The Chemical Space Project
Reymond, Jean-Louis·2015·Accounts of Chemical Research
Cited by (715)
Items 301–400 of 715
- A Mixed Integer Linear Programming Formulation to Artificial Neural NetworksTatsuya Akutsu, Hiroshi Nagamochi · 2019 · International Conference on Information Science and Systems (ICISS)
- A Method for the Inverse QSAR/QSPR Based on Artificial Neural Networks and Mixed Integer Linear ProgrammingRachaya Chiewvanichakorn, Chenxi Wang, Zhe Zhang, Aleksandar Shurbevski, Hiroshi Nagamochi, Tatsuya Akutsu · 2020 · International Conference on Bioscience, Biochemistry and Bioinformatics (ICBBB)
- Forecasting System of Computational Time of DFT/TDDFT Calculations under the Multiverse Ansatz via Machine Learning and CheminformaticsShuo Ma, Yingjin Ma, Baohua Zhang, Yingqi Tian, Zhong Jin · 2021 · ACS Omega
- Transmol: repurposing a language model for molecular generationRustam Zhumagambetov, Ferdinand Molnár, Vsevolod A. Peshkov, Siamac Fazli · 2021 · RSC Advances
- A novel method for inference of acyclic chemical compounds with bounded branch-height based on artificial neural networks and integer programmingNaveed Ahmed Azam, Jianshen Zhu, Yanming Sun, Yu Shi, Aleksandar Shurbevski, Liang Zhao, Hiroshi Nagamochi, Tatsuya Akutsu · 2021 · Algorithms for Molecular Biology
- TrGPCR: GPCR–Ligand Binding Affinity Prediction Based on Dynamic Deep Transfer LearningYaoyao Lu, Runhua Zhang, Tengsheng Jiang, Qiming Fu, Zhiming Cui, Hongjie Wu · 2023 · IEEE Journal of Biomedical and Health Informatics
- Improved fluorescence assays to measure the defects associated with F508del‐CFTR allow identification of new active compoundsEmily Langron, Michela Iezzi Simone, Clémence Delalande, Jean‐Louis Reymond, David L. Selwood, Paola Vergani · 2017 · British Journal of Pharmacology
- A diversity-oriented synthesis of polyheterocycles via the cyclocondensation of azomethine imineArshad Jamal Ansari, Ramdas S. Pathare, Anita Kumawat, Antim K. Maurya, Sarika Verma, Vijai K. Agnihotri, Rahul Joshi, Ramesh K. Metre, Ashoke Sharon, R. T. Pardasani et al. · 2019 · New Journal of Chemistry
- Domain adaptation of a SMILES chemical transformer to SELFIES with limited computational resourcesObaid Khaleifah Alhmoudi, Mahmoud Aboushanab, Muhammed Thameem, Ali Elkamel, Ali AbdulKareem AlHammadi · 2025 · Scientific Reports
- 30 years of AI for electrocatalysis: Where we are and what’s next?Haotian Chen, Enno Kätelhön, Yuanyuan Lu, Jun Cheng, Zhong‐Qun Tian, Richard G. Compton · 2025 · eScience
- On the synthesis of machine learning and automated reasoning for an artificial synthetic organic chemistManeesh K. Yadav · 2017 · New Journal of Chemistry
- The Derivation of a Matched Molecular Pairs Based ADME/Tox Knowledge Base for Compound OptimizationJames A. Lumley, Prashant V. Desai, Ji‐Bo Wang, Suntara Cahya, Hongzhou Zhang · 2020 · Journal of Chemical Information and Modeling
- Direct Prediction of Physicochemical Properties and Toxicities of Chemicals from Analytical Descriptors by GC–MSYasuyuki Zushi · 2022 · Analytical Chemistry
- An efficient green protocol for the preparation of acetoacetamides and application of the methodology to a one-pot synthesis of Biginelli dihydropyrimidines. Expansion of dihydropyrimidine topological chemical spaceFernando H. S. Gama, Rodrigo O. M. A. de Souza, Simon J. Garden · 2015 · RSC Advances
- Identification of acetylcholinesterase inhibitors using homogenous cell‐based assays in quantitative high‐throughput screening platformsShuaizhang Li, Ruili Huang, Samuel Solomon, Yitong Liu, Bin Zhao, Michael F. Santillo, Menghang Xia · 2017 · Biotechnology Journal
- Multi-targeting Drug Community ChallengeAvner Schlessinger, Ruben A Abagyan, Heather A. Carlson, Kristen K. Dang, Justin Guinney, Ross Leigh Cagan · 2017 · Cell chemical biology
- Extending accessible chemical space for the identification of novel leadsJürgen Bajorath · 2016 · Expert Opinion on Drug Discovery
- POLYT5: an encoder-decoder foundation chemical language model for generative polymer designHarikrishna Sahu, Wei Xiong, Anagha Savit, Shivank S. Shukla, Rampi Ramprasad · 2026 · npj Artificial Intelligence
- A data-driven machine learning approach for discovering potent LasR inhibitorsChristabel Ming Ming Koh, Lilian Siaw Yung Ping, Christopher Ha Heng Xuan, Lau Bee Theng, Hwang Siaw San, Enzo A. Palombo, Xavier Chee Wezen · 2023 · Bioengineered
- NRC-VABS: Normalized Reparameterized Conditional Variational Autoencoder with applied beam search in latent space for drug molecule designArun Singh Bhadwal, Kamal Kumar, Neeraj Kumar · 2023 · Expert Systems with Applications
- KNIME workflows for applications in medicinal and computational chemistryRuchira Joshi, Zipeng Zheng, Palak Agarwal, Ma’mon M. Hatmal, Xinmin Chang, Paul M. Seidler, Ian S. Haworth · 2024 · Artificial Intelligence Chemistry
- Chemical shift prediction in 13C NMR spectroscopy using ensembles of message passing neural networks (MPNNs)David C. Williamson, S. Lopez-Ponte, I. Iglesias, Nicola M. Tonge, Carlos Cobas, E. Kate Kemsley · 2024 · Journal of Magnetic Resonance
- A View on Molecular Complexity from the GDB Chemical SpaceYe Buehler, Jean‐Louis Reymond · 2025 · Journal of Chemical Information and Modeling
- An Inverse QSAR Method Based on a Two-Layered Model and Integer ProgrammingYu Shi, Jianshen Zhu, Naveed Ahmed Azam, Kazuya Haraguchi, Liang Zhao, Hiroshi Nagamochi, Tatsuya Akutsu · 2021 · International Journal of Molecular Sciences
- Genetic Algorithms for the Discovery of Homogeneous CatalystsSimone Gallarati, Puck van Gerwen, Alexandre A. Schoepfer, Rubén Laplaza, Clémence Corminbœuf · 2023 · CHIMIA International Journal for Chemistry
- Remapping the Chemical Space and the Pharmacological Space of Drugs: What Can We Expect from the Road Ahead?Lucas Silva Franco, Bárbara da Silva Mascarenhas de Jesus, Pedro de Sena Murteira Pinheiro, Carlos Alberto Manssour Fraga · 2024 · Pharmaceuticals
- iScore: A ML-Based Scoring Function for De Novo Drug DiscoverySayyed Jalil Mahdizadeh, Leif Axel Eriksson · 2025 · Journal of Chemical Information and Modeling
- On-demand design of materials with enhanced dielectric properties via a machine learning-assisted materials genome approachShujian Cao, Zhentao Zhang, Siqin Song, Haoxiang Lan, Liang Gao, Jiaping Lin, Chongyin Zhang, Wanyu Tang · 2025 · Journal of Materials Chemistry A
- Synthesis of Structurally Diverse Emissive Molecular Rotors with Four-Component Ugi StatorsMa. Carmen García‐González, Andrés Aguilar‐Granda, Angel Zamudio‐Medina, Luis D. Miranda, Braulio Rodríguez‐Molina · 2018 · The Journal of Organic Chemistry
- EViS: An Enhanced Virtual Screening Approach Based on Pocket–Ligand SimilarityWenyi Zhang, Jing Huang · 2022 · Journal of Chemical Information and Modeling
- Energy Windows for Computed Compound Conformers: Covering Artefacts Or Truly Large Reorganization Energies?Nicolas Foloppe, I‐Jen Chen · 2019 · Future Medicinal Chemistry
- Storing and Using Qualitative and Quantitative Structure–Activity Relationships in the Era of Toxicological and Chemical Data ExpansionSulev Sild, Geven Piir, Daniel C. Neagu, Uko Maran · 2019 · Royal Society of Chemistry eBooks
- Autonome Entdeckung in den chemischen Wissenschaften, Teil I: FortschrittConnor W. Coley, Natalie S. Eyke, Klavs F. Jensen · 2019 · Angewandte Chemie
- Atomic structure generation from reconstructing structural fingerprintsVictor Fung, Shuyi Jia, Jiaxin Zhang, Sirui Bi, Junqi Yin, Panchapakesan Ganesh · 2022 · Machine Learning Science and Technology
- Computational Approaches to Enzyme Inhibition by Marine Natural Products in the Search for New DrugsFederico Gago · 2023 · Marine Drugs
- Synthesis in the Chemical Space AgeTim Cernak · 2016 · Chem
- Machine Learning and Big-Data in Computational ChemistryRafael Gómez‐Bombarelli, Alán Aspuru‐Guzik · 2018 · Springer eBooks
- Fragment screening using biolayer interferometry reveals ligands targeting the SHP-motif binding site of the AAA+ ATPase p97Sebastian Bothe, Petra Hänzelmann, Stephan Böhler, Josef Kehrein, Markus Zehe, Christoph Wiedemann, Ute A. Hellmich, Ruth Brenk, Hermann Schindelin, Christoph Sotriffer · 2022 · Communications Chemistry
- Reaction Space Charting as a Tool in Organic Chemistry Research and DevelopmentEloy Lozano Baró, Pau Nadal Rodríguez, Jordi Juárez‐Jiménez, Ouldouz Ghashghaei, Rodolfo Lavilla · 2024 · Advanced Synthesis & Catalysis
- Diamonds in Chemical Space: The Synthesis of BrexazineLeon Rebhan, Ye Buehler, Jean‐Louis Reymond · 2024 · Helvetica Chimica Acta
- Structure-Based Generation of 3D Small-Molecule Drugs: Are We There Yet?Bo Yang, Chijian Xiang, Tongtong Li, Yunong Xu, Jianing Li · 2025 · Journal of Medicinal Chemistry
- Systematic optimization of a fragment-based force field against experimental pure-liquid properties considering large compound families: application to oxygen and nitrogen compoundsMarina P. Oliveira, Philippe H. Hünenberger · 2021 · Physical Chemistry Chemical Physics
- Machine Learning and Big-Data in Computational ChemistryRafael Gómez‐Bombarelli, Alán Aspuru‐Guzik · 2020 · Springer eBooks
- Access to high value sp 3 -rich frameworks using photocatalyzed [2 + 2]-cycloadditions of γ-alkylidene–γ-lactamsDimitris Kalaitzakis, Ioannis Kampouropoulos, Manolis Sofiadis, Tamsyn Montagnon, Georgios E. Vassilikogiannakis · 2022 · Chemical Communications
- Identification of SARS-CoV-2 Main Protease Inhibitors Using Chemical Similarity Analysis Combined with Machine LearningK. Eurídice Juárez‐Mercado, Milton Abraham Gómez-Hernández, Juana Salinas-Trujano, Luis Córdova-Bahena, Clara Espitia, Sonia Mayra Pérez‐Tapia, José L. Medina‐Franco, Marco Antonio Velasco-Velázquez · 2024 · Pharmaceuticals
- Developing RNA Aptamers for Potential Treatment of Neurological DiseasesZhen Huang, Li Niu · 2019 · Future Medicinal Chemistry
- Multi-objective biofilm algorithm (MOBifi) for de novo drug design with special focus to anti-diabetic drugsR. Vasundhara Devi, S. Siva Sathya, Mohane Selvaraj Coumar · 2020 · Applied Soft Computing
- CAT-COSMO-CAMPD: Integrated in silico design of catalysts and processes based on quantum chemistryChristoph Gertig, Lorenz Fleitmann, Carl Hemprich, Janik Hense, André Bardow, Kai O. Leonhard · 2021 · Computers & Chemical Engineering
- Computer‐Aided Molecular DesignTohid Nejad Ghaffar Borhani · 2022 · Wiley eBooks
- Hessian QM9: A quantum chemistry database of molecular Hessians in implicit solventsNicholas J. Williams, Lara Kabalan, Ljiljana Stojanović, Viktor Zólyomi, Edward O. Pyzer‐Knapp · 2025 · Scientific Data
- BioPrint Meets the AI Age: Development of Artificial Intelligence-Based ADMET Models for the Drug-Discovery Platform SAFIRESarah E. Biehn, Luis Miguel Goncalves, Juerg Lehmann, Jessica D Marty, Christoph Mueller, Samuel A. Ramirez, Fabien Tillier, Carleton R. Sage · 2024 · Future Medicinal Chemistry
- An Automated Purification Workflow Coupled with Material-Sparing High-Throughput 1H NMR for Parallel Medicinal ChemistryJustin Bellenger, Martin R. M. Koos, Melissa Avery, Mark W. Bundesmann, Gregory M. Ciszewski, Bhagyashree Khunte, Carolyn A. Leverett, Gregory Ostner, Tim F. Ryder, Kathleen A. Farley · 2024 · ACS Medicinal Chemistry Letters
- Rapid and modular synthesis of skeletally diverse natural product analogs by expansion of biosynthetic processesHiroki Oguri · 2025 · Bulletin of the Chemical Society of Japan
- Going beyond SMILES enumeration for data augmentation in generative drug discoveryHelena Brinkmann, Antoine Argante, Hugo ter Steege, Francesca Grisoni · 2025 · Digital Discovery
- Diffusion Models at the Drug Discovery Frontier: A Review on Generating Small Molecules Versus Therapeutic PeptidesYiquan Wang, Yahui Ma, Yu-Han Chang, Jiayao Yan, Jialin Zhang, Ming-Yi Cai, Kai Wei · 2025 · Biology
- A New Integer Linear Programming Formulation to the Inverse QSAR/QSPR for Acyclic Chemical Compounds Using Skeleton TreesFan Zhang, Jianshen Zhu, Rachaya Chiewvanichakorn, Aleksandar Shurbevski, Hiroshi Nagamochi, Tatsuya Akutsu · 2020 · Lecture notes in computer science
- Spontaneous Formation of Functional Structures in Messy EnvironmentsMayer, Christian · 2022 · Life
- Yin-yang in drug discovery: rethinking de novo design and development of predictive modelsAna L. Chávez‐Hernández, Edgar López‐López, José L. Medina‐Franco · 2023 · Frontiers in Drug Discovery
- ChemoGraph: Interactive Visual Exploration of the Chemical SpaceBharat Kale, Austin Clyde, Maoyuan Sun, Arvind Ramanathan, Rick L. Stevens, Michael E. Papka · 2023 · Computer Graphics Forum
- Tree-Invent: A Novel Multipurpose Molecular Generative Model Constrained with a Topological TreeMingyuan Xu, Hongming Chen · 2023 · Journal of Chemical Information and Modeling
- When Data Are Lacking: Physics-Based Inverse Design of Biopolymers Interacting with Complex, Fluid PhasesJeroen Methorst, Niek van Hilten, Art Hoti, Kai Steffen Stroh, Herre Jelger Risselada · 2024 · Journal of Chemical Theory and Computation
- Benchmarking machine-readable vectors of chemical reactions on computed activation barriersPuck van Gerwen, Ksenia R. Briling, Yannick Calvino Alonso, Malte Franke, Clémence Corminbœuf · 2024 · Digital Discovery
- A physicochemical descriptor based method for effective and rapid screening of dual inhibitors against BACE-1 and GSK-3β as targets for Alzheimer’s diseaseAkhil Kumar, Gaurava Srivastava, Ashok Kumar Sharma · 2017 · Computational Biology and Chemistry
- A distinctive transformation based diversity oriented synthesis of small ring carbocycles and heterocycles from biocatalytically derived enantiopure α-substituted-β-hydroxyestersJoydev Halder, Debabrata Das, Samik Nanda · 2018 · Organic & Biomolecular Chemistry
- Generation of a Small Library of Natural Products Designed to Cover Chemical Space InexpensivelySteve O’Hagan, Douglas Bruce Kell · 2019
- Unprecedented Potential for Neural Drug Discovery Based on Self-Organizing hiPSC PlatformsAgustín Cota-Coronado, Jennifer C. Durnall, Néstor Fabián Díaz, Lachlan H. Thompson, N.E. Díaz-Martínez · 2020 · Molecules
- Bioactivity characterization of herbal moleculesLeticia Félix-Cuencas, Emilio Andrés Delis Hechavarría, Alexandra Jarro, Ixchel Parola-Contreras, Axel Escamilla-García, Irineo Torres‐Pacheco, Juan Fernando García‐Trejo, Genaro M. Soto-Zarazúa, Ramón Gerardo Guevara-González · 2021 · Elsevier eBooks
- Focused Library Generator: case of Mdmx inhibitorsZhonghua Xia, Pavel Karpov, Grzegorz M. Popowicz, Igor V. Tetko · 2019 · Journal of Computer-Aided Molecular Design
- On application of deep learning to simplified quantum-classical dynamics in electronically excited statesEvgeny Posenitskiy, Fernand Spiegelman, Didier Lemoine · 2021 · Machine Learning Science and Technology
- Progress of Artificial Intelligence in Drug Synthesis and Prospect of Its Application in Nitrification of Energetic MaterialsBojun Tan, Jing Zhang, Chuan Xiao, Yingzhe Liu, Xiong Yang, Wei Wang, Yanan Li, Ning Liu · 2023 · Molecules
- Predictive design of multimonomeric polyelectrolytes enables lung-specific gene deliveryJeffrey Ting, John D. Fisher, Tyler Conyers, Suteja Patil, Catherine G. Robohn, Teresa Tamayo-Mendoza, Felipe Oviedo, Shashi K. Murthy · 2024 · Polymer Chemistry
- Generating New Coordination Compounds via Multireference Simulations, Genetic Algorithms, and Machine Learning: The Case of Co(II) and Dy(III) Molecular MagnetsLion Frangoulis, Zahra Khatibi, Lorenzo A. Mariano, Alessandro Lunghi · 2025 · JACS Au
- Chemical Space Exploration with Artificial “Mindless” MoleculesThomas Gasevic, Marcel Müller, Jonathan Schöps, Stephanie Lanius, Jan Hermann, Stefan Grimme, Andreas Hansen · 2025 · Journal of Chemical Information and Modeling
- Augmenting Molecular Deep Generative Models with Topological Data Analysis RepresentationsYair Schiff, Vijil Chenthamarakshan, Samuel C. Hoffman, Karthikeyan Natesan Ramamurthy, Payel Das · 2022 · IEEE International Conference on Acoustics Speech and Signal Processing
- The machine-learned radii of atomsTymofii Yu. Nikolaienko, Л. А. Булавін · 2021 · Computational and Theoretical Chemistry
- DNA‐Encoded Libraries: Towards Harnessing their Full Power with Darwinian EvolutionMillicent Dockerill, Nicolas Winssinger · 2022 · Angewandte Chemie
- Learning with uncertainty to accelerate the discovery of histone lysine-specific demethylase 1A (KDM1A/LSD1) inhibitorsDong Wang, Zhenxing Wu, Chao Shen, Lingjie Bao, Hao Luo, Zhe Wang, Hucheng Yao, Kong De, Cheng Luo, Tingjun Hou · 2022 · Briefings in Bioinformatics
- De novo generation of dual-target ligands for the treatment of SARS-CoV-2 using deep learning, virtual screening, and molecular dynamic simulationsFahad Humayun, Fatima Khan, Abbas Khan, Abdulrahman Alshammari, Jun Hyeok Ji, Ali Farhan, Nasim Fawad, Waheed Alam, Arif Ali, Dong‐Qing Wei · 2023 · Journal of Biomolecular Structure and Dynamics
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- Neuromorphic principles for machine olfactionNik Dennler, Aaron C. True, van Schaik André, Michael Schmuker · 2025 · Neuromorphic Computing and Engineering
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- A novel method for inference of chemical compounds with prescribed topological substructures based on integer programmingTatsuya Akutsu, Hiroshi Nagamochi · 2020 · arXiv (Cornell University)