resolution and bitrate matter
    Hy Do, Florian Kreuder, Xuhui Han, Michael Didham, Savita Kumari, Oskar Wasielewski, Jan Kaslin, Paul A. Ramsland, Antoine Marie Dujon, Donald Włodkowic · 2026 · Behavioural Pharmacology
  87. Paracetamol Responses Depend on Temperature, Life Stage, and Genetic Background in Drosophila melanogaster Across Generations
    Birk Nete Randlev Gleerup Hundebøl, Jesper Givskov Sørensen · 2026 · Medicines
  88. Better together: Cross and joint covariances enhance signal detectability in undersampled data
    Anonymous, Sean A. Ridout, Ilya M. Nemenman · 2026 · Physical review. E
  89. A Smart‐Alarm Detection and Deterrent System for Long‐Tailed Macaque Intrusion in Human Residential Zones
    Kanyanut Homsapaya, Janya Jadejaroen, Orawan Watchanupaporn · 2026 · Journal of Medical Primatology
  90. Low-latency multicamera 3D tracking of insects with Braid
    Michael J. M. Harrap, Andrew David Straw · 2026 · bioRxiv (Cold Spring Harbor Laboratory)
  91. Artificial intelligence in soil ecotoxicology: A critical review and perspective on micro/nanoplastic exposure to earthworms
    Li Chen, Fengyu Huang, Naglaa Ibrahim, Tianyi Qiu, Jing Chen, Shuai Ma, Kexiao Song, Qi Li, Changchao Li, Haijian Bing et al. · 2026 · Soil Biology and Biochemistry
  92. Exploratory Comparison of Behavior and Welfare-Related Indicators in Captive Lions (Panthera leo) Across Three Zoo Enclosures Using Machine-Learning Quantification
    Frej Gammelgård, Silje Marquardsen Lund, Jonas Nielsen, Thea Loumand Faddersbøll, Trine Hammer Jensen, Sussie Pagh, Kirstin Anderson Hansen, Flemming Nielsen, Cino Pertoldi · 2026 · Animals
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    Fadia Al Abbar, Jasper A.J. Eikelboom, Lorenzo Fiori, Fleur Visser, Anne Grundlehner, Anne Lodder, Blair R. Costelloe, Ramon Hollands, Geert M. Aarts, Frank van Langevelde · 2026 · Marine Mammal Science
  94. SnifferBox: A Real-Time Event-Driven Olfactory Training Automation Platform for Laboratory Rats
    Gökhan Yenikaya · 2026 · Journal of Research in Veterinary Medicine