Membrane Activity of the Peptide Antibiotic Clavanin and the Importance of Its Glycine Residues
Open accessAbstract
The peptide antibiotic clavanin A (VFQFLGKIIHHVGNFVHGFSHVF-NH(2)) is rich in histidine and glycine residues. In this study the antimicrobial activity and membrane activity of wild-type clavanin A and seven Gly --> Ala mutants thereof were investigated. Clavanin A effectively killed the test microorganism Micrococcus flavus and permeabilized its cytoplasmic membrane in the micromolar concentration range, suggesting that the membrane is the target for this molecule. Consistent with this suggestion, it was observed that clavanin A efficiently inserted into different phospholipid monolayers mainly via hydrophobic interactions. Bilayer permeabilization was observed for both low and high molecular mass fluorophores enclosed in unilamellar vesicles and occurred at the same concentration as the antimicrobial activity. It is therefore suggested that the loss of barrier function does not involve specific receptors in the target membrane. Circular dichroism spectroscopy indicated that under membrane mimicking conditions a random coil --> helical transition was induced for all clavanin derivatives tested. Observed differences in peptide-membrane interaction and biological activity between the various clavanin derivatives demonstrated the functional importance of Gly at the positions 6 and 13. These two glycines may act as flexible hinges that facilitate the hydrophobic N-terminal end of clavanin to deeply insert into the bilayer. On the contrary, no such role is evident for Gly 18, as its substitution by Ala actually stimulated membrane interaction and biological activity. This study suggests that the combined hydrophobicity, overall state of charge, and conformational flexibility of the peptide determine the (membrane) activity of clavanin A and its Gly --> Ala mutants.
Integrity signals
Registry
Cites
Statistics
Claims the paper makes
Claims other papers make about this one
Each is checked against this paper’s own text: does it say what the citing paper says it does?
Glycines in Cn-AMP1 could be important to antimicrobial function because they improve peptide flexibility.
“suggesting that glycines from Cn-AMP1 could be important to antimicrobial function since they improve peptide flexibility.”
From Structural insights into <i>Cn</i>‐AMP1, a short disulfide‐free multifunctional peptide from green coconut water (2015) · cites this paper as [27]
The role of glycines in peptide flexibility was previously observed for other linear peptides.
“The role of glycines in peptide flexibility was previously observed for other linear peptides.”
From Structural insights into <i>Cn</i>‐AMP1, a short disulfide‐free multifunctional peptide from green coconut water (2015) · cites this paper as [27]
Cites
Agents that increase the permeability of the outer membrane
Vaara, M. (1992) · Microbiological Reviews · doi:10.1128/mr.56.3.395-411.1992 · Cited by 1,879 · see citing works
Flagged first, then by citations
Cited by
Sorted by citations
Anti-microbial peptides: from invertebrates to vertebrates
Bulet, P., Stöcklin, R., & Menin, L. (2004) · Immunological Reviews · doi:10.1111/j.0105-2896.2004.0124.x · Cited by 1,107 · see citing works
Santana, M. J., de Oliveira, A. L., Queiroz Júnior, L. H. K., Mandal, S. M., Matos, C. O., de O. Dias, R., Franco, O. L., & Lião, L. M. (2015) · FEBS Letters · doi:10.1016/j.febslet.2015.01.029 · Cited by 21 · see citing works
- Authors
- van Kan, E. J. M., van der Bent, A., Demel, R. A., & de Kruijff, B.
- Affiliations
- Department of Industrial and Specialty Biochemicals, Renewable Resources, Agrotechnological Research Institute, Wageningen University and Research Centre, Bornsesteeg 59, 6708 PD Wageningen, The Netherlands, and Department of Biochemistry of Membranes, Centre for Biomembranes and Lipid Enzymology, Institute of Biomembranes, Utrecht University, Padualaan 8, 3584 CH Utrecht, The Netherlands
- Utrecht University (NL)
- Venue
- Biochemistry
- Publisher
- American Chemical Society (ACS)
- Published
- 2001-05-01
- Volume
- 40
- Issue
- 21
- Pages
- 6398-6405
- ISSN
- 0006-2960 (ISSN-L)
- 1520-4995
- OpenAlex
- W2150384929
- Cited by
- 52
- References
- 1
- Citations by year
- 2025: 1 · 2024: 1 · 2023: 3 · 2022: 2 · 2021: 4 · 2020: 2 · 2019: 4 · 2018: 2 · 2017: 3 · 2016: 5 · 2015: 4 · 2014: 1 · 2013: 1
- FWCI
- 1.60
- Type
- journal article
- Language
- en
- Open access
- green
- research.wur.nl
- Locations
- Biochemistry (publishedVersion)
- PubMed (publishedVersion)
- Socio-Environmental Systems Modeling (acceptedVersion)
- Data Archiving and Networked Services (DANS) (submittedVersion)
- Topics
- Life Sciences › Immunology and Microbiology › Microbiology › Antimicrobial Peptides and Activities
- Physical Sciences › Chemistry › Organic Chemistry › Antimicrobial agents and applications
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › Chemical Synthesis and Analysis
- Keywords
- peptide antibiotics, glycine residues, membrane permeabilization, antimicrobial activity, Micrococcus flavus, peptide-membrane interactions, hydrophobic insertion, conformational flexibility, flexible hinges, phospholipid monolayers, unilamellar vesicles
- MeSH terms
- Alanine, Amino Acid Sequence, Animals, Anti-Bacterial Agents, Blood Proteins, Cell Membrane, Circular Dichroism, Glycine, Lipid Bilayers, Liposomes, Membrane Potentials, Microbial Sensitivity Tests, Micrococcus, Molecular Sequence Data, Peptides, Permeability, Phosphatidylethanolamines, Phosphatidylglycerols, Amino Acid Substitution, Glycerophospholipids
About these checks
Registry, retraction, Cites and statistics results are computed, not judged, with one exception: a printed reference that no index lists is read once by a model before it counts as a citation error. Claims are extracted by a model and kept only when their quote appears verbatim in the text; each cited source is then checked, with a model’s help, for whether it says what the claim relies on. Those verdicts can be wrong — read the claim’s quote and the cited source before relying on one.
Statistics and arithmetic are recomputed, not judged.
Confidence bands are shown only for fields calibrated on our annotated test set. None is calibrated yet, so no band is shown.
What counts as a claim ›How we measure confidence ›How we check this ›
Are you an author, or do you see a problem with this page? Request a review