The DOI matches its Crossref record; 57 of the 57 references it cites were found in a registry or an index.
The Hitchhiker’s guide to Hi-C analysis: Practical guidelines
Open accessAbstract
Over the last decade, development and application of a set of molecular genomic approaches based on the chromosome conformation capture method (3C), combined with increasingly powerful imaging approaches, have enabled high resolution and genome-wide analysis of the spatial organization of chromosomes. The aim of this paper is to provide guidelines for analyzing and interpreting data obtained with genome-wide 3C methods such as Hi-C and 3C-seq that rely on deep sequencing to detect and quantify pairwise chromatin interactions genome-wide.
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Cites
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Comprehensive Mapping of Long-Range Interactions Reveals Folding Principles of the Human Genome
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Self-citationPower-Law Distributions in Empirical Data
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Capturing Chromosome Conformation
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Self-citationSpatial partitioning of the regulatory landscape of the X-inactivation centre
Nora, E. P., Lajoie, B. R., Schulz, E. G., Giorgetti, L., Okamoto, I., Servant, N., Piolot, T., van Berkum, N. L., Meisig, J., Sedat, J., et al. (2012) · Nature · doi:10.1038/nature11049 · Cited by 2,895
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Cited by
HiC-Pro: an optimized and flexible pipeline for Hi-C data processing.
Servant, N., Varoquaux, N., Lajoie, B. R., Viara, E., Chen, C.-J., Vert, J.-P., Heard, E., Dekker, J., & Barillot, E. (2015) · Genome Biology · doi:10.1186/s13059-015-0831-x · Cited by 2,565
“A high quality Hi-C experiment on the human genome is typically characterized by at least 40 % of intra-chromosomal interactions [9].”
Self-citationFormation of chromosomal domains by loop extrusion
Fudenberg, G., Imakaev, M., Lu, C., Goloborodko, A., Abdennur, N., & Mirny, L. A. (2016) · Cell Reports · doi:10.1016/j.celrep.2016.04.085 · Cited by 2,003
Nora, E. P., Goloborodko, A., Valton, A.-L., Gibcus, J. H., Uebersohn, A., Abdennur, N., Dekker, J., Mirny, L. A., & Bruneau, B. G. (2017) · Cell · doi:10.1016/j.cell.2017.05.004 · Cited by 1,709
Self-citationCooler: scalable storage for Hi-C data and other genomically labeled arrays
Abdennur, N., & Mirny, L. A. (2020) · Bioinformatics · doi:10.1093/bioinformatics/btz540 · Cited by 1,759
Two independent modes of chromatin organization revealed by cohesin removal
Schwarzer, W., Abdennur, N., Goloborodko, A., Pekowska, A., Fudenberg, G., Loe-Mie, Y., Fonseca, N. A., Huber, W., Haering, C. H., Mirny, L., et al. (2017) · Nature · doi:10.1038/nature24281 · Cited by 1,196
Metadata
- Authors
- Lajoie, B. R., Dekker, J., & Kaplan, N.
- Venue
- Methods
- Publisher
- Elsevier BV
- Published
- 2015-01
- Volume
- 72
- Pages
- 65-75
- ISSN
- 1046-2023 (ISSN-L)
- OpenAlex
- W2020912279
- Cited by
- 385
- References
- 57
- FWCI
- 6.57
- Type
- journal article
- Language
- en
- Open access
- green
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