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Development of Cell-Free Transcription–Translation Systems in Three Soil Pseudomonads
Open accessPublished version of a preprint
Abstract
Abstract In vitro transcription-translation (TX-TL) can enable faster engineering of biological systems. This speed-up can be significant, especially in difficult-to-transform chassis. This work shows the successful development of TX-TL systems using three soil-derived wild-type Pseudomonads known to promote plant growth: Pseudomonas synxantha, Pseudomonas chlororaphis , and Pseudomonas aureofaciens . One, P. synxantha , was further characterized. A lysate test of P. synxantha showed a maximum protein yield of 2.5 μ M at 125 proteins per DNA template and a maximum protein synthesis rate of 20 nM/min. A set of different constitutive promoters driving mNeonGreen expression were tested in TX-TL and integrated into the genome, showing similar normalized strengths for in vivo and in vitro fluorescence. This correspondence between the TX-TL derived promoter strength and the in vivo promoter strength indicates these lysate-based cell-free systems can be used to characterize and engineer biological parts without genome integration, enabling a faster designbuild-test cycle.
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Highly accurate protein structure prediction with AlphaFold
Jumper, J., Evans, R., Pritzel, A., Green, T., Figurnov, M., Ronneberger, O., Tunyasuvunakool, K., Bates, R., Žídek, A., Potapenko, A., et al. (2021) · Nature · doi:10.1038/s41586-021-03819-2 · Cited by 43,764
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Research works printed but not linked: 48
- 10.1038/nmeth.1318 · DOI
- 10.1038/nbt.3659 · DOI · Paper page
- 10.1038/nature04640 · DOI · Paper page
- 10.1038/s41586-022-05157-3 · DOI
- 10.1038/ncomms1516 · DOI
- 10.15252/msb.20156663 · DOI
- 10.1002/cphc.201900739 · DOI
- 10.1101/cshperspect.a023812 · DOI · Paper page
- 10.1093/nar/gkab1135 · DOI
- 10.1126/science.aac7341 · DOI
- 10.1038/s41589-018-0168-3 · DOI
- 10.1038/nbt1413 · DOI
- 10.1128/AEM.69.11.6703-6714.2003 · DOI
- 10.1093/femsre/fuv006 · DOI
- 10.1111/1758-2229.12934 · DOI
- 10.1002/ppul.21011 · DOI
- 10.1038/s41579-021-00567-y · DOI
- 10.1093/nar/gkaa167 · DOI
- 10.1038/s41587-020-0468-5 · DOI
- 10.1016/j.cell.2017.03.041 · DOI
- 10.3390/microorganisms10040723 · DOI
- 10.3389/fbioe.2019.00248 · DOI
- 10.1073/pnas.1715806115 · DOI
- 10.1016/j.synbio.2020.07.006 · DOI
- Moore S. J., 2023, Nat. Prod. Rep., 40, 228, 10.1039/D2NP00057A · DOI
- 10.3390/su9071163 · DOI
- 10.1038/s41467-019-10210-3 · DOI
- 10.1038/nrmicro3253 · DOI
- 10.1007/s11274-017-2356-9 · DOI
- 10.1038/nrmicro1129 · DOI
- 10.1128/genomea.00130-15 · DOI
- 10.1128/jb.170.8.3499-3508.1988 · DOI
- 10.1038/nrmicro1129 · DOI
- 10.1094/MPMI.2000.13.12.1293 · DOI
- 10.1126/science.abd1515 · DOI
- 10.1007/s00253-004-1642-2 · DOI
- 10.1007/s12257-012-0807-6 · DOI
- 10.1002/jobm.3620370309 · DOI
- 10.3389/fmicb.2022.999988 · DOI
- 10.3791/50762 · DOI
- 10.1093/synbio/ysac011 · DOI
- 10.1021/sb400131a · DOI
- 10.1073/pnas.85.23.8973 · DOI
- 10.1038/srep08663 · DOI
- 10.1128/AEM.02041-16 · DOI
- 10.1021/acssynbio.5b00058 · DOI
- 10.1038/nprot.2006.24 · DOI
- 10.1038/nmeth765 · DOI
Metadata
- Authors
- Meyerowitz, J. T., Larsson, E. M., & Murray, R. M.
- Affiliations
- California Institute of Technology (US)
- Corresponding author
- Meyerowitz, Joseph T.
- Venue
- ACS Synthetic Biology
- Publisher
- American Chemical Society (ACS)
- Published
- 2024-02-06
- Volume
- 13
- Issue
- 2
- Pages
- 530-537
- ISSN
- 2161-5063 (ISSN-L)
- OpenAlex
- W4391565761
- Cited by
- 5
- References
- 1
- Citations by year
- 2026: 1 · 2025: 3 · 2024: 1
- FWCI
- 0.68
- Type
- journal article
- Language
- en
- Open access
- green
- dx.doi.org
- Licence
- Locations
- ACS Synthetic Biology (publishedVersion)
- bioRxiv (Cold Spring Harbor Laboratory) (acceptedVersion, cc-by)
- PubMed (publishedVersion)
- Funders
- Army Research Office (W911NF-09-0001)
- Division of Chemical, Bioengineering, Environmental, and Transport Systems (CBET-1903477)
- Institute for Collaborative Biotechnologies (W911NF-19-2-0026, W911NF-19-D-0001)
- International Human Frontiers Science Program (International Human Frontiers Science Program)
- Topics
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › RNA and protein synthesis mechanisms
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › Microbial Metabolic Engineering and Bioproduction
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Genetics › Bacterial Genetics and Biotechnology
- Keywords
- cell-free transcription-translation, cell-free protein synthesis, Pseudomonas synxantha, Pseudomonas chlororaphis, Pseudomonas aureofaciens, plant growth-promoting bacteria, design-build-test cycle, chassis engineering, protein yield
- MeSH terms
- Cell-Free System, DNA, Escherichia coli, Transcription, Genetic, Protein Biosynthesis
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