Residual microRNA expression dictates the extent of inner ear development in conditional Dicer knockout mice
Open accessAbstract
Inner ear development requires coordinated transformation of a uniform sheet of cells into a labyrinth with multiple cell types. While numerous regulatory proteins have been shown to play critical roles in this process, the regulatory functions of microRNAs (miRNAs) have not been explored. To demonstrate the importance of miRNAs in inner ear development, we generated conditional Dicer knockout mice by the expression of Cre recombinase in the otic placode at E8.5. Otocyst-derived ganglia exhibit rapid neuron-specific miR-124 depletion by E11.5, degeneration by E12.5, and profound defects in subsequent sensory epithelial innervations by E17.5. However, the small and malformed inner ear at E17.5 exhibits residual and graded hair cell-specific miR-183 expression in the three remaining sensory epithelia (posterior crista, utricle, and cochlea) that closely corresponds to the degree of hair cell and sensory epithelium differentiation, and Fgf10 expression required for morphohistogenesis. The highest miR-183 expression is observed in near-normal hair cells of the posterior crista, whereas the reduced utricular macula demonstrates weak miR-183 expression and develops presumptive hair cells with numerous disorganized microvilli instead of ordered stereocilia. The correlation of differential and delayed depletion of mature miRNAs with the derailment of inner ear development demonstrates that miRNAs are crucial for inner ear neurosensory development and neurosensory-dependent morphogenesis.
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The miR-96, miR-182 and miR-183 miRNA family is essential for differentiation and function of the vertebrate inner ear.
“Importantly, this highly conserved family of miRNAs shows expression in ciliated neurosensory organs across phyla and has recently been demonstrated to contribute specifically to the differentiation and function of the mechanosensory hair cells in the vertebrate inner ear (10,11).”
From A novel mutation within the MIR96 gene causes non-syndromic inherited hearing loss in an Italian family by altering pre-miRNA processing (2012) · cites this paper as [10]
The Abstract reports that residual miR-183 expression closely corresponds to the degree of hair-cell differentiation, and the Discussion (‘Hair cell development’; page unavailable) describes a critical role for miRNAs in that process. But this Dicer-knockout study does not establish that the miR-96/182/183 family specifically is essential, or demonstrate its role in hair-cell function. (LLM, conf=0.88)
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Cites
Kapsimali, M., Kloosterman, W. P., de Bruijn, E., Rosa, F., Plasterk, R. H., & Wilson, S. W. (2007) · Genome Biology · doi:10.1186/gb-2007-8-8-r173 · Cited by 376 · see citing works
Andl, T., Murchison, E. P., Liu, F., Zhang, Y., Yunta-Gonzalez, M., Tobias, J. W., Andl, C. D., Seykora, J. T., Hannon, G. J., & Millar, S. E. (2006) · Current Biology · doi:10.1016/j.cub.2006.04.005 · Cited by 359 · see citing works
Flagged first, then by citations
Research works printed but not linked: 61
- Ahmed ZM Goodyear R Riazuddin S Lagziel A Legan PK Behra M Burgess SM Lilley KS Wilcox ER Riazuddin S Griffith AJ Frolenkov GI Belyantseva IA Richardson GP Friedman TB 2006 The tip-link antigen, a protein associated with the transduction complex of sensory hair cells, is protocadherin-15 J Neurosci 26 7022 7034 16807332 PMC6673907
- Amaral PP Dinger ME Mercer TR Mattick JS 2008 The eukaryotic genome is an RNA machine Science 319 1787 1789 18369136
- Bernstein E Kim SY Carmell MA Murchison EP Alcorn H Li MZ Mills AA Elledge SJ Anderson KV Hannon GJ 2003 Dicer is essential for mouse development Nat Genet 35 215 217 14528307
- Bok J Brunet LJ Howard O Burton Q Wu DK 2007 Role of hindbrain in inner ear morphogenesis: analysis of Noggin knockout mice Dev Biol 311 69 78 17900554 PMC2215324
- Bruce LL Kingsley J Nichols DH Fritzsch B 1997 The development of vestibulocochlear efferents and cochlear afferents in mice Int J Dev Neurosci 15 671 692 9263042
- Cayirlioglu P Kadow IG Zhan X Okamura K Suh GS Gunning D Lai EC Zipursky SL 2008 Hybrid neurons in a microRNA mutant are putative evolutionary intermediates in insect CO2 sensory systems Science 319 1256 1260 18309086 PMC2714168
- Chang W Brigande JV Fekete DM Wu DK 2004 The development of semicircular canals in the inner ear: role of FGFs in sensory cristae Development 131 4201 4211 15280215
- Couzin J 2008 MicroRNAs make big impression in disease after disease Science 319 1782 1784 18369134
- Cuellar TL Davis TH Nelson PT Loeb GB Harfe BD Ullian E McManus MT 2008 Dicer loss in striatal neurons produces behavioral and neuroanatomical phenotypes in the absence of neurodegeneration Proc Natl Acad Sci USA 105 5614 5619 18385371 PMC2291142
- Dabdoub A Puligilla C Jones JM Fritzsch B Cheah KS Pevny LH Kelley MW 2008 Sox2 signaling in prosensory domain specification and subsequent hair cell differentiation in the developing cochlea Proc Natl Acad Sci USA 105 18396 18401 19011097 PMC2587543
- Daudet N Lewis J 2005 Two contrasting roles for Notch activity in chick inner ear development: specification of prosensory patches and lateral inhibition of hair-cell differentiation Development 132 541 551 15634704
- Davis TH Cuellar TL Koch SM Barker AJ Harfe BD McManus MT Ullian EM 2008 Conditional loss of Dicer disrupts cellular and tissue morphogenesis in the cortex and hippocampus J Neurosci 28 4322 4330 18434510 PMC3844796
- Farinas I Jones KR Tessarollo L Vigers AJ Huang E Kirstein M de Caprona DC Coppola V Backus C Reichardt LF Fritzsch B 2001 Spatial shaping of cochlear innervation by temporally regulated neurotrophin expression J Neurosci 21 6170 6180 11487640 PMC2710117
- Friedman LM Dror AA Avraham KB 2007 Mouse models to study inner ear development and hereditary hearing loss Int J Dev Biol 51 609 631 17891721
- Fritzsch B Barald K Lomax M Rubel EW Popper AN Fay RR Early embryology of the vertebrate ear Development of the Auditory System, Springer Handbook of Auditory Research XII Springer Verlag New York 1998 80 145
- Fritzsch B Barbacid M Silos-Santiago I 1998 Nerve dependency of developing and mature sensory receptor cells Ann NY Acad Sci 855 14 27 9929583
- Fritzsch B Beisel KW Hansen LA 2006 The molecular basis of neurosensory cell formation in ear development: a blueprint for hair cell and sensory neuron regeneration? Bioessays 28 1181 1193 17120192 PMC3901523
- Fritzsch B Beisel KW Jones K Farinas I Maklad A Lee J Reichardt LF 2002 Development and evolution of inner ear sensory epithelia and their innervation J Neurobiol 53 143 156 12382272 PMC4943216
- Fritzsch B Beisel KW Pauley S Soukup G 2007 Molecular evolution of the vertebrate mechanosensory cell and ear Int J Dev Biol 51 663 678 17891725 PMC3918877
- Fritzsch B Matei VA Nichols DH Bermingham N Jones K Beisel KW Wang VY 2005 Atoh1 null mice show directed afferent fiber growth to undifferentiated ear sensory epithelia followed by incomplete fiber retention Dev Dyn 233 570 583 15844198 PMC1242170
- Fritzsch B Silos-Santiago I Bianchi LM Farinas I 1997 Effects of neurotrophin and neurotrophin receptor disruption on the afferent inner ear innervation Semin Cell Dev Biol 8 277 284 11542690
- Fritzsch B Tessarollo L Coppola V Reichardt LF 2004 Neurotrophins in the ear: their roles in sensory neuron survival and fiber guidance Prog Brain Res 146 265 278 14699969
- Harfe BD McManus MT Mansfield JH Hornstein E Tabin CJ 2005 The RNaseIII enzyme Dicer is required for morphogenesis but not patterning of the vertebrate limb Proc Natl Acad Sci USA 102 10898 10903 16040801 PMC1182454
- Hatten ME Heintz N 1995 Mechanisms of neural patterning and specification in the developing cerebellum Annu Rev Neurosci 18 385 408 7605067
- Heimberg AM Sempere LF Moy VN Donoghue PC Peterson KJ 2008 MicroRNAs and the advent of vertebrate morphological complexity Proc Natl Acad Sci USA 105 2946 2950 18287013 PMC2268565
- Hobart O 2008 Gene regulation by transcription factors and microRNAs Science 319 1785 1786 18369135
- Jensen-Smith H Gray B Muirhead K Ohlsson-Wilhelm B Fritzsch B 2007 Long-distance three-color neuronal tracing in fixed tissue using NeuroVue dyes Immunol Invest 36 763 789 18161528 PMC2430174
- Kanellopoulou C Muljo SA Kung AL Ganesan S Drapkin R Jenuwein T Livingston DM Rajewsky K 2005 Dicer-deficient mouse embryonic stem cells are defective in differentiation and centromeric silencing Genes Dev 19 489 501 15713842 PMC548949
- Karis A Pata I van Doorninck JH Grosveld F de Zeeuw CI de Caprona D Fritzsch B 2001 Transcription factor GATA-3 alters pathway selection of olivocochlear neurons and affects morphogenesis of the ear J Comp Neurol 429 615 630 11135239
- Kelley MW 2006 Regulation of cell fate in the sensory epithelia of the inner ear Nat Rev Neurosci 7 837 849 17053809
- Kiernan AE Pelling AL Leung KK Tang AS Bell DM Tease C Lovell-Badge R Steel KP Cheah KS 2005 Sox2 is required for sensory organ development in the mammalian inner ear Nature 434 1031 1035 15846349
- Kiernan AE Xu J Gridley T 2006 The notch ligand JAG1 is required for sensory progenitor development in the mammalian inner ear PLoS Genet 2 e4 16410827 PMC1326221
- Kloosterman WP Wienholds E de Bruijn E Kauppinen S Plasterk RH 2006 In situ detection of miRNAs in animal embryos using LNA-modified oligonucleotide probes Nat Methods 3 27 29 16369549
- Leibovici M Verpy E Goodyear RJ Zwaenepoel I Blanchard S Laine S Richardson GP Petit C 2005 Initial characterization of kinocilin, a protein of the hair cell kinocilium Hear Res 203 144 153 15855039
- Lin L Bu L Cai CL Zhang X Evans S 2006 Isl1 is upstream of sonic hedgehog in a pathway required for cardiac morphogenesis Dev Biol 295 756 763 16687132
- Losick R Desplan C 2008 Stochasticity and cell fate Science 320 65 68 18388284 PMC2605794
- Lynn FC Skewes-Cox P Kosaka Y McManus MT Harfe BD German MS 2007 MicroRNA expression is required for pancreatic islet cell genesis in the mouse Diabetes 56 2938 2945 17804764
- Ma Q Anderson DJ Fritzsch B 2000 Neurogenin 1 null mutant ears develop fewer, morphologically normal hair cells in smaller sensory epithelia devoid of innervation J Assoc Res Otolaryngol 1 129 143 11545141 PMC2504536
- Ma Q Chen Z del Barco Barrantes I de la Pompa JL Anderson DJ 1998 Neurogenin1 is essential for the determination of neuronal precursors for proximal cranial sensory ganglia Neuron 20 469 482 9539122
- Makeyev EV Maniatis T 2008 Multilevel regulation of gene expression by microRNAs Science 319 1789 1790 18369137 PMC3139454
- Matei V Pauley S Kaing S Rowitch D Beisel KW Morris K Feng F Jones K Lee J Fritzsch B 2005 Smaller inner ear sensory epithelia in Neurog 1 null mice are related to earlier hair cell cycle exit Dev Dyn 234 633 650 16145671 PMC1343505
- Muljo SA Ansel KM Kanellopoulou C Livingston DM Rao A Rajewsky K 2005 Aberrant T cell differentiation in the absence of Dicer J Exp Med 202 261 269 16009718 PMC2212998
- Nichols DH Pauley S Jahan I Beisel KW Millen KJ Fritzsch B 2008 Lmx1a is required for segregation of sensory epithelia and normal ear histogenesis and morphogenesis Cell Tissue Res PMC2654344 18985389
- Ohyama T Groves AK 2004 Generation of Pax2-Cre mice by modification of a Pax2 bacterial artificial chromosome Genesis 38 195 199 15083520
- Pauley S Lai E Fritzsch B 2006 Foxg1 is required for morphogenesis and histogenesis of the mammalian inner ear Dev Dyn 235 2470 2482 16691564 PMC3901532
- Pauley S Wright TJ Pirvola U Ornitz D Beisel K Fritzsch B 2003 Expression and function of FGF10 in mammalian inner ear development Dev Dyn 227 203 215 12761848 PMC3904739
- Pierce ML Weston MD Fritzsch B Gabel HW Ruvkun G Soukup GA 2008 MicroRNA-183 family conservation and ciliated neurosensory organ expression Evol Dev 10 106 113 18184361 PMC2637451
- Pirvola U Spencer-Dene B Xing-Qun L Kettunen P Thesleff I Fritzsch B Dickson C Ylikoski J 2000 FGF/FGFR-2(IIIb) signaling is essential for inner ear morphogenesis J Neurosci 20 6125 6134 10934262 PMC6772592
- Pirvola U Ylikoski J Trokovic R Hebert J McConnell S Partanen J 2002 FGFR1 is required for the development of the auditory sensory epithelium Neuron 35 671 685 12194867
- Radde-Gallwitz K Pan L Gan L Lin X Segil N Chen P 2004 Expression of Islet1 marks the sensory and neuronal lineages in the mammalian inner ear J Comp Neurol 477 412 421 15329890 PMC4158841
- Raft S Koundakjian EJ Quinones H Jayasena CS Goodrich LV Johnson JE Segil N Groves AK 2007 Cross-regulation of Ngn1 and Math1 coordinates the production of neurons and sensory hair cells during inner ear development Development 134 4405 4415 18039969
- Rocha-Sanchez SM Morris KA Kachar B Nichols D Fritzsch B Beisel KW 2007 Developmental expression of Kcnq4 in vestibular neurons and neurosensory epithelia Brain Res 1139 117 125 17292869 PMC1858668
- Ruben RJ 1967 Development of the inner ear of the mouse: a radioautographic study of terminal mitoses Acta Otolaryngol Suppl 220 221 244 6067797
- Schaefer A O’Carroll D Tan CL Hillman D Sugimori M Llinas R Greengard P 2007 Cerebellar neurodegeneration in the absence of microRNAs J Exp Med 204 1553 1558 17606634 PMC2118654
- Simmons DD 2002 Development of the inner ear efferent system across vertebrate species J Neurobiol 53 228 250 12382278
- Soriano P 1999 Generalized lacZ expression with the ROSA26 Cre reporter strain Nat Genet 21 70 71 9916792
- Streit A 2007 The preplacodal region: an ectodermal domain with multipotential progenitors that contribute to sense organs and cranial sensory ganglia Int J Dev Biol 51 447 461 17891708
- Tessarollo L Coppola V Fritzsch B 2004 NT-3 replacement with brain-derived neurotrophic factor redirects vestibular nerve fibers to the cochlea J Neurosci 24 2575 2584 15014133 PMC3901528
- Wang Y Medvid R Melton C Jaenisch R Blelloch R 2007 DGCR8 is essential for microRNA biogenesis and silencing of embryonic stem cell self-renewal Nat Genet 39 380 385 17259983 PMC3008549
- Weston MD Pierce ML Rocha-Sanchez S Beisel KW Soukup GA 2006 MicroRNA gene expression in the mouse inner ear Brain Res 1111 95 104 16904081
- Zou D Erickson C Kim EH Jin D Fritzsch B Xu PX 2008 Eya1 gene dosage critically affects the development of sensory epithelia in the mammalian inner ear Hum Mol Genet 17 3340 3356 18678597 PMC2722896
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Sorted by citations
MicroRNA-183 family members regulate sensorineural fates in the inner ear
Li, H., Kloosterman, W., & Fekete, D. M. (2010) · The Journal of Neuroscience · doi:10.1523/jneurosci.4948-09.2010 · Cited by 140 · see citing works
Soldà, G., Robusto, M., Primignani, P., Castorina, P., Benzoni, E., Cesarani, A., Ambrosetti, U., Asselta, R., & Duga, S. (2012) · Human Molecular Genetics · doi:10.1093/hmg/ddr493 · Cited by 102 · see citing works
miRNA mutations are not a common cause of deafness
Hildebrand, M. S., Witmer, P. D., Xu, S., Newton, S. S., Kahrizi, K., Najmabadi, H., Valle, D., & Smith, R. J. H. (2010) · American Journal of Medical Genetics Part A · doi:10.1002/ajmg.a.33299 · Cited by 14 · see citing works
- Authors
- Soukup, G. A., Fritzsch, B., Pierce, M. L., Weston, M. D., Jahan, I., McManus, M. T., & Harfe, B. D.
- Affiliations
- Creighton University (US)
- University of Iowa (US)
- University of California, San Francisco (US)
- University of Florida (US)
- Corresponding author
- Soukup, Garrett A.
- ORCID
- Venue
- Developmental Biology
- Publisher
- Elsevier BV
- Published
- 2009-04
- Volume
- 328
- Issue
- 2
- Pages
- 328-341
- ISSN
- 0012-1606 (ISSN-L)
- PMC
- PMC2793102
- OpenAlex
- W1987096821
- Cited by
- 125
- References
- 2
- Citations by year
- 2026: 2 · 2025: 1 · 2024: 1 · 2023: 2 · 2022: 2 · 2021: 3 · 2020: 6 · 2019: 3 · 2018: 8 · 2017: 8 · 2016: 7 · 2015: 2 · 2014: 8 · 2013: 13 · 2012: 22
- FWCI
- 9.07
- Type
- journal article
- Language
- en
- Open access
- bronze
- doi.org
- Licence
- Locations
- Developmental Biology (publishedVersion)
- PubMed (publishedVersion)
- PubMed Central (acceptedVersion)
- Funders
- National Science Foundation
- National Institutes of Health (5p20rr018788-07)
- U.S. Public Health Service
- National Institute on Deafness and Other Communication Disorders (R01DC009025, R01DC005590)
- National Center for Research Resources (#P20 RR018788, C06RR017417)
- Office of Experimental Program to Stimulate Competitive Research
- Topics
- Life Sciences › Neuroscience › Sensory Systems › Hearing, Cochlea, Tinnitus, Genetics
- Health Sciences › Medicine › Genetics › Congenital Ear and Nasal Anomalies
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › Developmental Biology and Gene Regulation
- Keywords
- microRNA, inner ear development, Dicer, conditional knockout mice, miR-124, miR-183, otic placode, hair cell differentiation, sensory epithelia, FGF10, cochlea, utricle, stereocilia
- MeSH terms
- Animals, Cell Differentiation, Cochlea, Endoribonucleases, Epithelium, Hair Cells, Auditory, Ear, Inner, Mice, Knockout, MicroRNAs, Organogenesis, Ribonuclease III, Mice, Fibroblast Growth Factor 10, DEAD-box RNA Helicases
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