Cited by 89Skin and Cellular Biology ResearchCellular Mechanics and InteractionsProtein Structure and Dynamics

Relating interactions between neurofilaments to the structure of axonal neurofilament distributions through polymer brush models

Open access
Kumar, Sanjay, Yin, Xinghua, Trapp, Bruce D., Hoh, Jan H., Paulaitis, Michael E.·2002·Biophysical Journal

Abstract

Neurofilaments (NFs) have been proposed to interact with one another through mutual steric exclusion of their unstructured C-terminal "sidearm" domains, producing order in axonal NF distributions and conferring mechanical strength to the axon. Here we apply theory developed for polymer brushes to examine the relationship between the brush properties of the sidearms and NF organization in axons. We first measure NF-NF radial distribution functions and occupancy probability distributions for adult mice. Interpreting the probability distributions using information theory, we show that the NF distributions may be represented by a single pair potential of mean force. Then, to explore the relationship between model parameters and NF architecture, we conduct two-dimensional Monte Carlo simulations of NF cross-sectional distributions. We impose purely repulsive interaction potentials in which the sidearms are represented as neutral and polyelectrolyte chains. By treating the NFs as telechelic polymer brushes, we also incorporate cross-bridging interactions. Both repulsive potentials are capable of reproducing NF cross-sectional densities and their pair correlations. We find that NF structure is sensitive to changes in brush thickness mediated by chain charge, consistent with the experimental observation that sidearm phosphorylation regulates interfilament spacing. The presence of attractive cross-bridging interactions contributes only modestly to structure for moderate degrees of cross-bridging and leads to NF aggregation for extensive cross-bridging.

The claims and statistics of this paper haven’t been checked yet.

Run the check — free, no account needed. It reads the open-access text and checks the sources it cites.

A few free checks a day · papers already verified open instantly · results are public

Integrity signals

Registry

Crossref · 10.1016/s0006-3495(02)75581-1

Cites

Statistics

Claims the paper makes

The claims and statistics of this paper haven’t been checked yet.

Run the check — free, no account needed. It reads the open-access text and checks the sources it cites.

A few free checks a day · papers already verified open instantly · results are public

Claims other papers make about this one

Each is checked against this paper’s own text: does it say what the citing paper says it does?

  • Hyperphosphorylation of the tail domains would increase the inter-NF distances to expand the NF domain in axons, giving higher pressure to the MT domain.

    “Hyperphosphorylation of the tail domains would increase the inter-NF distances to expand the NF domain in axons (Kumar et al., 2002;Kanungo et al., 2011), giving higher pressure to the MT domain.”

    From Regulation of Mitochondrial Transport and Inter-Microtubule Spacing by Tau Phosphorylation at the Sites Hyperphosphorylated in Alzheimer's Disease (2012) · cites this paper as Kumar et al., 2002

    The Discussion reports that increased sidearm phosphorylation expands the sidearm brush and regulates spacing between neurofilaments. It does not establish that this expands a distinct NF domain in the axon. The subsequent suggestion of higher pressure on the MT domain is not addressed by the paper and appears to be the citing authors’ inference. (LLM, conf=0.84)

    Experimental — accuracy not yet measured

Self-check

Percentages, sums and reported differences re-computed from the paper’s own numbers.

The self-check needs the paper’s full text.

Cites

No references could be resolved yet.

Research works printed but not linked: 7

  1. Allen, M. P., and D. J. Tildseley. 1987. Computer Simulation of Liquids. Oxford Science Publications, Oxford, U.K.
  2. Hummer, G., S. Garde, A. E. Garcia, A. Pohorille, and L. R. Pratt. 1996. An information theory model of hydrophobic interactions. Proc. Natl. Acad. Sci. U.S.A. 93:8951-8955.
  3. Israelachvili, J. N. 1992. Intermolecular and Surface Forces. Academic Press, New York.
  4. Leapman, R. D., P. E. Gallant, T. S. Reese, and S. B. Andrews. 1997. Phosphorylation and subunit organization of axonal neurofilaments determined by scanning transmission electron microscopy. Proc. Natl. Acad. Sci. U.S.A. 94:7820-7824.
  5. Lee, V. M. Y., L. Otvos, M. J. Carden, M. Hollosi, B. Dietzschold, and R. A. Lazzarini. 1988. Identification of the major multiphosphorylation site in mammalian neurofilaments. Proc. Natl. Acad. Sci. U.S.A. 85: 1998-2002.
  6. Pearson, L. T., S. I. Chan, B. A. Lewis, and D. M. Engelman. 1983. Pair distribution-functions of bacteriorhodopsin and rhodopsin in model bilayers. Biophys. J. 43:167-174.
  7. Povlishock, J. T., and C. W. Christman. 1995. The pathobiology of traumatically induced axonal injury in animals and humans-a review of current thoughts. J. Neurotrauma. 12:555-564.

Cited by

Sorted by citations

Authors
Kumar, S., Yin, X., Trapp, B. D., Hoh, J. H., & Paulaitis, M. E.
Affiliations
  • Johns Hopkins University (US)
  • Cleveland Clinic (US)
Corresponding author
Paulaitis, Michael E.
Venue
Biophysical Journal
Publisher
Elsevier BV
Published
2002-05
Volume
82
Issue
5
Pages
2360-2372
ISSN
0006-3495 (ISSN-L)
OpenAlex
W2108698605
Cited by
89
References
0
Citations by year
2026: 3 · 2025: 4 · 2024: 2 · 2023: 2 · 2022: 3 · 2021: 1 · 2020: 3 · 2019: 1 · 2018: 7 · 2017: 1 · 2016: 4 · 2015: 4 · 2014: 3 · 2013: 1 · 2012: 6
FWCI
1.47
Type
journal article
Language
en
Open access
Locations
  • Biophysical Journal (publishedVersion)
  • PubMed Central (publishedVersion)
  • PubMed (publishedVersion)
Funders
National Institute of Neurological Disorders and Stroke (NS 38186)
Topics
  • Life Sciences › Biochemistry, Genetics and Molecular Biology › Cell Biology › Skin and Cellular Biology Research
  • Life Sciences › Biochemistry, Genetics and Molecular Biology › Cell Biology › Cellular Mechanics and Interactions
  • Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › Protein Structure and Dynamics
Keywords
neurofilaments, axons, polymer brushes, steric exclusion, radial distribution function, telechelic polymers, polyelectrolyte chains, interfilament spacing, Monte Carlo simulation
MeSH terms
Action Potentials, Amino Acid Sequence, Animals, Axons, Computer Simulation, Intermediate Filaments, Microscopy, Electron, Models, Neurological, Molecular Sequence Data, Monte Carlo Method, Neurofilament Proteins

About these checks

Registry, retraction, Cites and statistics results are computed, not judged, with one exception: a printed reference that no index lists is read once by a model before it counts as a citation error. Claims are extracted by a model and kept only when their quote appears verbatim in the text; each cited source is then checked, with a model’s help, for whether it says what the claim relies on. Those verdicts can be wrong — read the claim’s quote and the cited source before relying on one.

Statistics and arithmetic are recomputed, not judged.

Confidence bands are shown only for fields calibrated on our annotated test set. None is calibrated yet, so no band is shown.

What counts as a claim ›How we measure confidence ›How we check this ›

Are you an author, or do you see a problem with this page? Request a review