A Reexamination of the Nucleotide Incorporation Fidelity of DNA Polymerases

Cited by (139)

Items 101–139 of 139

1. Distinct kinetic determinants for the stepwise CCA addition to tRNA
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2. Optimized incorporation of an unnatural fluorescent amino acid affords measurement of conformational dynamics governing high-fidelity DNA replication
   Tyler L. Dangerfield, Kenneth Allen Johnson · 2020 · Journal of Biological Chemistry
3. I260Q DNA polymerase β highlights precatalytic conformational rearrangements critical for fidelity
   Cary Liptak, Mariam M. Mahmoud, Brian E. Eckenroth, Marcus V. Moreno, Kyle W. East, Khadijeh S. Alnajjar, Ji Wei Huang, Jamie B. Towle-Weicksel, Sylvie Doublié, J. Patrick Loria et al. · 2018 · Nucleic Acids Research
4. Identification of Critical Residues for the Tight Binding of Both Correct and Incorrect Nucleotides to Human DNA Polymerase λ
   Jessica A. Brown, Lindsey R. Pack, Shanen M. Sherrer, Ajay K. Kshetry, Sean A. Newmister, Jason D. Fowler, John‐Stephen Taylor, Zucai Suo · 2010 · Journal of Molecular Biology
5. How DNA Polymerases Catalyze DNA Replication, Repair, and Mutation
   Ming‐Daw Tsai · 2014 · Biochemistry
6. Divalent Cations Alter the Rate-Limiting Step of PrimPol-Catalyzed DNA Elongation
   Wenyan Xu, Wenxin Zhao, Nana Morehouse, Maya O. Tree, Linlin Zhao · 2019 · Journal of Molecular Biology
7. Effect of A and B Metal Ion Site Occupancy on Conformational Changes in an RB69 DNA Polymerase Ternary Complex
   Mina Wang, Harold R. Lee, William H. Konigsberg · 2009 · Biochemistry
8. Incorporation of non-nucleoside triphosphate analogues opposite to an abasic site by human DNA polymerases and
   Emmanuele Crespan · 2005 · Nucleic Acids Research
9. A pre-catalytic non-covalent step governs DNA polymerase β fidelity
   Khadijeh S. Alnajjar, Ivan S. Krylov, Amirsoheil Negahbani, Pouya Haratipour, B. A. Kashemirov, Ji Wei Huang, Mariam M. Mahmoud, Charles E. McKenna, Myron F. Goodman, Joann Balazs Sweasy · 2019 · Nucleic Acids Research
10. Charge transport properties of ideal and natural DNA segments, as mutation detectors
    Marilena Mantela, Konstantinos Lambropoulos, Constantinos Simserides · 2023 · Physical Chemistry Chemical Physics
11. Time Course Analysis of Enzyme-Catalyzed DNA Polymerization
    Julius Rentergent, Max D. Driscoll, Sam Hay · 2016 · Biochemistry
12. Kinetic and Structural Mechanisms of (5′S)-8,5′-Cyclo-2′-deoxyguanosine-Induced DNA Replication Stalling
    Wenyan Xu, Adam M. Ouellette, Zdzislaw Wawrzak, Storm J. Shriver, Spencer M. Anderson, Linlin Zhao · 2015 · Biochemistry
13. Conformational dynamics during misincorporation and mismatch extension defined using a DNA polymerase with a fluorescent artificial amino acid
    Tyler L. Dangerfield, Serdal Kırmızıaltın, Kenneth Allen Johnson · 2021 · Journal of Biological Chemistry
14. Role of a GAG Hinge in the Nucleotide-induced Conformational Change Governing Nucleotide Specificity by T7 DNA Polymerase
    Zhinan Jin, Kenneth Allen Johnson · 2010 · Journal of Biological Chemistry
15. Structural basis for the D-stereoselectivity of human DNA polymerase β
    Rajan Vyas, Andrew J. Reed, Austin T. Raper, Walter J. Zahurancik, Petra C. Wallenmeyer, Zucai Suo · 2017 · Nucleic Acids Research
16. Catalytic Mechanism of DNA Polymerases
    Michelle P. Roettger, Marina Bakhtina, Sandeep Kumar, Ming‐Daw Tsai · 2010 · Elsevier eBooks
17. Nucleic Acid Polymerase Fidelity and Viral Population Fitness
    Eric D. Smidansky, Jamie J. Arnold, Craig E. Cameron · 2008 · Elsevier eBooks
18. Pre-steady state kinetic analysis of HIV-1 reverse transcriptase for non-canonical ribonucleoside triphosphate incorporation and DNA synthesis from ribonucleoside-containing DNA template
    Laura A. Nguyen, Robert A. Domaoal, Edward M. Kennedy, Dong‐Hyun Kim, Raymond F. Schinazi, Baek Kim · 2014 · Antiviral Research
19. Sequence Accuracy in Primary Databases: A Case Study on HIV-1B
    S. Balaji, Akash Ramachandran, Krittika Nandy, Paul Shapshak · 2017 · Springer eBooks
20. DNA Polymerases for PCR Applications
    Régen Drouin, Walid Dridi, Oumar Samassékou · 2007 · Springer eBooks
21. Primer terminal ribonucleotide alters the active site dynamics of DNA polymerase η and reduces DNA synthesis fidelity
    Caleb Chang, Christie Lee Luo, Sarah Eleraky, Aaron Lin, Grace Zhou, Yang Gao · 2023 · Journal of Biological Chemistry
22. Modifying the Basicity of the dNTP Leaving Group Modulates Precatalytic Conformational Changes of DNA Polymerase β
    Khadijeh S. Alnajjar, Katarina Wang, Isabel Alvarado-Cruz, Cristian Chavira, Amirsoheil Negahbani, Maryam Nakhjiri, Corinne Minard, Beatriz Garcia-Barboza, B. A. Kashemirov, Charles E. McKenna et al. · 2024 · Biochemistry
23. Pre-Steady-State Kinetic Studies of Nucleotide Incorporation into a Single-Nucleotide Gapped DNA Substrate Catalyzed by Human DNA Polymerase β
    Daniel Betancourt, Turner W. Seay, Nikita Zalenski, Zucai Suo · 2025 · Biochemistry
24. Fidelity, specialization, and evolution of Paramecium PolX DNA polymerases involved in programmed double-strand break DNA repair
    Antonin Nourisson, Sophia Missoury, Soizick Lucas‐Staat, Ahmed Haouz, Marc H. Delarue · 2025 · Nucleic Acids Research
25. In crystallo observation of active site dynamics and transient metal ion binding within DNA polymerases
    Caleb Chang, Grace Zhou, Yang Gao · 2023 · Structural Dynamics
26. Modeling the Dynamics of Negative Mutations for a Mouse Population and the Inverse Problem of Determining Phenotypic Differences in the First Generation
    Raul Argun, Natalia Timurovna Levashova, Dmitry Vitalyevich Lukyanenko, Alla Eduardovna Sidorova, Maxim A. Shishlenin · 2023 · Mathematics
27. The Effect of γ Phosphate Modified Deoxynucleotide Substrates on PCR Activity and Fidelity
    Fumitaka Hashiya, Hirotaka Murase, Akash Chandela, Haruka Hiraoka, Masahito Inagaki, Yuko Nakashima, Naoko Abe, Mayu Nakamura, Goro Terai, Yasuaki Kimura et al. · 2023 · ChemBioChem
28. Biomolecular Simulation of Base Excision Repair and Protein Signaling
    TP Straatsma, James Andrew McCammon, John Holmes Miller, Paul E. Smith, Erich R. Vorpagel, Chung F. Wong, Martin Zacharias · 2006
29. Characterization of human MRE11 and MLH1 interacting domains, and the effects of pathogenic mutations on protein interaction
    Anthony Thien Vo · 2003 · Research Exchange (Washington State University)
30. The molecular basis of nucleotide recognition for T7 DNA polymerase
    Zhinan Jin · 2008 · Texas ScholarWorks (Texas Digital Library)
31. Time course analysis of complex enzyme systems
    Julius Rentergent · 2015 · Research Explorer (The University of Manchester)
32. Organization, Replication, Transposition, and Repair of DNA
    David E. Metzler, Carol M. Metzler, David J. Sauke · 2001 · Elsevier eBooks
33. Probing the base stacking contributions during translesion DNA synthesis.
    Babho Devadoss · 2008 · OhioLink ETD Center (Ohio Library and Information Network)
34. Kinetic studies on different DNA polymerases using 4'-alkylated 2'-deoxynucleotide probes
    Frank Streckenbach · 2010 · KOPS (University of Konstanz)
35. Faculty Opinions recommendation of Watching DNA polymerase η make a phosphodiester bond.
    Moosa Mohammadi, Artur A. Belov · 2013 · Faculty Opinions – Post-Publication Peer Review of the Biomedical Literature
36. DNA replication machineries: Structural insights from crystallography and electron microscopy
    Rebeca Bocanegra, María Ortiz-Rodríguez, Lyra Zumeta, Ismael Plaza-G.A., Elías Faro, Borja Ibarra · 2023 · The Enzymes
37. Das Onkoprotein Mdm4 und seine Wirkung auf die DNA-Replikation
    Kai Wohlberedt · 2024
38. Slow PPi release enhances fidelity of the SARS-CoV-2 RNA dependent RNA polymerase
    Tyler L. Dangerfield, Ingrid Marko, Kenneth Allen Johnson · 2026 · Journal of Biological Chemistry
39. Experiencing 50 Years of Synergistic Development in Structural Biology and Enzymology
    Ming‐Daw Tsai · 2026 · Journal of the Chinese Chemical Society