The DOI matches its Crossref record; 1 of the 1 references it cites were found in a registry or an index.
What helminth genomes have taught us about parasite evolution
Open accessAbstract
SUMMARY: The genomes of more than 20 helminths have now been sequenced. Here we perform a meta-analysis of all sequenced genomes of nematodes and Platyhelminthes, and attempt to address the question of what are the defining characteristics of helminth genomes. We find that parasitic worms lack systems for surface antigenic variation, instead maintaining infections using their surfaces as the first line of defence against the host immune system, with several expanded gene families of genes associated with the surface and tegument. Parasite excretory/secretory products evolve rapidly, and proteases even more so, with each parasite exhibiting unique modifications of its protease repertoire. Endoparasitic flatworms show striking losses of metabolic capabilities, not matched by nematodes. All helminths do however exhibit an overall reduction in auxiliary metabolism (biogenesis of co-factors and vitamins). Overall, the prevailing pattern is that there are few commonalities between the genomes of independently evolved parasitic worms, with each parasite having undergone specific adaptations for their particular niche.
Overview
The claims and statistics of this paper haven’t been checked yet.
Run the check — free, no account needed. It reads the open-access text and checks the sources it cites.
Integrity signals
Registry
Cites
Statistics
Verification
Claims the paper makes
The claims and statistics of this paper haven’t been checked yet.
Run the check — free, no account needed. It reads the open-access text and checks the sources it cites.
Claims other papers make about this one
Each is checked against this paper’s own text: does it say what the citing paper says it does?
Each large and complex helminth genome can encode 10,000-50,000 genes, compared to 20,000 in the human genome.
“Each large and complex helminth genome can encode 10,000–50,000 genes (Zarowiecki and Berriman, 2015) (compared to 20,000 in the human genome)”
From Modulation of Host Immunity by Helminths: The Expanding Repertoire of Parasite Effector Molecules (2018) · cites this paper as Zarowiecki and Berriman, 2015
Self-check
Percentages, sums and reported differences re-computed from the paper’s own numbers.
The self-check needs the paper’s full text.
Citations
Cites
Evolutionary Ecology of Parasites: Second Edition
Poulin, R. (2007) · doi:10.1515/9781400840809 · Cited by 1,671
Flagged first, then by citations
Research works printed but not linked: 69
- 10.1534/genetics.112.148809 · DOI
- 10.1038/32160 · DOI
- Reid, 2014, Large, rapidly evolving gene families are at the forefront of host-parasite interactions in Apicomplexa, Parasitology
- 10.1093/nar/gkt953 · DOI
- 10.1080/10635150802429642 · DOI · Paper page
- 10.1371/journal.ppat.1002219 · DOI
- 10.1093/oxfordjournals.molbev.a026334 · DOI
- 10.1038/nri1183 · DOI
- 10.1371/journal.pntd.0001455 · DOI
- 10.1038/ng.3010 · DOI
- 10.1128/IAI.71.2.1008-1010.2003 · DOI
- 10.1016/j.tig.2009.03.006 · DOI
- 10.1111/j.1095-8312.1999.tb01918.x · DOI
- 10.1038/ng.2875 · DOI
- 10.1186/gb-2014-15-3-r43 · DOI
- 10.1186/1471-2164-14-923 · DOI
- 10.1093/gbe/evu078 · DOI
- 10.1042/BST0330986 · DOI
- 10.1007/978-1-62703-646-7_8 · DOI
- 10.1016/S0140-6736(06)68653-4 · DOI · Paper page
- 10.1016/j.gene.2009.05.004 · DOI
- 10.1038/nbt.1482 · DOI
- 10.1093/nar/gkr948 · DOI
- 10.1126/science.1145406 · DOI
- 2013, R: A Language and Environment for Statistical Computing
- 10.1016/j.tig.2010.06.005 · DOI
- 10.1038/nature12031 · DOI
- 10.1016/S1473-3099(06)70521-7 · DOI
- Bird, 2014, Signatures of adaptation to plant parasitism in nematode genomes, Parasitology
- Huang, 2013, The carcinogenic liver fluke, Clonorchis sinensis: new assembly, reannotation and analysis of the genome and characterization of tissue transcriptomes, PLoS One, 8
- 10.1007/978-94-007-0434-3_2 · DOI
- 10.1038/ng.769 · DOI
- 10.1155/2012/541268 · DOI
- 10.1186/gb-2013-14-8-r89 · DOI
- 10.1016/j.molbiopara.2009.04.008 · DOI
- 10.1371/journal.pone.0069618 · DOI
- 10.1038/nature08160 · DOI
- 10.1038/ng.227 · DOI
- 10.4161/worm.19046 · DOI
- 10.1038/ng.1065 · DOI
- 10.1016/0035-9203(84)90129-9 · DOI
- 10.1001/archinte.1974.00320220143020 · DOI
- 10.1038/nature10553 · DOI
- 10.1093/nar/gkm321 · DOI
- 10.1038/ng.2585 · DOI
- 10.3109/10715768709069763 · DOI
- 10.1073/pnas.0805946105 · DOI
- 10.1186/1471-2105-9-518 · DOI
- Zhou, 2009, The Schistosoma japonicum genome reveals features of host-parasite interplay, Nature, 460, 345, 10.1038/nature08140 · DOI
- 10.1038/ng.2757 · DOI
- 10.1186/gb-2013-14-8-r88 · DOI
- Blaxter, 2014, The evolution of parasitism in Nematoda, Parasitology
- 10.3389/fcimb.2012.00072 · DOI
- 10.1111/mmi.12381 · DOI
- 10.1038/75556 · DOI · Paper page
- 10.1016/j.biotechadv.2009.02.005 · DOI
- 10.1016/j.vetpar.2011.07.017 · DOI · Paper page
- 10.1371/journal.pntd.0000319 · DOI
- 10.1016/S0022-2836(05)80360-2 · DOI · Paper page
- 10.1186/1471-2164-9-89 · DOI
- 10.1093/nar/gkm684 · DOI
- 10.1096/fj.12-205096 · DOI
- 10.1371/journal.ppat.1000840 · DOI
- Price, 1980, Evolutionary biology of parasites, Monographs in Population Biology, 15, 1
- 10.1080/106351599260094 · DOI
- 10.1186/gb-2011-12-10-r107 · DOI
- 10.1371/journal.pbio.0000045 · DOI
- 10.1016/j.pt.2011.01.008 · DOI
- 10.1126/science.282.5396.2012 · DOI
Cited by
Sorted by citations
Modulation of Host Immunity by Helminths: The Expanding Repertoire of Parasite Effector Molecules
Maizels, R. M., Smits, H. H., & McSorley, H. J. (2018) · Immunity · doi:10.1016/j.immuni.2018.10.016 · Cited by 435
Metadata
- Authors
- ZAROWIECKI, M., & BERRIMAN, M.
- Affiliations
- Wellcome Sanger Institute (GB)
- Corresponding author
- ZAROWIECKI, MAGDALENA
- Venue
- Parasitology
- Publisher
- Cambridge University Press (CUP)
- Published
- 2014-12-08
- Volume
- 142
- Issue
- S1
- Pages
- S85-S97
- ISSN
- 0031-1820 (ISSN-L)
- 1469-8161
- PMC
- PMC4413821
- OpenAlex
- W2134134620
- Cited by
- 87
- References
- 1
- Citations by year
- 2026: 4 · 2025: 7 · 2024: 3 · 2023: 6 · 2022: 4 · 2021: 10 · 2020: 12 · 2019: 10 · 2018: 9 · 2017: 9 · 2016: 8 · 2015: 5
- FWCI
- 0.90
- Type
- journal article
- Language
- en
- Open access
- hybrid
- doi.org
- Locations
- Parasitology (publishedVersion, cc-by)
- Europe PMC (PubMed Central) (publishedVersion, cc-by)
- PubMed Central (publishedVersion, cc-by)
- PubMed (publishedVersion)
- Research Portal (King's College London) (publishedVersion, cc-by)
- Funders
- Wellcome Trust
- Topics
- Life Sciences › Immunology and Microbiology › Parasitology › Parasites and Host Interactions
- Life Sciences › Immunology and Microbiology › Parasitology › Parasite Biology and Host Interactions
- Life Sciences › Immunology and Microbiology › Parasitology › Helminth infection and control
- Keywords
- parasite evolution, nematodes, Platyhelminthes, tegument, excretory-secretory products, proteolytic enzymes, metabolic adaptation, host immune evasion, gene family expansion
- MeSH terms
- Adaptation, Physiological, Animals, Biological Evolution, Helminths, Immune System, Nematoda, Parasites, Platyhelminths, Genome, Helminth, Transcriptome
About these checks
Registry, retraction, Cites and statistics results are computed, not judged, with one exception: a printed reference that no index lists is read once by a model before it counts as a citation error. Claims are extracted by a model and kept only when their quote appears verbatim in the text; each cited source is then checked, with a model’s help, for whether it says what the claim relies on. Those verdicts can be wrong — read the claim’s quote and the cited source before relying on one.
Statistics and arithmetic are recomputed, not judged.
Confidence bands are shown only for fields calibrated on our annotated test set. None is calibrated yet, so no band is shown.
What counts as a claim ›How we measure confidence ›How we check this ›
Are you an author, or do you see a problem with this page? Request a review