Proteomics-Based Methods for Discovery, Quantification, and Validation of Protein–Protein Interactions
Miteva, Yana V., Budayeva, Hanna G., Cristea, Ileana M.·2013·Analytical Chemistry
Cites (245)
Items 201–245 of 245
- Native Capillary Isoelectric Focusing for the Separation of Protein Complex Isoforms and SubcomplexesBryan R. Fonslow, Seong Anthony Woo Kang, Daniel R. Gestaut, Beth Graczyk, Trisha Nell Davis, David M. Sabatini, John R. Yates · 2010 · Analytical Chemistry
- Transcription Factor IIS Cooperates with the E3 Ligase UBR5 to Ubiquitinate the CDK9 Subunit of the Positive Transcription Elongation Factor BMarilena Cojocaru, Annie Bouchard, Philippe Cloutier · 2010 · Journal of Biological Chemistry
- Analysis of Stable and Transient Protein–Protein InteractionsStephanie D. Byrum, Sherri K. Smart, Signe K. Larson, Alan J. Tackett · 2011 · Methods in molecular biology
- Aurora B-dependent Regulation of Class IIa Histone Deacetylases by Mitotic Nuclear Localization Signal PhosphorylationAmanda J. Guise, Todd M. Greco, Irene Y. Zhang, Fang Yu, Ileana M. Cristea · 2012 · Molecular & Cellular Proteomics
- Resolving the composition of protein complexes using a MALDI LTQ orbitrapYang Luo, Tuo Li, Fang Yu, Tal Kramer, Ileana M. Cristea · 2009 · Journal of the American Society for Mass Spectrometry
- Isotope Signatures Allow Identification of Chemically Cross-Linked Peptides by Mass Spectrometry: A Novel Method to Determine Interresidue Distances in Protein Structures through Cross-LinkingAlex Zelter, Michael R. Hoopmann, Robert McCoy Vernon, David A. Baker, Michael J. MacCoss, Trisha Nell Davis · 2010 · Journal of Proteome Research
- Recombineering BAC transgenes for protein taggingGiovanni Ciotta, Helmut Hofemeister, Marcello Maresca, Jun Fu, Mihail Sarov, Konstantinos Anastassiadis, Adrian Francis Stewart · 2010 · Methods
- Interactive Three-Dimensional Visualization and Contextual Analysis of Protein Interaction NetworksEdwin C. Ho, Richard Webber, Marc Ronald Wilkins · 2007 · Journal of Proteome Research
- A Docking Model Based on Mass Spectrometric and Biochemical Data Describes Phage Packaging Motor IncorporationFu, Chi-yu, Uetrecht, Charlotte, Kang, Sebyung, Morais, Marc C., Heck, Albert J.R., Walter, Mark R., Prevelige, Peter E. · 2010 · Molecular & Cellular Proteomics
- Interactome study suggests multiple cellular functions of hepatoma-derived growth factor (HDGF)Jian Zhao, Hongxiu Yu, Ling Lin, Jun Tu, Lili Cai, Yanmei Chen, Fan Zhong, Chengzhao� Lin, Fuchu He, Pengyuan Yang · 2011 · Journal of Proteomics
- Isolation of the Silicatein-α Interactor Silintaphin-2 by a Novel Solid-Phase Pull-Down AssayMatthias Wiens, Heinz Christoph Schröder, Xiaohong Wang, Thorben Link, Dominik Steindorf, Wernér E.G. Müller · 2011 · Biochemistry
- Mapping the local protein interactome of the NuA3 histone acetyltransferaseSherri K. Smart, Samuel G. Mackintosh, Ricky D. Edmondson, Sean D. Taverna, Alan J. Tackett · 2009 · Protein Science
- Protein Solubilization: Attend to the Choice of Lysis BufferMandy Peach, Noelle Marsh, Daniel J. MacPhee · 2012 · Methods in molecular biology
- Examining the Complexity of Human RNA Polymerase Complexes using HaloTag Technology Coupled to Label Free Quantitative ProteomicsDanette L. Daniels, Jacqui Méndez, Amber L. Mosley · 2011 · Journal of Proteome Research
- Hepatitis B Virus Encoded X Protein Suppresses Apoptosis by Inhibition of the Caspase-Independent PathwayHaiying Liu, Yanzhi Yuan, Hongyan Guo, Keith Richard Mitchelson, Ke Zhang, Lan Xie, Wenyan Qin, Ying Lu, Jian Wang, Yong Sheng Guo et al. · 2012 · Journal of Proteome Research
- Protein Interactions of Phosphatase and Tensin Homologue (PTEN) and Its Cancer-associated G20E Mutant Compared by Using Stable Isotope Labeling by Amino Acids in Cell Culture-based Parallel Affinity PurificationJayantha Gunaratne, Mei Xian Goh, Hannah Lee Foon Swa, Fen Yee Lee, Emma Sanford, Loke Meng Wong, Kelly A. Hogue, Walter P. Blackstock, Koichi Okumura · 2011 · Journal of Biological Chemistry
- GPCRs, G-proteins, effectors and their interactions: human-gpDB, a database employing visualization tools and data integration techniquesVenkata Satagopam, Margarita C. Theodoropoulou, C. K. Stampolakis, Georgios A. Pavlopoulos, Nikolaos C. Papandreou, Pantelis G. Bagos, Reinhard Schneider, Stavros J. Hamodrakas · 2010 · Database
- CrossSearch, a User-friendly Search Engine for Detecting Chemically Cross-linked Peptides in Conjugated ProteinsOwen W. Nadeau, Gerald J. Wyckoff, Justin E. Paschall, Antonio Artigues, Jessica M. Sage, María T. Villar, Gerald M. Carlson · 2008 · Molecular & Cellular Proteomics
- Mapping spatial proximities of sulfhydryl groups in proteins using a fluorogenic cross-linker and mass spectrometryAndrea Sinz, Kuan Wang · 2004 · Analytical Biochemistry
- Isolation and characterization of plant protein complexes by mass spectrometryDelphine Pflieger, Jean Bigeard, Heribert Hirt A · 2010 · PROTEOMICS
- Multiple Tandem Epitope Tagging for Enhanced Detection of Protein Expressed in Mammalian CellsLin Zhang, Ron Hernan, Bill Brizzard · 2001 · Molecular Biotechnology
- Pathway Palette: A rich internet application for peptide‐, protein‐ and network‐oriented analysis of MS dataManor Askenazi, Shaojuan Li, Saurav Singh, Jarrod A. Marto · 2010 · PROTEOMICS
- Purification and Characterization of an Active N -Acetylglucosaminyltransferase Enzyme Complex from StreptococciRen‐Chin Wu, Meixian Zhou, Hui Wu · 2010 · Applied and Environmental Microbiology
- Affinity Isolation and I-DIRT Mass Spectrometric Analysis of the Escherichia coli O157:H7 Sakai RNA Polymerase ComplexDavid J. Lee, Stephen J. W. Busby, Lars F. Westblade, Brian T. Chait · 2007 · Journal of Bacteriology
- Mapping spatial proximities of sulfhydryl groups in proteins using a fluorogenic cross-linker and mass spectrometryAndrea Sinz, K WANG · 2004 · Analytical Biochemistry
- Immunoisolation of Protein Complexes from XenopusFrank L. Conlon, Yana Miteva, Erin Kaltenbrun, Lauren K. Wasson, Todd M. Greco, Ileana M. Cristea · 2012 · Methods in molecular biology
- Assessing the Components of the eIF3 Complex and their Phosphorylation StatusAdam R. Farley, David W. Powell, Connie M. Weaver, Jennifer L. Jennings, Andrew J. Link · 2011 · Journal of Proteome Research
- A Method for the Rapid and Efficient Elution of Native Affinity-Purified Protein A Tagged ComplexesCaterina Strambio‐De‐Castillia, Jaclyn E. Tetenbaum-Novatt, Brian S. Imai, Brian T. Chait, Michael P. Rout · 2005 · Journal of Proteome Research
- Four‐dimensional visualisation and analysis of protein–protein interaction networksApurv Goel, Simone S. Li, Marc Ronald Wilkins · 2011 · PROTEOMICS
- QUICK identification and SPR validation of signal transducers and activators of transcription 3 (Stat3) interacting proteinsPeng Zheng, Qiu Zhong, Qian Xiong · 2011 · Journal of Proteomics
- Co-Immunoprecipitation of Protein ComplexesPeter Yaciuk · 2007 · Methods in molecular medicine
- Epitope Tagging of Endogenous Proteins for Genome-Wide Chromatin Immunoprecipitation AnalysisZhenghe Wang · 2009 · Methods in molecular biology
- Rapid Isolation and Identification of Bacteriophage T4-Encoded Modifications of Escherichia coli RNA Polymerase: A Generic Method to Study Bacteriophage/Host InteractionsLars F. Westblade, Минахин Леонид Станиславович, Konstantin D. Kuznedelov, Alan J. Tackett, Emmanuel J. Chang, Rachel Anne Mooney, Irina O. Vvedenskaya, Qing Jun Wang, David Fenyö, Michael P. Rout et al. · 2008 · Journal of Proteome Research
- Bimolecular Affinity Purification (BAP): Tandem Affinity Purification Using Two Protein Baits: Figure 1.Gabriel N. Maine, Nathan Gluck, Iram Waris Zaidi · 2009 · Cold Spring Harbor Protocols
- Probing the transient interaction between the small heat-shock protein Hsp21 and a model substrate protein using crosslinking mass spectrometryWietske Lambert, Gudrun Rutsdottir, Rasha Mohamed Hussein, Katja Bernfur, Sven Kjellström, Cecilia Sundby Emanuelsson · 2012 · Cell Stress and Chaperones
- Identification of Mammalian Protein Complexes by Lentiviral-Based Affinity Purification and Mass SpectrometryZuyao Ni, Jonathan B. Olsen, Andrew Emili · 2011 · Methods in molecular biology
- Using Stable Isotope Tagging and Mass Spectrometry to Characterize Protein Complexes and to Detect Changes in Their CompositionJeffrey A. Ranish, Marjorie Brand, Ruedi Aebersold · 2007 · Methods in molecular biology
- Integrating Lys-N proteolysis and N-terminal guanidination for improved fragmentation and relative quantification of singly-charged ionsValerie J. Carabetta, Tuo Li, Anisha Shakya, Todd M. Greco, Ileana M. Cristea · 2010 · Journal of the American Society for Mass Spectrometry
- Fluorescent Protein Specific Nanotraps to Study Protein–Protein Interactions and Histone-Tail Peptide BindingGarwin Pichler, Heinrich Leonhardt, Ulrich Rothbauer · 2012 · Methods in molecular biology
- New insights into the functions and localization of nuclear CCT protein complex in K 562 leukemia cellsRui Huang, Miao Yu, Chang‐Yan Li, Yi‐Qun Zhan, Wang‐Xiang Xu, Feifei Xu, Chang‐Hui Ge, Wei Li, Xiaoming Yang · 2012 · PROTEOMICS - CLINICAL APPLICATIONS
- Preparation of Multiprotein Complexes from Arabidopsis Chloroplasts Using Tandem Affinity PurificationCharles Andrés, Birgit Agne, Félix Kessler · 2011 · Methods in molecular biology
- A novel calmodulin–β-PIX interaction and its implication in receptor tyrosine kinase regulationVinay K. Singh, Kim A. Munro, Zongchao Jia · 2012 · Cellular Signalling
- Mass Spectrometry Characterization of Multiprotein Complexes: Figure 1.Carol V. Robinson · 2009 · Cold Spring Harbor Protocols
- Navigating the Deubiquitinating Proteome with a CompPASSPeter K. Jackson · 2009 · Cell
- MSMEG_2731, an Uncharacterized Nucleic Acid Binding Protein from Mycobacterium smegmatis, Physically Interacts with RPS1Mingzhang Yang, Yuanyuan Chen, Ying Zhou · 2012 · PLoS ONE