The DOI matches its Crossref record; 64 of the 64 references it cites were found in a registry or an index.
Biodegradation: Updating the Concepts of Control for Microbial Cleanup in Contaminated Aquifers
Open accessAbstract
Biodegradation is one of the most favored and sustainable means of removing organic pollutants from contaminated aquifers but the major steering factors are still surprisingly poorly understood. Growing evidence questions some of the established concepts for control of biodegradation. Here, we critically discuss classical concepts such as the thermodynamic redox zonation, or the use of steady state transport scenarios for assessing biodegradation rates. Furthermore, we discuss if the absence of specific degrader populations can explain poor biodegradation. We propose updated perspectives on the controls of biodegradation in contaminant plumes. These include the plume fringe concept, transport limitations, and transient conditions as currently underestimated processes affecting biodegradation.
Overview
The claims and statistics of this paper haven’t been checked yet.
Run the check — free, no account needed. It reads the open-access text and checks the sources it cites.
Integrity signals
Registry
Cites
Statistics
Verification
Claims the paper makes
The claims and statistics of this paper haven’t been checked yet.
Run the check — free, no account needed. It reads the open-access text and checks the sources it cites.
Self-check
Percentages, sums and reported differences re-computed from the paper’s own numbers.
The self-check needs the paper’s full text.
Citations
Cites
Biology of anaerobic microorganisms
(1989) · Choice Reviews Online · doi:10.5860/choice.26-3877 · Cited by 2,252
Water Analysis: Emerging Contaminants and Current Issues
Richardson, S. D., & Ternes, T. A. (2014) · Analytical Chemistry · doi:10.1021/ac500508t · Cited by 2,144
Global Water Pollution and Human Health
Schwarzenbach, R. P., Egli, T., Hofstetter, T. B., von Gunten, U., & Wehrli, B. (2010) · Annual Review of Environment and Resources · doi:10.1146/annurev-environ-100809-125342 · Cited by 2,076
Electron transfer in syntrophic communities of anaerobic bacteria and archaea
Stams, A. J. M., & Plugge, C. M. (2009) · Nature Reviews Microbiology · doi:10.1038/nrmicro2166 · Cited by 1,441
BACTERIAL GROWTH EFFICIENCY IN NATURAL AQUATIC SYSTEMS
del Giorgio, P. A., & Cole, J. J. (1998) · Annual Review of Ecology and Systematics · doi:10.1146/annurev.ecolsys.29.1.503 · Cited by 1,355
Carbon use efficiency of microbial communities: stoichiometry, methodology and modelling
Sinsabaugh, R. L., Manzoni, S., Moorhead, D. L., & Richter, A. (2013) · Ecology Letters · doi:10.1111/ele.12113 · Cited by 991
Tyagi, M., da Fonseca, M. M. R., & de Carvalho, C. C. C. R. (2011) · Biodegradation · doi:10.1007/s10532-010-9394-4 · Cited by 845
Natural Attenuation of Fuels and Chlorinated Solvents in the Subsurface
Wiedemeier, T. H., Rifai, H. S., Newell, C. J., & Wilson, J. T. (1999) · Wiley eBooks · doi:10.1002/9780470172964 · Cited by 795
Dojka, M. A., Hugenholtz, P., Haack, S. K., & Pace, N. R. (1998) · Applied and Environmental Microbiology · doi:10.1128/aem.64.10.3869-3877.1998 · Cited by 762
Kovárová-Kovar, K., & Egli, T. (1998) · Microbiology and Molecular Biology Reviews · doi:10.1128/mmbr.62.3.646-666.1998 · Cited by 737
Microbial biodiversity in groundwater ecosystems
GRIEBLER, C., & LUEDERS, T. (2009) · Freshwater Biology · doi:10.1111/j.1365-2427.2008.02013.x · Cited by 615
Self-citationCleaning up with genomics: applying molecular biology to bioremediation
Lovley, D. R. (2003) · Nature Reviews Microbiology · doi:10.1038/nrmicro731 · Cited by 615
Water Analysis: Emerging Contaminants and Current Issues
Richardson, S. D., & Ternes, T. A. (2011) · Analytical Chemistry · doi:10.1021/ac200915r · Cited by 585
Microbial degradation of polyfluoroalkyl chemicals in the environment: A review
Liu, J., & Mejia Avendaño, S. (2013) · Environment International · doi:10.1016/j.envint.2013.08.022 · Cited by 525
Characterization of redox conditions in groundwater contaminant plumes
Christensen, T. H., Bjerg, P. L., Banwart, S. A., Jakobsen, R., Heron, G., & Albrechtsen, H.-J. (2000) · Journal of Contaminant Hydrology · doi:10.1016/s0169-7722(00)00109-1 · Cited by 518
Self-citationAchtnich, C., Bak, F., & Conrad, R. (1995) · Biology and Fertility of Soils · doi:10.1007/bf00336349 · Cited by 514
Mass Transfer Limitation of Biotransformation: Quantifying Bioavailability
Bosma, T. N. P., Middeldorp, P. J. M., Schraa, G., & Zehnder, A. J. B. (1997) · Environmental Science & Technology · doi:10.1021/es960383u · Cited by 508
Major, D. W., McMaster, M. L., Cox, E. E., Edwards, E. A., Dworatzek, S. M., Hendrickson, E. R., Starr, M. G., Payne, J. A., & Buonamici, L. W. (2002) · Environmental Science & Technology · doi:10.1021/es0255711 · Cited by 506
Attenuation of landfill leachate pollutants in aquifers
Christensen, T. H., Kjeldsen, P., Albrechtsen, H., Heron, G., Nielsen, P. H., Bjerg, P. L., & Holm, P. E. (1994) · Critical Reviews in Environmental Science and Technology · doi:10.1080/10643389409388463 · Cited by 478
Self-citationHendrickson, E. R., Payne, J. A., Young, R. M., Starr, M. G., Perry, M. P., Fahnestock, S., Ellis, D. E., & Ebersole, R. C. (2002) · Applied and Environmental Microbiology · doi:10.1128/aem.68.2.485-495.2002 · Cited by 453
Winter, C., Bouvier, T., Weinbauer, M. G., & Thingstad, T. F. (2010) · Microbiology and Molecular Biology Reviews · doi:10.1128/mmbr.00034-09 · Cited by 435
Benner, J., Helbling, D. E., Kohler, H.-P. E., Wittebol, J., Kaiser, E., Prasse, C., Ternes, T. A., Albers, C. N., Aamand, J., Horemans, B., et al. (2013) · Water Research · doi:10.1016/j.watres.2013.07.015 · Cited by 346
Self-citationAnaerobic Biodegradation of Aromatic Hydrocarbons: Pathways and Prospects
Foght, J. (2008) · Microbial Physiology · doi:10.1159/000121324 · Cited by 324
Synergistic interactions in the microbial world
Schink, B. (2002) · Antonie van Leeuwenhoek · doi:10.1023/a:1020579004534 · Cited by 294
How to live at very low substrate concentration
Egli, T. (2010) · Water Research · doi:10.1016/j.watres.2010.07.023 · Cited by 249
Dominance of sulfur-fueled iron oxide reduction in low-sulfate freshwater sediments
Hansel, C. M., Lentini, C. J., Tang, Y., Johnston, D. T., Wankel, S. D., & Jardine, P. M. (2015) · The ISME Journal · doi:10.1038/ismej.2015.50 · Cited by 245
Syntrophic biodegradation of hydrocarbon contaminants
Gieg, L. M., Fowler, S. J., & Berdugo-Clavijo, C. (2014) · Current Opinion in Biotechnology · doi:10.1016/j.copbio.2013.09.002 · Cited by 245
Egli, T. (1995) · Advances in Microbial Ecology · doi:10.1007/978-1-4684-7724-5_8 · Cited by 230
Winderl, C., Anneser, B., Griebler, C., Meckenstock, R. U., & Lueders, T. (2008) · Applied and Environmental Microbiology · doi:10.1128/aem.01951-07 · Cited by 214
Self-citationHigh-resolution monitoring of biogeochemical gradients in a tar oil-contaminated aquifer
Anneser, B., Einsiedl, F., Meckenstock, R. U., Richters, L., Wisotzky, F., & Griebler, C. (2008) · Applied Geochemistry · doi:10.1016/j.apgeochem.2008.02.003 · Cited by 153
Self-citationCurrent developments in groundwater ecology — from biodiversity to ecosystem function and services
Griebler, C., Malard, F., & Tristan, L. (2014) · Current Opinion in Biotechnology · doi:10.1016/j.copbio.2014.01.018 · Cited by 144
Self-citationScheutz, C., Durant, N. D., Dennis, P., Hansen, M. H., Jørgensen, T. H., Jakobsen, R., Cox, E., & Bjerg, P. L. (2008) · Environmental Science & Technology · doi:10.1021/es800764t · Cited by 138
Self-citationThe significance of microbial processes in hydrogeology and geochemistry
Chapelle, F. H. (2000) · Hydrogeology Journal · doi:10.1007/pl00010973 · Cited by 127
Thornton, S. F., Quigley, S., Spence, M. J., Banwart, S. A., Bottrell, S. H., & Lerner, D. N. (2001) · Journal of Contaminant Hydrology · doi:10.1016/s0169-7722(01)00168-1 · Cited by 125
Brusseau, M. L. (1993) · Water Resources Research · doi:10.1029/92wr02595 · Cited by 118
van Breukelen, B. M., & Griffioen, J. (2004) · Journal of Contaminant Hydrology · doi:10.1016/j.jconhyd.2004.01.001 · Cited by 117
A generalized Damköhler number for classifying material processing in hydrological systems
Oldham, C. E., Farrow, D. E., & Peiffer, S. (2013) · Hydrology and earth system sciences · doi:10.5194/hess-17-1133-2013 · Cited by 116
Viruses in granitic groundwater from 69 to 450 m depth of the Äspö hard rock laboratory, Sweden
Kyle, J. E., Eydal, H. S. C., Ferris, F. G., & Pedersen, K. (2008) · The ISME Journal · doi:10.1038/ismej.2008.18 · Cited by 116
Bacterial Physiology, Regulation and Mutational Adaptation in a Chemostat Environment
Ferenci, T. (2007) · Advances in microbial physiology/Advances in Microbial Physiology · doi:10.1016/s0065-2911(07)53003-1 · Cited by 110
Spatio-temporal patterns of microbial communities in a hydrologically dynamic pristine aquifer
Zhou, Y., Kellermann, C., & Griebler, C. (2012) · FEMS Microbiology Ecology · doi:10.1111/j.1574-6941.2012.01371.x · Cited by 109
Self-citationIhssen, J., & Egli, T. W. (2005) · Environmental Microbiology · doi:10.1111/j.1462-2920.2005.00846.x · Cited by 100
Modeling and predicting aquatic aerobic biodegradation – a review from a user's perspective
Rücker, C., & Kümmerer, K. (2012) · Green Chemistry · doi:10.1039/c2gc16267a · Cited by 97
Anneser, B., Pilloni, G., Bayer, A., Lueders, T., Griebler, C., Einsiedl, F., & Richters, L. (2010) · Geomicrobiology Journal · doi:10.1080/01490450903456723 · Cited by 88
Self-citationTuxen, N., Albrechtsen, H., & Bjerg, P. L. (2006) · Journal of Contaminant Hydrology · doi:10.1016/j.jconhyd.2006.01.004 · Cited by 87
Self-citationBacteriophage lytic to Desulfovibrio aespoeensis isolated from deep groundwater
Eydal, H. S. C., Jägevall, S., Hermansson, M., & Pedersen, K. (2009) · The ISME Journal · doi:10.1038/ismej.2009.66 · Cited by 83
Staats, M., Braster, M., & Röling, W. F. M. (2011) · Environmental Microbiology · doi:10.1111/j.1462-2920.2010.02421.x · Cited by 83
Influence of protozoan grazing on contaminant biodegradation
Kota, S., Borden, R. C., & Barlaz, M. A. (1999) · FEMS Microbiology Ecology · doi:10.1016/s0168-6496(99)00010-0 · Cited by 79
Integrated Perspective for Effective Bioremediation
Paliwal, V., Puranik, S., & Purohit, H. J. (2011) · Applied Biochemistry and Biotechnology · doi:10.1007/s12010-011-9479-5 · Cited by 75
Yagi, J. M., Neuhauser, E. F., Ripp, J. A., Mauro, D. M., & Madsen, E. L. (2009) · The ISME Journal · doi:10.1038/ismej.2009.101 · Cited by 74
Protozoan Grazing Increases Mineralization of Naphthalene in Marine Sediment
Tso, S. F., & Taghon, G. L. (2006) · Microbial Ecology · doi:10.1007/s00248-006-9058-4 · Cited by 60
Dominance of Geobacteraceae in BTX-degrading enrichments from an iron-reducing aquifer
Botton, S., Harmelen, M. V., Braster, M., Parsons, J. R., & Röling, W. F. M. (2007) · FEMS Microbiology Ecology · doi:10.1111/j.1574-6941.2007.00371.x · Cited by 60
The Microbiology of the Terrestrial Deep Subsurface
Brockman, F. J., & Murray, C. (2018) · CRC Press eBooks · doi:10.1201/9781351074568-6 · Cited by 58
Evidence for microbial iron reduction in a landfill leachate-polluted aquifer (Vejen, Denmark)
Albrechtsen, H., & Christensen, T. H. (1994) · Applied and Environmental Microbiology · doi:10.1128/aem.60.11.3920-3925.1994 · Cited by 56
Self-citationDannenberg, S., Wudler, J., & Conrad, R. (1997) · FEMS Microbiology Ecology · doi:10.1111/j.1574-6941.1997.tb00378.x · Cited by 53
Understanding of Aquifer Microbiology is Tightly Linked to Sampling Approaches
Lehman, R. M. (2007) · Geomicrobiology Journal · doi:10.1080/01490450701456941 · Cited by 46
Fahrenfeld, N. L., Cozzarelli, I. M., Bailey, Z., & Pruden, A. J. (2014) · Microbial Ecology · doi:10.1007/s00248-014-0421-6 · Cited by 44
Scholl, M. A., Cozzarelli, I. M., & Christenson, S. C. (2006) · Journal of Contaminant Hydrology · doi:10.1016/j.jconhyd.2006.03.005 · Cited by 43
Holmes, D. E., Giloteaux, L., Williams, K. H., Wrighton, K. C., Wilkins, M. J., Thompson, C. A., Roper, T. J., Long, P. E., & Lovley, D. R. (2013) · The ISME Journal · doi:10.1038/ismej.2013.20 · Cited by 42
Regeard, C., Maillard, J., Dufraigne, C., Deschavanne, P., & Holliger, C. (2005) · Applied and Environmental Microbiology · doi:10.1128/aem.71.6.2955-2961.2005 · Cited by 41
Organic Quality of Groundwaters
Gooddy, D. C., & Hinsby, K. (2008) · Wiley eBooks · doi:10.1002/9781444300345.ch3 · Cited by 38
Feisthauer, S., Seidel, M., Bombach, P., Traube, S., Knöller, K., Wange, M., Fachmann, S., & Richnow, H. H. (2012) · Journal of Contaminant Hydrology · doi:10.1016/j.jconhyd.2012.03.001 · Cited by 35
Rein, A., Bauer, S., Dietrich, P., & Beyer, C. (2009) · Journal of Contaminant Hydrology · doi:10.1016/j.jconhyd.2009.06.005 · Cited by 30
Marozava, S., Röling, W. F. M., Seifert, J., Küffner, R., von Bergen�, M., & Meckenstock, R. U. (2014) · Systematic and Applied Microbiology · doi:10.1016/j.syapm.2014.02.004 · Cited by 27
Self-citationSmith, M. J., Adams, M. J., & Ward, E. (2012) · Environmental Microbiology Reports · doi:10.1111/1758-2229.12026 · Cited by 19
Cited by
Biofilms: an emergent form of bacterial life
Flemming, H.-C., Wingender, J., Szewzyk, U., Steinberg, P., Rice, S. A., & Kjelleberg, S. (2016) · Nature Reviews Microbiology · doi:10.1038/nrmicro.2016.94 · Cited by 5,979
Metadata
- Authors
- Meckenstock, R. U., Elsner, M., Griebler, C., Lueders, T., Stumpp, C., Aamand, J., Agathos, S. N., Albrechtsen, H.-J., Bastiaens, L., Bjerg, P. L., Boon, N., Dejonghe, W., Huang, W. E., Schmidt, S. I., Smolders, E., Sørensen, S. R., Springael, D., & van Breukelen, B. M.
- Venue
- Environmental Science & Technology
- Publisher
- American Chemical Society (ACS)
- Published
- 2015-06-05
- Volume
- 49
- Issue
- 12
- Pages
- 7073-7081
- ISSN
- 0013-936X (ISSN-L)
- 1520-5851
- OpenAlex
- W1864705147
- Cited by
- 296
- References
- 64
- FWCI
- 15.19
- Type
- journal article
- Language
- en
- Open access
- green
About these checks
Registry, retraction, Cites and statistics results are computed, not judged, with one exception: a printed reference that no index lists is read once by a model before it counts as a citation error. Claims are extracted by a model and kept only when their quote appears verbatim in the text; each cited source is then checked, with a model’s help, for whether it says what the claim relies on. Those verdicts can be wrong — read the claim’s quote and the cited source before relying on one.
Statistics and arithmetic are recomputed, not judged.
Confidence bands are shown only for fields calibrated on our annotated test set. None is calibrated yet, so no band is shown.
What counts as a claim ›How we measure confidence ›How we check this ›
Are you an author, or do you see a problem with this page? Request a review
Data sources
Bibliographic data: Semantic Scholar, OpenAlex, Crossref.
Contains information from the Semantic Scholar Academic Graph Datasets, made available under the ODC Attribution License (ODC-BY 1.0).
Semantic Scholar’s data is described in: Kinney, R., et al. (2023). The Semantic Scholar Open Data Platform. arXiv:2301.10140.