Proteomics-Based Methods for Discovery, Quantification, and Validation of Protein–Protein Interactions

Miteva, Yana V., Budayeva, Hanna G., Cristea, Ileana M.·2013·Analytical Chemistry

Cites (245)

Items 201–245 of 245

  1. Native Capillary Isoelectric Focusing for the Separation of Protein Complex Isoforms and Subcomplexes
    Bryan R. Fonslow, Seong Anthony Woo Kang, Daniel R. Gestaut, Beth Graczyk, Trisha Nell Davis, David M. Sabatini, John R. Yates · 2010 · Analytical Chemistry
  2. Transcription Factor IIS Cooperates with the E3 Ligase UBR5 to Ubiquitinate the CDK9 Subunit of the Positive Transcription Elongation Factor B
    Marilena Cojocaru, Annie Bouchard, Philippe Cloutier · 2010 · Journal of Biological Chemistry
  3. Analysis of Stable and Transient Protein–Protein Interactions
    Stephanie D. Byrum, Sherri K. Smart, Signe K. Larson, Alan J. Tackett · 2011 · Methods in molecular biology
  4. Aurora B-dependent Regulation of Class IIa Histone Deacetylases by Mitotic Nuclear Localization Signal Phosphorylation
    Amanda J. Guise, Todd M. Greco, Irene Y. Zhang, Fang Yu, Ileana M. Cristea · 2012 · Molecular & Cellular Proteomics
  5. Resolving the composition of protein complexes using a MALDI LTQ orbitrap
    Yang Luo, Tuo Li, Fang Yu, Tal Kramer, Ileana M. Cristea · 2009 · Journal of the American Society for Mass Spectrometry
  6. Isotope Signatures Allow Identification of Chemically Cross-Linked Peptides by Mass Spectrometry: A Novel Method to Determine Interresidue Distances in Protein Structures through Cross-Linking
    Alex Zelter, Michael R. Hoopmann, Robert McCoy Vernon, David A. Baker, Michael J. MacCoss, Trisha Nell Davis · 2010 · Journal of Proteome Research
  7. Recombineering BAC transgenes for protein tagging
    Giovanni Ciotta, Helmut Hofemeister, Marcello Maresca, Jun Fu, Mihail Sarov, Konstantinos Anastassiadis, Adrian Francis Stewart · 2010 · Methods
  8. Interactive Three-Dimensional Visualization and Contextual Analysis of Protein Interaction Networks
    Edwin C. Ho, Richard Webber, Marc Ronald Wilkins · 2007 · Journal of Proteome Research
  9. A Docking Model Based on Mass Spectrometric and Biochemical Data Describes Phage Packaging Motor Incorporation
    Fu, Chi-yu, Uetrecht, Charlotte, Kang, Sebyung, Morais, Marc C., Heck, Albert J.R., Walter, Mark R., Prevelige, Peter E. · 2010 · Molecular & Cellular Proteomics
  10. Interactome study suggests multiple cellular functions of hepatoma-derived growth factor (HDGF)
    Jian Zhao, Hongxiu Yu, Ling Lin, Jun Tu, Lili Cai, Yanmei Chen, Fan Zhong, Chengzhao� Lin, Fuchu He, Pengyuan Yang · 2011 · Journal of Proteomics
  11. Isolation of the Silicatein-α Interactor Silintaphin-2 by a Novel Solid-Phase Pull-Down Assay
    Matthias Wiens, Heinz Christoph Schröder, Xiaohong Wang, Thorben Link, Dominik Steindorf, Wernér E.G. Müller · 2011 · Biochemistry
  12. Mapping the local protein interactome of the NuA3 histone acetyltransferase
    Sherri K. Smart, Samuel G. Mackintosh, Ricky D. Edmondson, Sean D. Taverna, Alan J. Tackett · 2009 · Protein Science
  13. Protein Solubilization: Attend to the Choice of Lysis Buffer
    Mandy Peach, Noelle Marsh, Daniel J. MacPhee · 2012 · Methods in molecular biology
  14. Examining the Complexity of Human RNA Polymerase Complexes using HaloTag Technology Coupled to Label Free Quantitative Proteomics
    Danette L. Daniels, Jacqui Méndez, Amber L. Mosley · 2011 · Journal of Proteome Research
  15. Hepatitis B Virus Encoded X Protein Suppresses Apoptosis by Inhibition of the Caspase-Independent Pathway
    Haiying Liu, Yanzhi Yuan, Hongyan Guo, Keith Richard Mitchelson, Ke Zhang, Lan Xie, Wenyan Qin, Ying Lu, Jian Wang, Yong Sheng Guo et al. · 2012 · Journal of Proteome Research
  16. Protein Interactions of Phosphatase and Tensin Homologue (PTEN) and Its Cancer-associated G20E Mutant Compared by Using Stable Isotope Labeling by Amino Acids in Cell Culture-based Parallel Affinity Purification
    Jayantha Gunaratne, Mei Xian Goh, Hannah Lee Foon Swa, Fen Yee Lee, Emma Sanford, Loke Meng Wong, Kelly A. Hogue, Walter P. Blackstock, Koichi Okumura · 2011 · Journal of Biological Chemistry
  17. GPCRs, G-proteins, effectors and their interactions: human-gpDB, a database employing visualization tools and data integration techniques
    Venkata Satagopam, Margarita C. Theodoropoulou, C. K. Stampolakis, Georgios A. Pavlopoulos, Nikolaos C. Papandreou, Pantelis G. Bagos, Reinhard Schneider, Stavros J. Hamodrakas · 2010 · Database
  18. CrossSearch, a User-friendly Search Engine for Detecting Chemically Cross-linked Peptides in Conjugated Proteins
    Owen W. Nadeau, Gerald J. Wyckoff, Justin E. Paschall, Antonio Artigues, Jessica M. Sage, María T. Villar, Gerald M. Carlson · 2008 · Molecular & Cellular Proteomics
  19. Mapping spatial proximities of sulfhydryl groups in proteins using a fluorogenic cross-linker and mass spectrometry
    Andrea Sinz, Kuan Wang · 2004 · Analytical Biochemistry
  20. Isolation and characterization of plant protein complexes by mass spectrometry
    Delphine Pflieger, Jean Bigeard, Heribert Hirt A · 2010 · PROTEOMICS
  21. Multiple Tandem Epitope Tagging for Enhanced Detection of Protein Expressed in Mammalian Cells
    Lin Zhang, Ron Hernan, Bill Brizzard · 2001 · Molecular Biotechnology
  22. Pathway Palette: A rich internet application for peptide‐, protein‐ and network‐oriented analysis of MS data
    Manor Askenazi, Shaojuan Li, Saurav Singh, Jarrod A. Marto · 2010 · PROTEOMICS
  23. Purification and Characterization of an Active N -Acetylglucosaminyltransferase Enzyme Complex from Streptococci
    Ren‐Chin Wu, Meixian Zhou, Hui Wu · 2010 · Applied and Environmental Microbiology
  24. Affinity Isolation and I-DIRT Mass Spectrometric Analysis of the Escherichia coli O157:H7 Sakai RNA Polymerase Complex
    David J. Lee, Stephen J. W. Busby, Lars F. Westblade, Brian T. Chait · 2007 · Journal of Bacteriology
  25. Mapping spatial proximities of sulfhydryl groups in proteins using a fluorogenic cross-linker and mass spectrometry
    Andrea Sinz, K WANG · 2004 · Analytical Biochemistry
  26. Immunoisolation of Protein Complexes from Xenopus
    Frank L. Conlon, Yana Miteva, Erin Kaltenbrun, Lauren K. Wasson, Todd M. Greco, Ileana M. Cristea · 2012 · Methods in molecular biology
  27. Assessing the Components of the eIF3 Complex and their Phosphorylation Status
    Adam R. Farley, David W. Powell, Connie M. Weaver, Jennifer L. Jennings, Andrew J. Link · 2011 · Journal of Proteome Research
  28. A Method for the Rapid and Efficient Elution of Native Affinity-Purified Protein A Tagged Complexes
    Caterina Strambio‐De‐Castillia, Jaclyn E. Tetenbaum-Novatt, Brian S. Imai, Brian T. Chait, Michael P. Rout · 2005 · Journal of Proteome Research
  29. Four‐dimensional visualisation and analysis of protein–protein interaction networks
    Apurv Goel, Simone S. Li, Marc Ronald Wilkins · 2011 · PROTEOMICS
  30. QUICK identification and SPR validation of signal transducers and activators of transcription 3 (Stat3) interacting proteins
    Peng Zheng, Qiu Zhong, Qian Xiong · 2011 · Journal of Proteomics
  31. Co-Immunoprecipitation of Protein Complexes
    Peter Yaciuk · 2007 · Methods in molecular medicine
  32. Epitope Tagging of Endogenous Proteins for Genome-Wide Chromatin Immunoprecipitation Analysis
    Zhenghe Wang · 2009 · Methods in molecular biology
  33. Rapid Isolation and Identification of Bacteriophage T4-Encoded Modifications of Escherichia coli RNA Polymerase: A Generic Method to Study Bacteriophage/Host Interactions
    Lars F. Westblade, Минахин Леонид Станиславович, Konstantin D. Kuznedelov, Alan J. Tackett, Emmanuel J. Chang, Rachel Anne Mooney, Irina O. Vvedenskaya, Qing Jun Wang, David Fenyö, Michael P. Rout et al. · 2008 · Journal of Proteome Research
  34. Bimolecular Affinity Purification (BAP): Tandem Affinity Purification Using Two Protein Baits: Figure 1.
    Gabriel N. Maine, Nathan Gluck, Iram Waris Zaidi · 2009 · Cold Spring Harbor Protocols
  35. Probing the transient interaction between the small heat-shock protein Hsp21 and a model substrate protein using crosslinking mass spectrometry
    Wietske Lambert, Gudrun Rutsdottir, Rasha Mohamed Hussein, Katja Bernfur, Sven Kjellström, Cecilia Sundby Emanuelsson · 2012 · Cell Stress and Chaperones
  36. Identification of Mammalian Protein Complexes by Lentiviral-Based Affinity Purification and Mass Spectrometry
    Zuyao Ni, Jonathan B. Olsen, Andrew Emili · 2011 · Methods in molecular biology
  37. Using Stable Isotope Tagging and Mass Spectrometry to Characterize Protein Complexes and to Detect Changes in Their Composition
    Jeffrey A. Ranish, Marjorie Brand, Ruedi Aebersold · 2007 · Methods in molecular biology
  38. Integrating Lys-N proteolysis and N-terminal guanidination for improved fragmentation and relative quantification of singly-charged ions
    Valerie J. Carabetta, Tuo Li, Anisha Shakya, Todd M. Greco, Ileana M. Cristea · 2010 · Journal of the American Society for Mass Spectrometry
  39. Fluorescent Protein Specific Nanotraps to Study Protein–Protein Interactions and Histone-Tail Peptide Binding
    Garwin Pichler, Heinrich Leonhardt, Ulrich Rothbauer · 2012 · Methods in molecular biology
  40. New insights into the functions and localization of nuclear CCT protein complex in K 562 leukemia cells
    Rui Huang, Miao Yu, Chang‐Yan Li, Yi‐Qun Zhan, Wang‐Xiang Xu, Feifei Xu, Chang‐Hui Ge, Wei Li, Xiaoming Yang · 2012 · PROTEOMICS - CLINICAL APPLICATIONS
  41. Preparation of Multiprotein Complexes from Arabidopsis Chloroplasts Using Tandem Affinity Purification
    Charles Andrés, Birgit Agne, Félix Kessler · 2011 · Methods in molecular biology
  42. A novel calmodulin–β-PIX interaction and its implication in receptor tyrosine kinase regulation
    Vinay K. Singh, Kim A. Munro, Zongchao Jia · 2012 · Cellular Signalling
  43. Mass Spectrometry Characterization of Multiprotein Complexes: Figure 1.
    Carol V. Robinson · 2009 · Cold Spring Harbor Protocols
  44. Navigating the Deubiquitinating Proteome with a CompPASS
    Peter K. Jackson · 2009 · Cell
  45. MSMEG_2731, an Uncharacterized Nucleic Acid Binding Protein from Mycobacterium smegmatis, Physically Interacts with RPS1
    Mingzhang Yang, Yuanyuan Chen, Ying Zhou · 2012 · PLoS ONE