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The Iroquois homeobox gene, Irx5, is required for retinal cone bipolar cell development
Abstract
In the mouse retina, at least ten distinct types of bipolar interneurons are involved in the transmission of visual signals from photoreceptors to ganglion cells. How bipolar interneuron diversity is generated during retinal development is poorly understood. Here, we show that Irx5, a member of the Iroquois homeobox gene family, is expressed in developing bipolar cells starting at postnatal day 5 and is localized to a subset of cone bipolar cells in the mature mouse retina. In Irx5-deficient mice, defects were observed in the expression of some, but not all, immunohistological markers that define mature Type 2 and Type 3 OFF cone bipolar cells, indicating a role for Irx5 in bipolar cell differentiation. The differentiation of these two bipolar cell types has previously been shown to require the homeodomain-CVC transcription factor, Vsx1. However, the defects observed in Irx5-deficient retinas do not coincide with a reduction of Vsx1 expression, and conversely, the expression of Irx5 in cone bipolar cells does not require the presence of a functional Vsx1 allele. These results indicate that there are at least two distinct genetic pathways (Irx5-dependent and Vsx1-dependent) regulating the development of Type 2 and Type 3 cone bipolar cells.
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“IRX5 is involved in embryonic development so demethylation of its promoter with age may lead to inappropriate expression (Costantini et al., 2005; Cheng et al., 2005).”
From Multi-omic rejuvenation of human cells by maturation phase transient reprogramming (2022) · cites this paper as Cheng et al., 2005
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“IRX5 is involved in embryonic development so demethylation of its promoter with age may lead to inappropriate expression (Costantini et al., 2005; Cheng et al., 2005).”
From Multi-omic rejuvenation of human cells by maturation phase transient reprogramming (2022) · cites this paper as Cheng et al., 2005
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Research works printed but not linked: 51
- Bao, 1999, Regulation of chamber-specific gene expression in the developing heart by Irx4, Science, 283, 1161, 10.1126/science.283.5405.1161 · DOI
- Barnstable, 1985, A marker of early amacrine cell development in rat retina, Brain Res., 352, 286, 10.1016/0165-3806(85)90116-6 · DOI
- Bellefroid, 1998, Xiro3 encodes a Xenopus homolog of the Drosophila Iroquois genes and functions in neural specification, EMBO J., 17, 191, 10.1093/emboj/17.1.191 · DOI
- Bone-Larson, 2000, Partial rescue of the ocular retardation phenotype by genetic modifiers, J. Neurobiol., 42, 232, 10.1002/(SICI)1097-4695(20000205)42:2<232::AID-NEU7>3.0.CO;2-4 · DOI
- Bosse, 1997, Identification of the vertebrate Iroquois homeobox gene family with overlapping expression during early development of the nervous system, Mech. Dev., 69, 169, 10.1016/S0925-4773(97)00165-2 · DOI
- Bosse, 2000, Identification of a novel mouse Iroquois homeobox gene, Irx5, and chromosomal localisation of all members of the mouse Iroquois gene family, Dev. Dyn., 218, 160, 10.1002/(SICI)1097-0177(200005)218:1<160::AID-DVDY14>3.0.CO;2-2 · DOI
- Bramblett, 2004, The transcription factor Bhlhb4 is required for rod bipolar cell maturation, Neuron, 43, 779, 10.1016/j.neuron.2004.08.032 · DOI
- Briscoe, 2000, A homeodomain protein code specifies progenitor cell identity and neuronal fate in the ventral neural tube, Cell, 101, 435, 10.1016/S0092-8674(00)80853-3 · DOI
- Bruneau, 2000, Cardiac expression of the ventricle-specific homeobox gene Irx4 is modulated by Nkx2-5 and dHand, Dev. Biol., 217, 266, 10.1006/dbio.1999.9548 · DOI
- Bruneau, 2001, Cardiomyopathy in Irx4-deficient mice is preceded by abnormal ventricular gene expression, Mol. Cell. Biol., 21, 1730, 10.1128/MCB.21.5.1730-1736.2001 · DOI
- Burmeister, 1996, Ocular retardation mouse caused by Chx10 homeobox null allele: impaired retinal progenitor proliferation and bipolar cell differentiation, Nat. Genet., 12, 376, 10.1038/ng0496-376 · DOI
- Cavodeassi, 1999, Compartments and organising boundaries in the Drosophila eye: the role of the homeodomain Iroquois proteins, Development, 126, 4933, 10.1242/dev.126.22.4933 · DOI
- Cavodeassi, 2001, The Iroquois family of genes: from body building to neural patterning, Development, 128, 2847, 10.1242/dev.128.15.2847 · DOI
- Cho, 1998, Fringe is essential for mirror symmetry and morphogenesis in the Drosophila eye, Nature, 396, 272, 10.1038/24394 · DOI
- Chow, 2001, Vsx1, a rapidly evolving paired-like homeobox gene expressed in cone bipolar cells, Mech. Dev., 109, 315, 10.1016/S0925-4773(01)00585-8 · DOI
- Chow, 2004, Control of late off-center cone bipolar cell differentiation and visual signaling by the homeobox gene Vsx1, Proc. Natl. Acad. Sci. U. S. A., 101, 1754, 10.1073/pnas.0306520101 · DOI
- Cohen, 2000, Expression of two novel mouse Iroquois homeobox genes during neurogenesis, Mech. Dev., 91, 317, 10.1016/S0925-4773(99)00263-4 · DOI
- Ding, 1996, Localization of the neuromedin K receptor (NK3) in the central nervous system of the rat, J. Comp. Neurol., 364, 290, 10.1002/(SICI)1096-9861(19960108)364:2<290::AID-CNE8>3.0.CO;2-0 · DOI
- Dizhoor, 1991, Recoverin: a calcium sensitive activator of retinal rod guanylate cyclase, Science, 251, 915, 10.1126/science.1672047 · DOI
- Dominguez, 1998, A dorsal/ventral boundary established by Notch controls growth and polarity in the Drosophila eye, Nature, 396, 276, 10.1038/24402 · DOI
- Dyer, 2000, Control of Muller glial cell proliferation and activation following retinal injury, Nat. Neurosci., 3, 873, 10.1038/78774 · DOI
- Galli-Resta, 1997, Mosaics of islet-1-expressing amacrine cells assembled by short-range cellular interactions, J. Neurosci., 17, 7831, 10.1523/JNEUROSCI.17-20-07831.1997 · DOI
- Ghosh, 2004, Types of bipolar cells in the mouse retina, J. Comp. Neurol., 469, 70, 10.1002/cne.10985 · DOI
- Gómez-Skarmeta, 1996, Araucan and caupolican provide a link between compartment subdivisions and patterning of sensory organs and veins in the Drosophila wing, Genes Dev., 10, 2935, 10.1101/gad.10.22.2935 · DOI
- Gómez-Skarmeta, 2002, Iroquois genes: genomic organization and function in vertebrate neural development, Curr. Opin. Genet. Dev., 12, 403, 10.1016/S0959-437X(02)00317-9 · DOI
- Green, 2003, Genetic rescue of cell number in a mouse model of microphthalmia: interactions between Chx10 and G1-phase cell cycle regulators, Development, 130, 539, 10.1242/dev.00275 · DOI
- Haeseleer, 2000, Five members of a novel Ca(2+)-binding protein (CABP) subfamily with similarity to calmodulin, J. Biol. Chem., 275, 1247, 10.1074/jbc.275.2.1247 · DOI
- Hatakeyama, 2001, Roles of homeobox and bHLH genes in specification of a retinal cell type, Development, 128, 1313, 10.1242/dev.128.8.1313 · DOI
- Haverkamp, 2000, Immunocytochemical analysis of the mouse retina, J. Comp. Neurol., 424, 1, 10.1002/1096-9861(20000814)424:1<1::AID-CNE1>3.0.CO;2-V · DOI
- Haverkamp, 2003, Immunocytochemical description of five bipolar cell types of the mouse retina, J. Comp. Neurol., 455, 463, 10.1002/cne.10491 · DOI
- Houweling, 2001, Gene and cluster-specific expression of the Iroquois family members during mouse development, Mech. Dev., 107, 169, 10.1016/S0925-4773(01)00451-8 · DOI
- Itoh, 2002, A role for iro1 and iro7 in the establishment of an anteroposterior compartment of the ectoderm adjacent to the midbrain–hindbrain boundary, Development, 129, 2317, 10.1242/dev.129.10.2317 · DOI
- Jin, 2003, Irx4-mediated regulation of Slit1 expression contributes to the definition of early axonal paths inside the retina, Development, 130, 1037, 10.1242/dev.00326 · DOI
- Lebel, 2003, The Iroquois homeobox gene Irx2 is not essential for normal development of the heart and midbrain–hindbrain boundary in mice, Mol. Cell. Biol., 23, 8216, 10.1128/MCB.23.22.8216-8225.2003 · DOI
- Leyns, 1996, Iroquois: a prepattern gene that controls the formation of bristles on the thorax of Drosophila, Mech. Dev., 59, 63, 10.1016/0925-4773(96)00577-1 · DOI
- Liu, 1996, Retinal Thy-1 expression during development, Invest. Ophthalmol. Visual Sci., 37, 1469
- Masland, 2001, The fundamental plan of the retina, Nat. Neurosci., 4, 877, 10.1038/nn0901-877 · DOI
- Mo, 1997, Specific and redundant functions of Gli2 and Gli3 zinc finger genes in skeletal patterning and development, Development, 124, 113, 10.1242/dev.124.1.113 · DOI
- Mummenhoff, 2001, Expression of Irx6 during mouse morphogenesis, Mech. Dev., 103, 193, 10.1016/S0925-4773(01)00353-7 · DOI
- Nagy, 1993, Derivation of completely cell culture-derived mice from early-passage embryonic stem cells, Proc. Natl. Acad. Sci. U. S. A., 90, 8424, 10.1073/pnas.90.18.8424 · DOI
- Negishi, 1988, Dopamine cells and rod bipolar cells contain protein kinase C-like immunoreactivity in some vertebrate retinas, Neurosci. Lett., 94, 247, 10.1016/0304-3940(88)90025-0 · DOI
- Ohtoshi, 2004, Regulation of retinal cone bipolar cell differentiation and photopic vision by the CVC homeobox gene Vsx1, Curr. Biol., 14, 530, 10.1016/j.cub.2004.02.027 · DOI
- Peters, 2000, Organization of mouse Iroquois homeobox genes in two clusters suggests a conserved regulation and function in vertebrate development, Genome Res., 10, 1453, 10.1101/gr.144100 · DOI
- Rohlich, 1989, Binding pattern of anti-rhodopsin monoclonal antibodies to photoreceptor cells: an immunocytochemical study, Exp. Eye Res., 49, 999, 10.1016/S0014-4835(89)80022-3 · DOI
- Schiller, 1992, The ON and OFF channels of the visual system, Trends Neurosci., 15, 86, 10.1016/0166-2236(92)90017-3 · DOI
- Schiller, 1986, Functions of the ON and OFF channels of the visual system, Nature, 322, 824, 10.1038/322824a0 · DOI
- Sharpe, 1999, Rod pathways: the importance of seeing nothing, Trends Neurosci., 22, 497, 10.1016/S0166-2236(99)01458-7 · DOI
- Tomita, 2000, Mammalian achaete–scute and atonal homologs regulate neuronal versus glial fate determination in the central nervous system, EMBO J., 19, 5460, 10.1093/emboj/19.20.5460 · DOI
- Xiang, 1995, The Brn-3 family of POU-domain factors: primary structure, binding specificity, and expression in subsets of retinal ganglion cells and somatosensory neurons, J. Neurosci., 15, 4762, 10.1523/JNEUROSCI.15-07-04762.1995 · DOI
- Yang, 1999, Mirror controls planar polarity and equator formation through repression of fringe expression and through control of cell affinities, Development, 126, 5857, 10.1242/dev.126.24.5857 · DOI
- Young, 1985, Cell differentiation in the retina of the mouse, Anat. Rec., 212, 199, 10.1002/ar.1092120215 · DOI
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Multi-omic rejuvenation of human cells by maturation phase transient reprogramming
Gill, D., Parry, A., Santos, F., Okkenhaug, H., Todd, C. D., Hernando-Herraez, I., Stubbs, T. M., Milagre, I., & Reik, W. (2022) · eLife · doi:10.7554/elife.71624 · Cited by 185
Metadata
- Authors
- Cheng, C. W., Chow, R. L., Lebel, M., Sakuma, R., Cheung, H. O.-L., Thanabalasingham, V., Zhang, X., Bruneau, B. G., Birch, D. G., Hui, C.-C., McInnes, R. R., & Cheng, S. H.
- Venue
- Developmental Biology
- Publisher
- Elsevier BV
- Published
- 2005-11
- Volume
- 287
- Issue
- 1
- Pages
- 48-60
- ISSN
- 0012-1606
- Cited by
- 90
- References
- 0
- Language
- en
- Licence
- www.elsevier.com/tdm/userlicense/1.0/ (tdm)
- www.elsevier.com/legal/tdmrep-license (tdm)
- www.elsevier.com/open-access/userlicense/1.0/ (vor, 2815 d)
- doi.org/10.15223/policy-017 (stm-asf)
- doi.org/10.15223/policy-037 (stm-asf)
- doi.org/10.15223/policy-012 (stm-asf)
- doi.org/10.15223/policy-029 (stm-asf)
- doi.org/10.15223/policy-004 (stm-asf)
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- Cheng, C. W., Chow, R. L., Lebel, M., Sakuma, R., Cheung, H. O.-L., Thanabalasingham, V., Zhang, X., Bruneau, B. G., Birch, D. G., Hui, C.-C., McInnes, R. R., & Cheng, S. H. (2005). The Iroquois homeobox gene, Irx5, is required for retinal cone bipolar cell development. Developmental Biology. https://doi.org/10.1016/j.ydbio.2005.08.029