An unknown phanerozoic driver of brachiopod extinction rates unveiled by multivariate linear stochastic differential equations
Abstract
Whether the evolutionary dynamics of one group of organisms influence that of another group of organisms over the vast timescale of the geological record is a difficult question to tackle. This is not least because multiple factors can influence or mask the effects of potential driving forces on evolutionary dynamics of the focal group. Here, we show how an approach amenable to causality inference for time series, linear stochastic differential equations (SDEs), can be used in a multivariate fashion to shed light on driving forces of diversification dynamics across the Phanerozoic. Using a new, enhanced stepwise search algorithm, we searched through hundreds of models to converge on a model that best describes the dynamic relationships that drove brachiopod and bivalve diversification rates. Using this multivariate framework, we characterized a slow process (half-life of c. 42 Myr) that drove brachiopod extinction. This slow process has yet to be identified from the geological record. Using our new framework for analyzing multiple linear SDEs, we also corroborate our previous findings that bivalve extinction drove brachiopod origination in the sense that brachiopods tended to diversify at a greater rate when bivalves were removed from the system. It is also very likely that bivalves “self-regulate” in the sense that bivalve extinctions also paved the way for higher bivalve origination rates. Multivariate linear SDEs as we presented them here are likely useful for studying other dynamic systems whose signatures are preserved in the paleontological record.
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Causal reasoning tools have been embraced by computer science, epidemiology and the social sciences, but largely ignored by comparative biologists, with rare exceptions being recent introductions of phylogenetic path analysis and causal models for paleontological time-series.
“These tools have been embraced by fields such as computer science, epidemiology and the social sciences, but largely ignored by comparative biologists [rare exceptions are the recent introductions of phylogenetic path analysis by Hardenberg and Gonzalez-Voyer (2013) and the application of causal models to make inferences from paleontological time-series by Reitan and Liow (2017)].”
From Rethinking phylogenetic comparative methods (2018) · cites this paper as Reitan and Liow (2017)
Cites
Biodiversity tracks temperature over time
Mayhew, P. J., Bell, M. A., Benton, T. G., & McGowan, A. J. (2012) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.1200844109 · Cited by 163 · see citing works
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Rethinking phylogenetic comparative methods
Uyeda, J. C., Zenil-Ferguson, R., & Pennell, M. W. (2018) · Systematic Biology · doi:10.1093/sysbio/syy031 · Cited by 313 · see citing works
- Authors
- Reitan, T., & Liow, L. H.
- Affiliations
- University of Oslo (NO)
- Venue
- Paleobiology
- Publisher
- Cambridge University Press (CUP)
- Published
- 2017-06-28
- Volume
- 43
- Issue
- 4
- Pages
- 537-549
- ISSN
- 0094-8373 (ISSN-L)
- 1938-5331
- OpenAlex
- W2731826432
- Cited by
- 14
- References
- 1
- Citations by year
- 2025: 2 · 2024: 3 · 2023: 1 · 2022: 1 · 2021: 2 · 2019: 2 · 2018: 3
- FWCI
- 0.98
- Type
- journal article
- Language
- en
- Open access
- closed
- Locations
- Paleobiology (publishedVersion)
- BioOne Complete (BioOne) (submittedVersion)
- Funders
- University of Chicago
- Norges Forskningsråd
- Topics
- Physical Sciences › Earth and Planetary Sciences › Paleontology › Evolution and Paleontology Studies
- Physical Sciences › Earth and Planetary Sciences › Paleontology › Paleontology and Stratigraphy of Fossils
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Genetics › Evolution and Genetic Dynamics
- Keywords
- brachiopods, Bivalvia, extinction rates, diversification rates, Phanerozoic, linear stochastic differential equations, causal inference, origination rates, evolutionary dynamics
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