CryoEM reveals oligomeric isomers of a multienzyme complex and assembly mechanics
Open accessPublished version of a preprint
Abstract
Abstract Propionyl-CoA carboxylase (PCC) is a multienzyme complex consisting of up to six α-subunits and six ß-subunits. Belonging to a metabolic pathway converging on the citric acid cycle, it is present in most forms of life and irregularities in its assembly lead to serious illness in humans, known as propionic acidemia. Here, we report the cryogenic electron microscopy (cryoEM) structures and assembly of different oligomeric isomers of endogenous PCC from the parasitic protozoan Leishmania tarentolae (LtPCC). These structures and their statistical distribution reveal the mechanics of PCC assembly and disassembly at equilibrium. We show that, in solution, endogenous LtPCC ß-subunits form stable homohexamers, to which different numbers of α-subunits attach. Sorting LtPCC particles into seven classes (i.e., oligomeric formulas α 0 β 6 , α 1 β 6 , α 2 β 6 , α 3 β 6 , α 4 β 6 , α 5 β 6 , α 6 β 6 ) enables formulation of a model for PCC assembly. Our results suggest how multimerization regulates PCC enzymatic activity and showcase the utility of cryoEM in revealing the statistical mechanics of reaction pathways.
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Highly accurate protein structure prediction with AlphaFold
Jumper, J., Evans, R., Pritzel, A., Green, T., Figurnov, M., Ronneberger, O., Tunyasuvunakool, K., Bates, R., Žídek, A., Potapenko, A., et al. (2021) · Nature · doi:10.1038/s41586-021-03819-2 · Cited by 43,764 · see citing works
Liu, S., Xia, X., Zhen, J., Li, Z., & Zhou, Z. H. (2022) · Cell Discovery · doi:10.1038/s41421-022-00487-y · Cited by 29 · see citing works
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- Authors
- Lee, J. K. J., Liu, Y.-T., Hu, J. J., Aphasizheva, I., Aphasizhev, R., & Zhou, Z. H.
- Affiliations
- California NanoSystems Institute (US)
- Boston University (US)
- Corresponding author
- Zhou, Z. Hong
- Venue
- Journal of Structural Biology: X
- Publisher
- Elsevier BV
- Published
- 2023
- Volume
- 7
- Pages
- 100088
- ISSN
- 2590-1524 (ISSN-L)
- PMC
- PMC10148081
- OpenAlex
- W4362717659
- Cited by
- 16
- References
- 2
- Citations by year
- 2026: 2 · 2024: 12 · 2023: 1 · 2022: 1
- FWCI
- 1.33
- Type
- journal article
- Language
- en
- Open access
- gold
- doi.org
- Licence
- Locations
- Journal of Structural Biology X (publishedVersion, cc-by)
- bioRxiv (Cold Spring Harbor Laboratory) (acceptedVersion, cc-by-nc-nd)
- PubMed Central (publishedVersion, cc-by)
- PubMed (publishedVersion)
- DOAJ (DOAJ: Directory of Open Access Journals) (submittedVersion, cc-by-sa)
- Funders
- National Science Foundation (DBI-133813, DMR-1548924)
- National Institutes of Health
- University of California, Los Angeles
- National Institute of Health and Medical Research (R01AI101057, R01GM071940, S10OD018111, S10RR23057)
- Topics
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Structural Biology › Advanced Electron Microscopy Techniques and Applications
- Physical Sciences › Materials Science › Materials Chemistry › Enzyme Structure and Function
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › Protein Structure and Dynamics
- Keywords
- propionyl-CoA carboxylase, multienzyme complex, Leishmania tarentolae, propionic acidemia, homohexamer, alpha and beta subunits, multimerization, cryo-EM structure
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